BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00020724
         (323 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...    81   1e-13
ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    79   3e-13
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    72   5e-11
ref|NP_190408.1| pentatricopeptide repeat-containing protein [Ar...    64   1e-08
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...    63   2e-08

>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 80.9 bits (198), Expect = 1e-13
 Identities = 43/106 (40%), Positives = 61/106 (57%)
 Frame = +1

Query: 1   KHGFKPSSMVYSLMLRVLGNKESLNQFWDFIKNMSNQGCDVDEKAYRAVLGNFKNLKMTS 180
           K+GF+PSS +YSL+LR L + ES+ QFW  I+ M  QG  +D++ Y  +LG FK  KM S
Sbjct: 121 KNGFRPSSAMYSLILRSLVHGESMKQFWVTIRKMKEQGFCIDKETYLTILGVFKKGKMAS 180

Query: 181 EANTWTQYFTKMTKESDTGAXXXXXXXXXLGSDWNYNVKKKLEELK 318
           E    T ++ +M +E+               S W+  V+KKL ELK
Sbjct: 181 EEVALTHFYNRMVQENAMDEVVKKVVELVTMSVWSSEVEKKLGELK 226


>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 79.3 bits (194), Expect = 3e-13
 Identities = 37/107 (34%), Positives = 63/107 (58%)
 Frame = +1

Query: 1   KHGFKPSSMVYSLMLRVLGNKESLNQFWDFIKNMSNQGCDVDEKAYRAVLGNFKNLKMTS 180
           ++GFKPSS +YSLMLR+L  K+S+  FW  ++ M  QG   DE+ Y  +LG F+  +M S
Sbjct: 119 RNGFKPSSPLYSLMLRILVKKDSMKNFWITLRKMKEQGFYTDEETYLTILGVFRKERMDS 178

Query: 181 EANTWTQYFTKMTKESDTGAXXXXXXXXXLGSDWNYNVKKKLEELKV 321
           +A  +  +F +M +E+   +           ++W+  V+K+LE + +
Sbjct: 179 DAVAFKHFFDRMVEENAMDSVVKNVVSVVSATEWSNEVEKELEGMGI 225


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 34/107 (31%), Positives = 60/107 (56%)
 Frame = +1

Query: 1   KHGFKPSSMVYSLMLRVLGNKESLNQFWDFIKNMSNQGCDVDEKAYRAVLGNFKNLKMTS 180
           K+G   SS +YS++LR+    ES+  FW  ++ M  +G  +DE+ Y+ +LG  +  K  +
Sbjct: 114 KNGSTQSSSIYSMLLRIFVQNESMKLFWITLRLMKERGFYLDEETYKTILGVLRKSKKAA 173

Query: 181 EANTWTQYFTKMTKESDTGAXXXXXXXXXLGSDWNYNVKKKLEELKV 321
           +A   T ++ +M +++   +         LGSDW+ +V  KLEEL +
Sbjct: 174 DATGLTHFYNRMLQQNAMDSVVQKVVDIVLGSDWSNDVPGKLEELGI 220


>ref|NP_190408.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75207690|sp|Q9STK5.1|PP269_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g48250, chloroplastic; Flags: Precursor
           gi|4678363|emb|CAB41173.1| putative protein [Arabidopsis
           thaliana] gi|332644870|gb|AEE78391.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 29/105 (27%), Positives = 54/105 (51%)
 Frame = +1

Query: 7   GFKPSSMVYSLMLRVLGNKESLNQFWDFIKNMSNQGCDVDEKAYRAVLGNFKNLKMTSEA 186
           G  PS+ +YS+MLR+L  + S+ +FW  ++ M   G  +DE  Y+ + G     K  ++A
Sbjct: 118 GLSPSTPLYSIMLRILVQQRSMKRFWMTLREMKQGGFYLDEDTYKTIYGELSKEKSKADA 177

Query: 187 NTWTQYFTKMTKESDTGAXXXXXXXXXLGSDWNYNVKKKLEELKV 321
                ++ +M KE+                DW+  V+++L+E+K+
Sbjct: 178 VAVAHFYERMLKENAMSVVAGEVSAVVTKGDWSCEVERELQEMKL 222


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 31/104 (29%), Positives = 56/104 (53%)
 Frame = +1

Query: 10  FKPSSMVYSLMLRVLGNKESLNQFWDFIKNMSNQGCDVDEKAYRAVLGNFKNLKMTSEAN 189
           F+PS  VYSL++R+L  K+++ QFW  ++ M   G  +DE+ Y  +   FK  KM S++ 
Sbjct: 123 FRPSCSVYSLIVRILAAKDTMKQFWVTLRMMKENGFFLDEETYLTISVGFKREKMDSDSV 182

Query: 190 TWTQYFTKMTKESDTGAXXXXXXXXXLGSDWNYNVKKKLEELKV 321
             T ++ +M +E+   +           S+W   V  +L +L++
Sbjct: 183 ALTHFYNRMLEENAMQSVVSNVVGIISRSEWGDEVVGELAKLEI 226