BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00020558
         (1239 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa...   558   e-156
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   554   e-155
ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   553   e-155
emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]       548   e-153
emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]       542   e-152

>gb|ABV24845.1| RNA-dependent RNA polymerase [Nicotiana glutinosa]
            gi|209420668|gb|ACI46982.1| RNA-dependent RNA polymerase
            [Nicotiana glutinosa]
          Length = 1117

 Score =  558 bits (1438), Expect = e-156
 Identities = 267/414 (64%), Positives = 327/414 (78%), Gaps = 2/414 (0%)
 Frame = +3

Query: 3    ELRKKSRIYIPEGRALMGCLDETETLEYGQVFVQVSCVGLKQ--DQYNAFCRAGSDQRSR 176
            +LR +SRI+IP GR +MGCLDE+ TLEYGQVFVQ +  G +Q  ++ + F  +GS     
Sbjct: 690  DLRTRSRIFIPNGRTMMGCLDESRTLEYGQVFVQFTGTGRRQFYEESHPFNDSGSTNCDF 749

Query: 177  IIEGPIVVAKNPCLHPGDVRVLQAVNVPALRHMMDCVVFPQKGIRPHPNECSGSDLDGDI 356
            I+EG +VVAKNPCLHPGD+RVL+AV+VPAL HM+DCVVFPQKG RPHPNECSGSDLDGDI
Sbjct: 750  ILEGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 809

Query: 357  YFVCWDPELIPPRQVEPMDYTPAPPAVVDHDVTMEEVQEYFTNYMVNDSLGVIANAHTAF 536
            YFVCWDP+L+PPRQ +PMDYTPAP   +DHDVT+EEV+EYFTNY+VNDSLG+IANAH  F
Sbjct: 810  YFVCWDPDLVPPRQFQPMDYTPAPSTQLDHDVTIEEVEEYFTNYIVNDSLGIIANAHVVF 869

Query: 537  ADKEPSMAMSGTCKELARLFSIAVDFPKTGVPAEIPSHLRVRECPDFMEKLDKPTYESKR 716
            AD+EP MAMS  CK+LA+LFSIAVDFPKTGVPAEIPS LR +E PDFMEK DKPTY S++
Sbjct: 870  ADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYHSEK 929

Query: 717  VIGKLFREVKDIVPPNSCITSFTWDVAKKCYDKDMEVEGYEDFIDDACHCKDKYDLKLGK 896
            VIGKLF++VKD  P  S I +FT DVA+K YD DM V G+ED+ID+A + K +YD KLG 
Sbjct: 930  VIGKLFQKVKDKTPQASSIANFTMDVARKSYDGDMIVNGFEDYIDEAFYYKSEYDNKLGN 989

Query: 897  LMDYYGVKTEAELLARGIVQASVAFNRKQDVDAIGVALRSLKKEVRTWFEXXXXXXXXXX 1076
            LMDYYG+KTEAE+L+ GI++AS  F+R++D DAIGVA+RSL+KE RTWF+          
Sbjct: 990  LMDYYGIKTEAEILSGGIMKASKTFDRRKDADAIGVAVRSLRKEARTWFK-----RRSDI 1044

Query: 1077 XXXXXXXXXXXXVTYHPSYWGRNNDKVKWDHFLSFPWCVYDKLIHIKRENSKKK 1238
                        VTYH +YWG  N+ +K DHF+SFPWC+YD+LI IK+  ++KK
Sbjct: 1045 DDMLAKASAWYHVTYHHTYWGFYNEGLKRDHFISFPWCIYDQLIQIKKAKARKK 1098


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score =  554 bits (1428), Expect = e-155
 Identities = 271/413 (65%), Positives = 318/413 (76%), Gaps = 2/413 (0%)
 Frame = +3

Query: 3    ELRKKSRIYIPEGRALMGCLDETETLEYGQVFVQVSCVGLKQ--DQYNAFCRAGSDQRSR 176
            ELR K+RI+IP GR++MGCLDET TLE+GQVFV+ S    +   D  + F   G  Q   
Sbjct: 701  ELRTKTRIFIPNGRSMMGCLDETRTLEHGQVFVKFSGSRFRNLYDSSDMFSERGRGQ-CY 759

