BLASTX nr result
ID: Cimicifuga21_contig00020319
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00020319
(818 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containi... 365 8e-99
emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera] 360 2e-97
ref|XP_002531431.1| pentatricopeptide repeat-containing protein,... 339 4e-91
ref|XP_003593855.1| Pentatricopeptide repeat-containing protein ... 332 6e-89
ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containi... 332 8e-89
>ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 733
Score = 365 bits (936), Expect = 8e-99
Identities = 181/255 (70%), Positives = 212/255 (83%), Gaps = 3/255 (1%)
Frame = -3
Query: 756 VLDSFDRNNCKGES---FKKAEVQIRHPLVREICRLIQLRPSWNPKLEGELKHLLRTLKP 586
VL+SF + E F+ E + RHPLVREICRLI+LR +WNPKLEGEL+HLLR+LKP
Sbjct: 42 VLNSFTGGYRQTEGIRRFEGGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKP 101
Query: 585 PEVCAVLRSQADVRIALSFFYWADRQWRYRHTPEVHYAMLEVLSNTKLCKDTKRVLRFMA 406
+VCAVL+ Q D R+AL FFYWADRQWRYRH P V+YAMLE+LS TKLC+ KRVLR MA
Sbjct: 102 RQVCAVLQLQTDERVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMA 161
Query: 405 RRGIERRPEAFGYVMNSYSRAGKLRSAMRVLNLMQKAGCGPDLSICNTAVHVLVMANRLE 226
+R IERRPEAFGYVM SYSRAGKLR+AMRVL +MQKAG PDLSICNTA+HVLVM NRL+
Sbjct: 162 KRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMMQKAGIEPDLSICNTAIHVLVMGNRLD 221
Query: 225 KALRFVDRMQRVGIAPNVVTYNCLIKGYCDVHRVEDALQLIDEMCCMEPSCRPDKISFYT 46
KA+RF++RMQ V I PNV+TYNCLIKGYCD+HR+EDA++LI EM C PDKIS+YT
Sbjct: 222 KAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEM--PFKGCSPDKISYYT 279
Query: 45 VMGFLCKQKRIKKVK 1
VMGFLCK+KRIK+V+
Sbjct: 280 VMGFLCKEKRIKEVR 294
Score = 62.4 bits (150), Expect = 1e-07
Identities = 39/141 (27%), Positives = 68/141 (48%)
Frame = -3
Query: 492 TPEVHYAMLEVLSNTKLCKDTKRVLRFMARRGIERRPEAFGYVMNSYSRAGKLRSAMRVL 313
TP +++ L + + KR + G F V++ + + L +A+ +L
Sbjct: 484 TPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLL 543
Query: 312 NLMQKAGCGPDLSICNTAVHVLVMANRLEKALRFVDRMQRVGIAPNVVTYNCLIKGYCDV 133
+ M + PD+ T + L R+E+A + +M RVG+ P VTY +I YC +
Sbjct: 544 DDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRM 603
Query: 132 HRVEDALQLIDEMCCMEPSCR 70
RVED L+L+++M + CR
Sbjct: 604 GRVEDLLKLLEKMLSRQ-ECR 623
Score = 59.7 bits (143), Expect = 8e-07
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Frame = -3
Query: 384 PEAFGY--VMNSYSRAGKLRSAMRVLNLMQKAGCGPDLSICNTAVHVLVMANRLEKALRF 211
P A Y +M+ + R GK A ++ M K G P N + L ++++A RF
Sbjct: 448 PNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRF 507
Query: 210 VDRMQRVGIAPNVVTYNCLIKGYCDVHRVEDALQLIDEMCCMEPSCRPDKISFYTVMGFL 31
