BLASTX nr result

ID: Cimicifuga21_contig00020461 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00020461
         (696 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAZ07429.1| hypothetical protein OsI_29683 [Oryza sativa Indi...    74   4e-11
gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group...    70   5e-10
gb|ABA94593.2| retrotransposon protein, putative, unclassified [...    67   3e-09
gb|EEE69906.1| hypothetical protein OsJ_29747 [Oryza sativa Japo...    66   8e-09
gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japo...    66   8e-09

>gb|EAZ07429.1| hypothetical protein OsI_29683 [Oryza sativa Indica Group]
          Length = 318

 Score = 73.6 bits (179), Expect = 4e-11
 Identities = 44/123 (35%), Positives = 62/123 (50%), Gaps = 3/123 (2%)
 Frame = -3

Query: 463 VPSCGRSCGHWLGWSTEFNLEIFSSSDHYITAFVKNLPNGEEWLCTFVHDHPNQPLRAEL 284
           V S G S G  L W   FN+EI S +D +I A+++  P    W  + V+  P    R  +
Sbjct: 40  VDSNGLSGGLALFWHESFNVEIKSVNDRFIDAYIRVSPTAPLWHISCVYGEPRTENRHLM 99

Query: 283 WETFTGLAESHLAPWLILKDLNEITCQHENFSKVYFNPHFAI---VFFNSMFEANFVDLG 113
           W+  + L +S   PW++L D NE   Q E+ SK   NP   I    F + +   N +DLG
Sbjct: 100 WQHLSSLRQSSTLPWVVLGDFNEALWQFEHLSK---NPRSEIQMQAFRDVLDVCNLIDLG 156

Query: 112 FEG 104
           FEG
Sbjct: 157 FEG 159


>gb|AAS55787.1| hypothetical protein [Oryza sativa Japonica Group]
            gi|54291856|gb|AAV32224.1| hypothetical protein [Oryza
            sativa Japonica Group]
          Length = 1936

 Score = 69.7 bits (169), Expect = 5e-10
 Identities = 38/123 (30%), Positives = 63/123 (51%), Gaps = 3/123 (2%)
 Frame = -3

Query: 463  VPSCGRSCGHWLGWSTEFNLEIFSSSDHYITAFVKNLPNGEEWLCTFVHDHPNQPLRAEL 284
            V S G+S G  L W    ++++   +  YI A+V+  P+  +W  TFV+  P    R  +
Sbjct: 694  VSSEGKSGGLALYWDESVSVDVKDINKRYIDAYVRLSPDEPQWHITFVYGEPRVENRHRM 753

Query: 283  WETFTGLAESHLAPWLILKDLNEITCQHENFSKVYFNPHFAIV---FFNSMFEANFVDLG 113
            W     + +S   PW+++ D NE   Q E+FSK   NP        F +++++ +  DLG
Sbjct: 754  WSLLRTIRQSSALPWMVIGDFNETLWQFEHFSK---NPRCETQMQNFRDALYDCDLQDLG 810

Query: 112  FEG 104
            F+G
Sbjct: 811  FKG 813


>gb|ABA94593.2| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1469

 Score = 67.0 bits (162), Expect = 3e-09
 Identities = 44/132 (33%), Positives = 60/132 (45%), Gaps = 1/132 (0%)
 Frame = -3

Query: 580 PTKTTSRL*TRIFTLSKTKANMSTSFTRLMPHACTNSFC-VPSCGRSCGHWLGWSTEFNL 404
           P  T     ++I  LS+T+   +    RL        F  V S G S G  L W    N+
Sbjct: 446 PGATVKEADSQIVFLSETRQK-ADRIRRLRNRLGLRGFAGVDSDGMSGGLALYWHESVNV 504

Query: 403 EIFSSSDHYITAFVKNLPNGEEWLCTFVHDHPNQPLRAELWETFTGLAESHLAPWLILKD 224
           EI +  + YI A+V+  P+G  W  TFV+  P    R  +W     L  S   PWL++ D
Sbjct: 505 EIKALCERYIDAYVRLSPDGPLWHATFVYGEPRVENRHNMWSMLRSLRNSSNLPWLVIGD 564

Query: 223 LNEITCQHENFS 188
            NE   Q E+FS
Sbjct: 565 FNEALWQFEHFS 576


>gb|EEE69906.1| hypothetical protein OsJ_29747 [Oryza sativa Japonica Group]
          Length = 1139

 Score = 65.9 bits (159), Expect = 8e-09
 Identities = 35/116 (30%), Positives = 56/116 (48%)
 Frame = -3

Query: 451 GRSCGHWLGWSTEFNLEIFSSSDHYITAFVKNLPNGEEWLCTFVHDHPNQPLRAELWETF 272
           G   G  L W     +E+ + ++ +I A+V+   +G  W  TFV+  P    R  +W   
Sbjct: 487 GMCGGLALFWHETVYVEVLNMNERHIDAYVRMTVDGPLWHVTFVYGEPCVENRHRMWSLL 546

Query: 271 TGLAESHLAPWLILKDLNEITCQHENFSKVYFNPHFAIVFFNSMFEANFVDLGFEG 104
             + +S   PWL++ D NE+  Q+E+FSK   N      F +++      DLGF G
Sbjct: 547 EDIRQSSDLPWLVMGDFNEVLWQYEHFSKRPRNESQMRAFRDALHSCELHDLGFRG 602


>gb|EEE52364.1| hypothetical protein OsJ_34428 [Oryza sativa Japonica Group]
          Length = 1102

 Score = 65.9 bits (159), Expect = 8e-09
 Identities = 35/92 (38%), Positives = 46/92 (50%)
 Frame = -3

Query: 463 VPSCGRSCGHWLGWSTEFNLEIFSSSDHYITAFVKNLPNGEEWLCTFVHDHPNQPLRAEL 284
           V S G S G  L W    N+EI +  + YI A+V+  P+G  W  TFV+  P    R  +
Sbjct: 492 VDSDGMSGGLALYWHESVNVEIKALCERYIDAYVRLSPDGPLWHATFVYGEPRVENRHNM 551

Query: 283 WETFTGLAESHLAPWLILKDLNEITCQHENFS 188
           W     L  S   PWL++ D NE   Q E+FS
Sbjct: 552 WSMLRSLRNSSNLPWLVIGDFNEALWQFEHFS 583


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