BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00020488
         (1336 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003608531.1| Pentatricopeptide repeat-containing protein ...   452   e-124
ref|XP_002525278.1| GTP binding protein, putative [Ricinus commu...   448   e-123
ref|XP_003550974.1| PREDICTED: pentatricopeptide repeat-containi...   445   e-122
emb|CAN83934.1| hypothetical protein VITISV_035768 [Vitis vinifera]   435   e-119
ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containi...   433   e-119

>ref|XP_003608531.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355509586|gb|AES90728.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 877

 Score =  452 bits (1162), Expect = e-124
 Identities = 219/356 (61%), Positives = 282/356 (79%), Gaps = 2/356 (0%)
 Frame = +3

Query: 3    VMMRSGKYDLVHKFFEKMRRSGEPPKAITYKVLVRAFWEEGKVNEAVEAVRDMERRGVVG 182
            VM++SG YDLVH+ FEKM+R+GE P+A+TYKV+VR FW+EGKV+EAV+AVRDMERRGV+G
Sbjct: 390  VMLQSGNYDLVHELFEKMQRNGEVPEALTYKVMVRTFWKEGKVDEAVKAVRDMERRGVMG 449

Query: 183  TASVYYELACCLCKNGRWKEAMVEVERLKNIRLTKPLEVTFTGMIVSCMDGGHVDDCISV 362
            TASVYYELACCLC  GRW++A +EVE++K +   KPLEVTFTGMI S MDGGH+DDCI +
Sbjct: 450  TASVYYELACCLCNCGRWQDATLEVEKIKRLPHAKPLEVTFTGMIRSSMDGGHIDDCICI 509

Query: 363  FQEMNNHCSPNIGTINAMLKVYGRNDMFAKAKELFEKTKEMQSGLTPDAFTYSSILEASA 542
            F+ M +HC+PN+GT+N MLKVY +NDMF+ AK LFE+ K  +S L PDA+TY+ +LEAS+
Sbjct: 510  FEYMQDHCAPNVGTVNTMLKVYSQNDMFSTAKVLFEEVKVAKSDLRPDAYTYNLMLEASS 569

Query: 543  SAHQWEYFESVYKDMALCGYQLDQNKHAWLLLEASKAGKGHLLEHAFDEILEAGEIPHLT 722
              HQWEYFE VYK+M L GY LDQNKH  LL++AS+AGK HLLEHAFD +LEAGEIPH  
Sbjct: 570  RGHQWEYFEHVYKEMILSGYHLDQNKHLPLLVKASRAGKLHLLEHAFDMVLEAGEIPHHL 629

Query: 723  FFIEMVCEATAQHNYERAVNLLNSMAHASFQVSEKQWTEIFLGCHDRISKDGLQKLFHKL 902
            FF E+V +A AQHNYERA+ LL++MAHA ++V+EKQWTE+F    DRI+ + L++L   L
Sbjct: 630  FFFELVIQAIAQHNYERAIILLSTMAHAPYRVTEKQWTELFKENEDRINHENLKRLLDDL 689

Query: 903  CDSGFVTEATISNLSKALQSICGLVSTAD--SLIAFSKGTTTRLSSNDTLDEEKNG 1064
             +   V+EATISNLS++L  +CGL S+ +  S+I F       L  N+T++  +NG
Sbjct: 690  GNCNVVSEATISNLSRSLHDLCGLGSSRNISSIIPFRSENVDCL--NETINGGENG 743


>ref|XP_002525278.1| GTP binding protein, putative [Ricinus communis]
            gi|223535436|gb|EEF37106.1| GTP binding protein, putative
            [Ricinus communis]
          Length = 1010

 Score =  448 bits (1152), Expect = e-123
 Identities = 219/326 (67%), Positives = 263/326 (80%), Gaps = 3/326 (0%)
 Frame = +3

Query: 3    VMMRSGKYDLVHKFFEKMRRSGEPPKAITYKVLVRAFWEEGKVNEAVEAVRDMERRGVVG 182
            VM+ SGKYDLVH+ F KM RSGE PKA+TYKVLVRAFWEEGKVNEA+EAVRDME RGVVG
Sbjct: 515  VMLNSGKYDLVHELFRKMNRSGEAPKALTYKVLVRAFWEEGKVNEAMEAVRDMENRGVVG 574