+++ G A NVV + +I G+C +E AL L+D+M PD +++ T++ L
Sbjct: 508 MEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNK--HPDVVTYTTIIDAL 565
Query: 30 CKQKRIKK 7
K+ RI++
Sbjct: 566 GKKGRIEE 573
>emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
Length = 733
Score = 360 bits (925), Expect = 2e-97
Identities = 179/255 (70%), Positives = 210/255 (82%), Gaps = 3/255 (1%)
Frame = -3
Query: 756 VLDSFDRNNCKGES---FKKAEVQIRHPLVREICRLIQLRPSWNPKLEGELKHLLRTLKP 586
VL+SF + E F+ E + RHPLVREICRLI+LR +WNPKLEGEL+HLLR+LKP
Sbjct: 42 VLNSFTGGYRQTEGIRRFEGGEDESRHPLVREICRLIELRSAWNPKLEGELRHLLRSLKP 101
Query: 585 PEVCAVLRSQADVRIALSFFYWADRQWRYRHTPEVHYAMLEVLSNTKLCKDTKRVLRFMA 406
+VCAVL+ Q D R+AL FFYWADRQWRYRH P V+YAMLE+LS TKLC+ KRVLR MA
Sbjct: 102 RQVCAVLQLQTDERVALRFFYWADRQWRYRHDPIVYYAMLEILSKTKLCQGAKRVLRLMA 161
Query: 405 RRGIERRPEAFGYVMNSYSRAGKLRSAMRVLNLMQKAGCGPDLSICNTAVHVLVMANRLE 226
+R IERRPEAFGYVM SYSRAGKLR+AMR L +MQKAG PDLSICNTA+HVLVM NRL+
Sbjct: 162 KRRIERRPEAFGYVMVSYSRAGKLRNAMRXLTMMQKAGIEPDLSICNTAIHVLVMGNRLD 221
Query: 225 KALRFVDRMQRVGIAPNVVTYNCLIKGYCDVHRVEDALQLIDEMCCMEPSCRPDKISFYT 46
KA+RF++RMQ V I PNV+TYNCLIKGYCD+HR+EDA +LI EM C PDKIS+YT
Sbjct: 222 KAVRFLERMQIVEIXPNVITYNCLIKGYCDLHRLEDAXELIAEM--PFKGCSPDKISYYT 279
Query: 45 VMGFLCKQKRIKKVK 1
VMGFLCK+KRIK+++
Sbjct: 280 VMGFLCKEKRIKELR 294
Score = 60.5 bits (145), Expect = 4e-07
Identities = 39/141 (27%), Positives = 67/141 (47%)
Frame = -3
Query: 492 TPEVHYAMLEVLSNTKLCKDTKRVLRFMARRGIERRPEAFGYVMNSYSRAGKLRSAMRVL 313
TP +++ L + + KR + G F V++ + + L +A+ +L
Sbjct: 484 TPVEINLLIQSLCQEEKVDEAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLL 543
Query: 312 NLMQKAGCGPDLSICNTAVHVLVMANRLEKALRFVDRMQRVGIAPNVVTYNCLIKGYCDV 133
+ M + PD+ T + L R+E+A + +M RVG P VTY +I YC +
Sbjct: 544 DDMYLSNKHPDVVTYTTIIDALGKKGRIEEATKLAMKMLRVGWIPTPVTYRTVIHQYCRM 603
Query: 132 HRVEDALQLIDEMCCMEPSCR 70
RVED L+L+++M + CR
Sbjct: 604 GRVEDLLKLLEKMLSRQ-ECR 623
Score = 59.7 bits (143), Expect = 8e-07
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Frame = -3
Query: 384 PEAFGY--VMNSYSRAGKLRSAMRVLNLMQKAGCGPDLSICNTAVHVLVMANRLEKALRF 211
P A Y +M+ + R GK A ++ M K G P N + L ++++A RF
Sbjct: 448 PNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFPTPVEINLLIQSLCQEEKVDEAKRF 507
Query: 210 VDRMQRVGIAPNVVTYNCLIKGYCDVHRVEDALQLIDEMCCMEPSCRPDKISFYTVMGFL 31
+++ G A NVV + +I G+C +E AL L+D+M PD +++ T++ L
Sbjct: 508 MEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNK--HPDVVTYTTIIDAL 565
Query: 30 CKQKRIKK 7
K+ RI++
Sbjct: 566 GKKGRIEE 573
>ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528950|gb|EEF30943.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 737