Query: 177  IIEGPIVVAKNPCLHPGDVRVLQAVNVPALRHMMDCVVFPQKGIRPHPNECSGSDLDGDI 356
            +I+G +VVAKNPCLHPGD+R+L+AV+VPAL HM+DCVVFPQKG RPHPNECSGSDLDGDI
Sbjct: 760  LIKGSVVVAKNPCLHPGDLRILKAVDVPALHHMVDCVVFPQKGPRPHPNECSGSDLDGDI 819

Query: 357  YFVCWDPELIPPRQVEPMDYTPAPPAVVDHDVTMEEVQEYFTNYMVNDSLGVIANAHTAF 536
            YFVCWDPELIP +Q+ PMDYTP PP  +DHDVT+EEV+EYFTNY+VNDSLGVIANAHTA 
Sbjct: 820  YFVCWDPELIPSQQISPMDYTPEPPLQLDHDVTIEEVEEYFTNYIVNDSLGVIANAHTAH 879

Query: 537  ADKEPSMAMSGTCKELARLFSIAVDFPKTGVPAEIPSHLRVRECPDFMEKLDKPTYESKR 716
            ADKE   AMS  C ELAR FSIAVDFPKTGVPAEIPS+LR RE PDFMEK DKP+YES+ 
Sbjct: 880  ADKESLKAMSEPCVELARKFSIAVDFPKTGVPAEIPSNLRAREYPDFMEKPDKPSYESRN 939

Query: 717  VIGKLFREVKDIVPPNSCITSFTWDVAKKCYDKDMEVEGYEDFIDDACHCKDKYDLKLGK 896
            VIGKLFREVKDI P  S I SFT DVA++CYD DMEV+G+ED+IDDA + K  YD KLG 
Sbjct: 940  VIGKLFREVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYKLGN 999

Query: 897  LMDYYGVKTEAELLARGIVQASVAFNRKQDVDAIGVALRSLKKEVRTWFEXXXXXXXXXX 1076
            LM+YYG+KTEAELL+   ++ S +F +K+D +AIG+A+RSLKKE R+WF           
Sbjct: 1000 LMEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQA 1059

Query: 1077 XXXXXXXXXXXXVTYHPSYWGRNNDKVKWDHFLSFPWCVYDKLIHIKRENSKK 1235
                        VTYH +YWG  N+ +  DHFLSFPWCVYDKLI IKR NS +
Sbjct: 1060 DDVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPWCVYDKLIQIKRRNSAR 1112


>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  553 bits (1426), Expect = e-155
 Identities = 267/409 (65%), Positives = 318/409 (77%), Gaps = 2/409 (0%)
 Frame = +3

Query: 3    ELRKKSRIYIPEGRALMGCLDETETLEYGQVFVQVSCVGLKQDQYNA--FCRAGSDQRSR 176
            ELR K+RI++P GR++MGCLDET TLEYG+VFVQ+S  G +Q   ++  F  +GS   + 
Sbjct: 690  ELRTKTRIFVPNGRSMMGCLDETRTLEYGEVFVQISGTGGRQSFGDSLMFRGSGSHHDNF 749

Query: 177  IIEGPIVVAKNPCLHPGDVRVLQAVNVPALRHMMDCVVFPQKGIRPHPNECSGSDLDGDI 356
            I+EG IVVAKNPCLHPGDVRVL AVNVP L HM+DCVVFPQKG RPHPNECSGSDLDGDI
Sbjct: 750  ILEGKIVVAKNPCLHPGDVRVLWAVNVPTLHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 809

Query: 357  YFVCWDPELIPPRQVEPMDYTPAPPAVVDHDVTMEEVQEYFTNYMVNDSLGVIANAHTAF 536
            YFVCWD +LIPP+Q+ PMDYTPAP  V+DHDV +EEV+EYFTNY+VNDSLG+IANAHT F
Sbjct: 810  YFVCWDRDLIPPQQINPMDYTPAPTKVLDHDVMIEEVEEYFTNYIVNDSLGIIANAHTVF 869