Query: 183  TASVYYELACCLCKNGRWKEAMVEVERLKNIRLTKPLEVTFTGMIVSCMDGGHVDDCISV 362
            TAS+YYELACCLC  G W++AM+EV+++KN+R +KPLEVTFTG+I+S +DGGHV DCIS+
Sbjct: 575  TASLYYELACCLCYYGMWQDAMLEVKKMKNLRHSKPLEVTFTGLIMSSLDGGHVSDCISI 634

Query: 363  FQEMNNHCSPNIGTINAMLKVYGRNDMFAKAKELFEKTKEMQSG---LTPDAFTYSSILE 533
            F+ M  +C PNIGTIN MLKVYGRND+F+KAKELF + K   +    L PD FTYSS+LE
Sbjct: 635  FEYMKAYCVPNIGTINIMLKVYGRNDLFSKAKELFGEIKGTNNDGTYLVPDEFTYSSMLE 694

Query: 534  ASASAHQWEYFESVYKDMALCGYQLDQNKHAWLLLEASKAGKGHLLEHAFDEILEAGEIP 713
            ASASA QWEYFE VYK+M  CGYQLDQ KHA LL+EAS+ GK HLLEHAFD  LEAGEIP
Sbjct: 695  ASASALQWEYFELVYKEMTFCGYQLDQKKHASLLVEASRVGKYHLLEHAFDAALEAGEIP 754

Query: 714  HLTFFIEMVCEATAQHNYERAVNLLNSMAHASFQVSEKQWTEIFLGCHDRISKDGLQKLF 893
            H   F EMV +ATAQ NYERAV L+N++A A F++SEKQW ++F    D+I++DGL+KL 
Sbjct: 755  HHLLFTEMVFQATAQQNYERAVVLVNTLALAPFKISEKQWIDLFQKNGDKITQDGLEKLL 814

Query: 894  HKLCDSGFVTEATISNLSKALQSICG 971
              L  S   +E T++NLS+ L S+CG
Sbjct: 815  DALRSSDVASEPTVANLSRTLHSLCG 840


>ref|XP_003550974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
            chloroplastic-like [Glycine max]
          Length = 865

 Score =  445 bits (1145), Expect = e-122
 Identities = 235/465 (50%), Positives = 317/465 (68%), Gaps = 26/465 (5%)
 Frame = +3

Query: 3    VMMRSGKYDLVHKFFEKMRRSGEPPKAITYKVLVRAFWEEGKVNEAVEAVRDMERRGVVG 182
            VM+ SG YDLVH+FF KM+RSGE PKA+TYKVLV+ FW+EGKVNEAV+AVRDMERRGV+G
Sbjct: 368  VMLESGNYDLVHEFFGKMKRSGEVPKALTYKVLVKTFWKEGKVNEAVKAVRDMERRGVIG 427

Query: 183  TASVYYELACCLCKNGRWKEAMVEVERLKNIRLTKPLEVTFTGMIVSCMDGGHVDDCISV 362
            TASVYYELACCLC NGRW++A++EV+ ++++   KPLEVTFTGMI S MDGGH++DCI +
Sbjct: 428  TASVYYELACCLCNNGRWQDAILEVDNIRSLPHAKPLEVTFTGMIKSSMDGGHINDCICI 487

Query: 363  FQEMNNHCSPNIGTINAMLKVYGRNDMFAKAKELFEKTKEMQ-----------SGLTPDA 509
            F+ M  HC PNIG IN MLKVYG+NDMF+KAK LFE+ K  +           S + PD 
Sbjct: 488  FEYMKEHCVPNIGAINTMLKVYGQNDMFSKAKVLFEEVKVAKSEFYATPEGGYSSVVPDV 547

Query: 510  FTYSSILEASASAHQWEYFESVYKDMALCGYQLDQNKHAWLLLEASKAGKGHLLEHAFDE 689
            ++Y+S+LEASA+A QWEYFE VY++M + GYQLDQ+KH  LL++AS+AGK HLLEHAFD 
Sbjct: 548  YSYNSMLEASATAQQWEYFEHVYREMIVSGYQLDQDKHLSLLVKASRAGKLHLLEHAFDM 607