Score = 339 bits (870), Expect = 4e-91
Identities = 168/254 (66%), Positives = 205/254 (80%), Gaps = 3/254 (1%)
Frame = -3
Query: 753 LDSFDRNNCKGESFKKAEVQ---IRHPLVREICRLIQLRPSWNPKLEGELKHLLRTLKPP 583
L+S RN + E + E++ RHPLVRE+CRLI+ R +WN KLEG+L+ LLR+LKP
Sbjct: 45 LNSVSRNCGQKEDIWRIEIEEEEFRHPLVREVCRLIERRSAWNAKLEGDLRRLLRSLKPR 104
Query: 582 EVCAVLRSQADVRIALSFFYWADRQWRYRHTPEVHYAMLEVLSNTKLCKDTKRVLRFMAR 403
+VCAVL+ Q+D RIAL FFYWA RQWRYRH P V+Y ML+VLS TKLC+ +RVLR M R
Sbjct: 105 QVCAVLQLQSDERIALDFFYWAGRQWRYRHDPIVYYMMLQVLSKTKLCQGARRVLRLMVR 164
Query: 402 RGIERRPEAFGYVMNSYSRAGKLRSAMRVLNLMQKAGCGPDLSICNTAVHVLVMANRLEK 223
RGI RRPEAF +VM SYSRAGKLR+AM+VL +MQKAG P+L ICNTA+HVLVMAN+LEK
Sbjct: 165 RGIARRPEAFAHVMVSYSRAGKLRNAMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEK 224
Query: 222 ALRFVDRMQRVGIAPNVVTYNCLIKGYCDVHRVEDALQLIDEMCCMEPSCRPDKISFYTV 43
ALRF++RMQ VGI PNVVTYNCLIKGYCD+++VE A++LI EM C PDK+S+YTV
Sbjct: 225 ALRFLERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEM--PFKGCPPDKVSYYTV 282
Query: 42 MGFLCKQKRIKKVK 1
MGFLC+ KRIK+V+
Sbjct: 283 MGFLCQDKRIKEVR 296
Score = 61.6 bits (148), Expect = 2e-07
Identities = 37/154 (24%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Frame = -3
Query: 480 HYAMLEVLSNTKLCKDTKRVLRFMARRGIERRPEAFGY--VMNSYSRAGKLRSAMRVLNL 307
+Y ++ L K K+ + ++ M + + P+ Y +++ S+ G A+ L
Sbjct: 279 YYTVMGFLCQDKRIKEVRNLMEKMVKDN-KLFPDQVTYNTLVHMLSKHGHADEALEFLRE 337
Query: 306 MQKAGCGPDLSICNTAVHVLVMANRLEKALRFVDRMQRVGIAPNVVTYNCLIKGYCDVHR 127
++ G D + V+ M R+++A V+ M G +P+VVTY ++ G C V +
Sbjct: 338 TEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGK 397
Query: 126 VEDALQLIDEMCCMEPSCRPDKISFYTVMGFLCK 25
VE+A +++ +M + C+P+ +S+ ++ LC+
Sbjct: 398 VEEAKKMLQQM--YKHGCKPNTVSYTALLNGLCQ 429
Score = 60.5 bits (145), Expect = 4e-07
Identities = 36/155 (23%), Positives = 73/155 (47%)
Frame = -3
Query: 471 MLEVLSNTKLCKDTKRVLRFMARRGIERRPEAFGYVMNSYSRAGKLRSAMRVLNLMQKAG 292
++ +LS + LR RG + + ++NS+ G++ A ++N M G
Sbjct: 318 LVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKG 377
Query: 291 CGPDLSICNTAVHVLVMANRLEKALRFVDRMQRVGIAPNVVTYNCLIKGYCDVHRVEDAL 112
C PD+ V+ L ++E+A + + +M + G PN V+Y L+ G C +A
Sbjct: 378 CSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAR 437
Query: 111 QLIDEMCCMEPSCRPDKISFYTVMGFLCKQKRIKK 7
++++ E P+ I++ VM L ++ ++ +
Sbjct: 438 EMMN--TSEEDWWTPNAITYSVVMHGLRREGKLSE 470
Score = 57.8 bits (138), Expect = 3e-06
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 2/128 (1%)
Frame = -3
Query: 384 PEAFGY--VMNSYSRAGKLRSAMRVLNLMQKAGCGPDLSICNTAVHVLVMANRLEKALRF 211
P A Y VM+ R GKL A V+ M G P N + L + ++ +A +F