Query: 537  ADKEPSMAMSGTCKELARLFSIAVDFPKTGVPAEIPSHLRVRECPDFMEKLDKPTYESKR 716
            ADKE   A    C ELA+LFSIAVDFPKTGVPAEIP +LRV+E PDFMEK DKPTYES+ 
Sbjct: 870  ADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAEIPRNLRVKEYPDFMEKADKPTYESQS 929

Query: 717  VIGKLFREVKDIVPPNSCITSFTWDVAKKCYDKDMEVEGYEDFIDDACHCKDKYDLKLGK 896
            VIGKLFREVKDI P N  I SFT DVA++ YD DMEV G+ED++ DA + K +YD KLG 
Sbjct: 930  VIGKLFREVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYKLGN 989

Query: 897  LMDYYGVKTEAELLARGIVQASVAFNRKQDVDAIGVALRSLKKEVRTWFEXXXXXXXXXX 1076
            LMDYYG+KTE+E+L+  I++ S +F+R++D +AIG+A++SL+KE RTWF           
Sbjct: 990  LMDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEA 1049

Query: 1077 XXXXXXXXXXXXVTYHPSYWGRNNDKVKWDHFLSFPWCVYDKLIHIKRE 1223
                        VTYHP YWG  N+ +  DHFLSFPWCVYDKLIH KR+
Sbjct: 1050 DDVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPWCVYDKLIHTKRK 1098


>emb|CAA09697.1| RNA-directed RNA polymerase [Nicotiana tabacum]
          Length = 1116

 Score =  548 bits (1411), Expect = e-153
 Identities = 262/414 (63%), Positives = 326/414 (78%), Gaps = 2/414 (0%)
 Frame = +3

Query: 3    ELRKKSRIYIPEGRALMGCLDETETLEYGQVFVQVSCVGLKQ--DQYNAFCRAGSDQRSR 176
            +LR ++RI+IP GR +MGCLDE+ TLEYGQVFVQ S  G +Q  ++ + F  +GS     
Sbjct: 689  DLRTRTRIFIPNGRTMMGCLDESRTLEYGQVFVQFSGAGRRQFFEESHPFNDSGSANCDF 748

Query: 177  IIEGPIVVAKNPCLHPGDVRVLQAVNVPALRHMMDCVVFPQKGIRPHPNECSGSDLDGDI 356
            I++G +VVAKNPCLHPGD+RVL+AV+VPAL HM+DCVVFPQKG RPHPNECSGSDLDGDI
Sbjct: 749  ILKGNVVVAKNPCLHPGDIRVLRAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 808

Query: 357  YFVCWDPELIPPRQVEPMDYTPAPPAVVDHDVTMEEVQEYFTNYMVNDSLGVIANAHTAF 536
            YFVCWDP+LIPPRQV+ MDYTPAP   +DHDVT+EEV+EYFTNY++NDSLG+IANAH  F
Sbjct: 809  YFVCWDPDLIPPRQVQSMDYTPAPTTQLDHDVTIEEVEEYFTNYIINDSLGIIANAHVVF 868

Query: 537  ADKEPSMAMSGTCKELARLFSIAVDFPKTGVPAEIPSHLRVRECPDFMEKLDKPTYESKR 716
            AD+EP MAMS  CK+LA+LFSIAVDFPKTGVPAEIPS LR +E PDFMEK DKPTY S++
Sbjct: 869  ADREPDMAMSDPCKQLAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKPTYPSEK 928

Query: 717  VIGKLFREVKDIVPPNSCITSFTWDVAKKCYDKDMEVEGYEDFIDDACHCKDKYDLKLGK 896
            VIGKLF++VK+  P  S I +FT DVA+K YD DM V+G+ED+ID+A + K +YD KLG 
Sbjct: 929  VIGKLFQKVKNKTPQASSIATFTRDVARKSYDSDMIVDGFEDYIDEAFYYKSEYDNKLGN 988