Query: 690  ILEAGEIPHLTFFIEMVCEATAQHNYERAVNLLNSMAHASFQVSEKQWTEIFLGCHDRIS 869
            ILEAGEIPH  FF E+V +A AQHNYERAV L+N+MA+A F+V+EKQWT +F    DRIS
Sbjct: 608  ILEAGEIPHHLFFFELVIQAIAQHNYERAVILINTMAYAPFRVTEKQWTNLFKESEDRIS 667

Query: 870  KDGLQKLFHKLCDSGFVTEATISNLSKALQSICGLVSTAD--SLIAFSKGTTTRLSSNDT 1043
             + L++L   L +   V+E T+SNL+++L  +CGL ++ +  S+I F    +     N+ 
Sbjct: 668  LENLERLLDALGNCDIVSELTVSNLTRSLHVLCGLGTSRNFSSIIPFGSENSVN-GLNEG 726

Query: 1044 LDEEKNGTKTFPSDVVDWNPSSGDL--PSNDVDSRASDSPSSVGNRGKSNDHM------D 1199
            +D++ N  K     +++   S  D+   S   +           N G ++D M       
Sbjct: 727  IDDDGNVPKISRRMMIEGVESKNDILVASYHTEPETIAFSRDQVNGGDNSDVMVFRPQNS 786

Query: 1200 CVEDGRVEY-----ISPSSMVGRNSEDYIEETLDLLTSHVGDSRG 1319
             +EDG+  Y      + +  + ++S++  EE  D  +S   D  G
Sbjct: 787  YIEDGKSLYADSLECTDNLALDKSSDELDEELWDDGSSEDDDGEG 831


>emb|CAN83934.1| hypothetical protein VITISV_035768 [Vitis vinifera]
          Length = 615

 Score =  435 bits (1118), Expect = e-119
 Identities = 224/339 (66%), Positives = 260/339 (76%), Gaps = 12/339 (3%)
 Frame = +3

Query: 96   VLVRAFWEEGKVNEAVEAVRDMERRGVVGTASVYYELACCLCKNGRWKEAMVEVERLKNI 275
            VLVRAFWEEGKVNEAVE VRDMERRGVVG ASVYYELACCLC NGRW++A+VEVE+LK  
Sbjct: 12   VLVRAFWEEGKVNEAVEVVRDMERRGVVGIASVYYELACCLCNNGRWQDAIVEVEKLKKR 71

Query: 276  RLTKPLEVTFTGMIVSCMDGGHVDDCISVFQEMNNHCSPNIGTINAMLKVYGRNDMFAKA 455
              +KPLEVTFTGMI S MDGGH+DDC+S+F+ M  HCSPNIGTINAMLKVYGRNDMF+KA
Sbjct: 72   PHSKPLEVTFTGMITSSMDGGHLDDCLSIFEHMKYHCSPNIGTINAMLKVYGRNDMFSKA 131

Query: 456  KELFEKTKE--------MQSG---LTPDAFTYSSILEASASAHQWEYFESVYKDMALCGY 602
            KELFE+TK         M  G   L PD +TYSS+LEASASAHQWE+FE VYK+M L GY
Sbjct: 132  KELFEETKRSTFASNTCMDDGSISLVPDLYTYSSMLEASASAHQWEFFEYVYKEMTLSGY 191

Query: 603  QLDQNKHAWLLLEASKAGKGHLLEHAFDEILEAGEIPHLTFFIEMVCEATAQHNYERAVN 782
            QLDQ+KHA LL +AS+AGK HLLEHAFD ILEAGEIPH + F EM+C+ATAQHNYERAV 
Sbjct: 192  QLDQSKHALLLGKASRAGKWHLLEHAFDTILEAGEIPHPSIFTEMICQATAQHNYERAVT 251

Query: 783  LLNSMAHASFQVSEKQWTEIFLGCHDRISKDGLQKLFHKLCDSGFVTEATISNLSKALQS 962
            L+N+MAHA F VSEKQWT++F+   DRIS+  L+KL   L +     EAT+SNL K+LQS
Sbjct: 252  LINAMAHAPFVVSEKQWTDLFV-TDDRISRVNLEKLLDSLHNCDVAEEATVSNLYKSLQS 310