Sbjct: 450 PNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKF 509
Query: 210 VDRMQRVGIAPNVVTYNCLIKGYCDVHRVEDALQLIDEMCCMEPSCRPDKISFYTVMGFL 31
++ G A N V + +I G+C ++ AL L+D+M PD ++F ++ L
Sbjct: 510 MEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNK--HPDAVTFTAIIDAL 567
Query: 30 CKQKRIKK 7
K+ RI++
Sbjct: 568 GKKGRIEE 575
>ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482903|gb|AES64106.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 790
Score = 332 bits (851), Expect = 6e-89
Identities = 161/256 (62%), Positives = 201/256 (78%), Gaps = 5/256 (1%)
Frame = -3
Query: 753 LDSFDRN--NCKGESFKKAEV---QIRHPLVREICRLIQLRPSWNPKLEGELKHLLRTLK 589
+ SFD N N + E+ + E+ + RHP+VRE+CRLI LR +WNPK E L+HLLR+L
Sbjct: 104 ISSFDGNGSNKQRENIARFEIDESEFRHPIVREVCRLISLRSNWNPKFEENLRHLLRSLN 163
Query: 588 PPEVCAVLRSQADVRIALSFFYWADRQWRYRHTPEVHYAMLEVLSNTKLCKDTKRVLRFM 409
P VCAVLRSQ D RIAL FFYWADRQWRYRH V+Y ML++LS T+LC+ +R+LR M
Sbjct: 164 PRLVCAVLRSQDDERIALDFFYWADRQWRYRHDAIVYYTMLDILSKTRLCQGARRILRLM 223
Query: 408 ARRGIERRPEAFGYVMNSYSRAGKLRSAMRVLNLMQKAGCGPDLSICNTAVHVLVMANRL 229
RRGIER PEAF YVM SYSRAG LR+A+R+L LMQKAG PDLSICNTA++VLV N+L
Sbjct: 224 TRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLMQKAGVEPDLSICNTAIYVLVKGNKL 283
Query: 228 EKALRFVDRMQRVGIAPNVVTYNCLIKGYCDVHRVEDALQLIDEMCCMEPSCRPDKISFY 49
EKALRF++RM+ GI P++V+YNCLIKGYCDVHR++DAL+LI EM C PDK+S+Y
Sbjct: 284 EKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEM--PFKGCPPDKVSYY 341
Query: 48 TVMGFLCKQKRIKKVK 1
TVM FLCK +++++VK
Sbjct: 342 TVMAFLCKDRKVEEVK 357
>ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 793
Score = 332 bits (850), Expect = 8e-89
Identities = 160/249 (64%), Positives = 199/249 (79%), Gaps = 3/249 (1%)
Frame = -3
Query: 738 RNNCKGESFKKAEV---QIRHPLVREICRLIQLRPSWNPKLEGELKHLLRTLKPPEVCAV 568
+N+ + +S + E+ + RHP+VRE+CRLI L +WNP EG L+HLLR+LKPP VCAV
Sbjct: 114 KNDKQTQSIARVEIGDSEFRHPVVREVCRLITLSSAWNPNFEGRLRHLLRSLKPPLVCAV 173
Query: 567 LRSQADVRIALSFFYWADRQWRYRHTPEVHYAMLEVLSNTKLCKDTKRVLRFMARRGIER 388
LRSQAD R+AL+FFYWADRQWRY H P V+Y ML+VLS TKLC+ +RVLR M RRGIE
Sbjct: 174 LRSQADERVALNFFYWADRQWRYSHHPVVYYTMLDVLSKTKLCQGARRVLRLMTRRGIEC 233
Query: 387 RPEAFGYVMNSYSRAGKLRSAMRVLNLMQKAGCGPDLSICNTAVHVLVMANRLEKALRFV 208
PEAFGYVM SYSRAGKLR+A+RVL LMQKAG P LSICNT ++VLV +LEKAL+F+
Sbjct: 234 PPEAFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFL 293
Query: 207 DRMQRVGIAPNVVTYNCLIKGYCDVHRVEDALQLIDEMCCMEPSCRPDKISFYTVMGFLC 28
+RMQ GI P++VTYN LIKGYCD++R+EDAL+LI + C PDK+S+YTVMGFLC
Sbjct: 294 ERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGL--PSKGCPPDKVSYYTVMGFLC 351
Query: 27 KQKRIKKVK 1
K+K+I++VK
Sbjct: 352 KEKKIEEVK 360