Query: 897  LMDYYGVKTEAELLARGIVQASVAFNRKQDVDAIGVALRSLKKEVRTWFEXXXXXXXXXX 1076
            LMDYYG+KTEAE+L+ GI++AS  F+R++D +AIGVA+R L+KE R WF+          
Sbjct: 989  LMDYYGIKTEAEILSGGIMKASKTFDRRKDAEAIGVAVRCLRKEARAWFK-----RRSDI 1043

Query: 1077 XXXXXXXXXXXXVTYHPSYWGRNNDKVKWDHFLSFPWCVYDKLIHIKRENSKKK 1238
                        VTYH +YWG  N+ +K DHF+SFPWCVYD+LI IK+  ++K+
Sbjct: 1044 DDMLAKASAWYHVTYHHTYWGLYNEGLKRDHFISFPWCVYDQLIQIKKAKARKR 1097


>emb|CAA09896.1| RNA-directed RNA polymerase [Petunia x hybrida]
          Length = 775

 Score =  542 bits (1397), Expect = e-152
 Identities = 262/401 (65%), Positives = 319/401 (79%), Gaps = 2/401 (0%)
 Frame = +3

Query: 3    ELRKKSRIYIPEGRALMGCLDETETLEYGQVFVQVSCVGLKQ--DQYNAFCRAGSDQRSR 176
            +LR ++RI+IP+GR++MGCLDE+ TLEYGQVFVQ +  G +Q  ++ + F  +GS   + 
Sbjct: 380  DLRTRTRIFIPKGRSMMGCLDESRTLEYGQVFVQFTGAGGRQFYEESHHFNDSGSANYNF 439

Query: 177  IIEGPIVVAKNPCLHPGDVRVLQAVNVPALRHMMDCVVFPQKGIRPHPNECSGSDLDGDI 356
            I++G +VVAKNPCLHPGD+RVL+AV+VPAL HM+DCVVFPQKG RPHPNECSGSDLDGDI
Sbjct: 440  ILKGNVVVAKNPCLHPGDIRVLKAVDVPALHHMVDCVVFPQKGKRPHPNECSGSDLDGDI 499

Query: 357  YFVCWDPELIPPRQVEPMDYTPAPPAVVDHDVTMEEVQEYFTNYMVNDSLGVIANAHTAF 536
            YFVCWDP+LIPPRQV+PMDYTPAP   +DHDVT+EEV+EYFTNYMVND LGVIANAH  F
Sbjct: 500  YFVCWDPDLIPPRQVQPMDYTPAPSIQLDHDVTIEEVEEYFTNYMVNDGLGVIANAHVVF 559

Query: 537  ADKEPSMAMSGTCKELARLFSIAVDFPKTGVPAEIPSHLRVRECPDFMEKLDKPTYESKR 716
            AD+EP+MAMS  C ELA+LFSIAVDFPKTGVPAEIPS LR +E PDFMEK DK TY S++
Sbjct: 560  ADREPNMAMSDPCIELAQLFSIAVDFPKTGVPAEIPSQLRPKEYPDFMEKPDKTTYHSEK 619

Query: 717  VIGKLFREVKDIVPPNSCITSFTWDVAKKCYDKDMEVEGYEDFIDDACHCKDKYDLKLGK 896
            VIGKLFREVKD     S IT+FT DVA++ YD D+EV+G+ED+ID+A   K +YD KLG 
Sbjct: 620  VIGKLFREVKDKTTQASSITTFTRDVARRSYDTDLEVDGFEDYIDEAFDYKSEYDKKLGN 679

Query: 897  LMDYYGVKTEAELLARGIVQASVAFNRKQDVDAIGVALRSLKKEVRTWFEXXXXXXXXXX 1076
            LMDYYG+KTEAE L+ GI++AS  F+R++D +AIGVA+RSL+KE RTWF+          
Sbjct: 680  LMDYYGIKTEAETLSGGIMKASKTFDRRRDAEAIGVAVRSLRKEARTWFK-----RRSDI 734

Query: 1077 XXXXXXXXXXXXVTYHPSYWGRNNDKVKWDHFLSFPWCVYD 1199
                        V YHP+YWG  N+ +K DHF+SFPWCVYD
Sbjct: 735  DDLLAKASAWYHVAYHPTYWGCYNEGLKRDHFISFPWCVYD 775