Query: 963  ICGLVSTAD-SLIAFSKGTTTRLSSNDTLDEEKNGTKTF 1076
            +CG  ++ D S +AF      R   N    E  +  K F
Sbjct: 311  LCGSGTSMDQSSVAFGDEAMIRTPLNGNSGELDDNKKVF 349


>ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
            chloroplastic-like [Cucumis sativus]
            gi|449499902|ref|XP_004160949.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g67570,
            chloroplastic-like [Cucumis sativus]
          Length = 860

 Score =  433 bits (1114), Expect = e-119
 Identities = 233/458 (50%), Positives = 306/458 (66%), Gaps = 15/458 (3%)
 Frame = +3

Query: 3    VMMRSGKYDLVHKFFEKMRRSGEPPKAITYKVLVRAFWEEGKVNEAVEAVRDMERRGVVG 182
            VM++SGKY+ +H  F KM+++G+  KA TY+VLV+AFWEEG VN A+EAVRDME+RGVVG
Sbjct: 387  VMLKSGKYEQLHNLFTKMKKNGQTLKANTYRVLVKAFWEEGNVNGAIEAVRDMEQRGVVG 446

Query: 183  TASVYYELACCLCKNGRWKEAMVEVERLKNIRLTKPLEVTFTGMIVSCMDGGHVDDCISV 362
            +ASVYYELACCLC NG+W++A+VEVE++K +   KPL VTFTGMI S  +GGH+DDCIS+
Sbjct: 447  SASVYYELACCLCYNGKWQDALVEVEKMKTLSHMKPLVVTFTGMISSSFNGGHIDDCISI 506

Query: 363  FQEMNNHCSPNIGTINAMLKVYGRNDMFAKAKELFEKTKEMQS---------GLTPDAFT 515
            F+ M   C+PNIGTIN MLKVYGRNDM++KAK+LFE+ K              L PD +T
Sbjct: 507  FEYMKQICAPNIGTINTMLKVYGRNDMYSKAKDLFEEIKRKADSSSHDSAVPSLVPDEYT 566

Query: 516  YSSILEASASAHQWEYFESVYKDMALCGYQLDQNKHAWLLLEASKAGKGHLLEHAFDEIL 695
            Y+S+LEA+AS+ QWEYFESVY++MAL GYQLDQ+KHA LL+EASKAGK +LL+HAFD IL
Sbjct: 567  YASMLEAAASSLQWEYFESVYREMALSGYQLDQSKHALLLVEASKAGKWYLLDHAFDTIL 626

Query: 696  EAGEIPHLTFFIEMVCEATAQHNYERAVNLLNSMAHASFQVSEKQWTEIFLGCHDRISKD 875
            EAG+IPH   F EM+ + T Q NYE+AV L+ +M +A FQVSE+QWTE+F G  DRI ++
Sbjct: 627  EAGQIPHPLLFTEMILQLTTQDNYEQAVTLVRTMGYAPFQVSERQWTELFEGNTDRIRRN 686

Query: 876  GLQKLFHKLCDSGFVTEATISNLSKALQSIC--GLVSTADSLIAFSKGTTTRLSSNDTLD 1049
             L++L H L D    +EAT+SNLS++LQS+C   +       +A     T  L   D+ +
Sbjct: 687  NLKQLLHALGDCD-ASEATVSNLSRSLQSLCKFDIPENTSQSVACDHDATDELQLPDSEN 745

Query: 1050 EEKNGTKTFPSDVVDWNPSSGDLPSNDVDSRASDSPSSV----GNRGKSNDHMDCVEDGR 1217
             E         + +D  P      +  V+S +  SP SV    G  G          DG 
Sbjct: 746  MENMKLHPDEDESLDIIPVDHASLNMKVNSESKMSPWSVSISDGALGTGQ-----FSDGS 800

Query: 1218 VEYISPSSMVGRNSEDYIEETLDLLTSHVGDSRGSDLP 1331
                SP  + G + +D  EE L+ L     D+  S+LP
Sbjct: 801  NNVHSPFDLCGESEDD--EEELNTLLDEFDDAYDSNLP 836