BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00020279
         (623 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containi...   129   6e-28
ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat...   126   3e-27
ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat...   122   7e-26
emb|CBI34156.3| unnamed protein product [Vitis vinifera]              121   9e-26
ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat...   121   9e-26

>ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
           gi|297735515|emb|CBI17955.3| unnamed protein product
           [Vitis vinifera]
          Length = 627

 Score =  129 bits (323), Expect = 6e-28
 Identities = 60/136 (44%), Positives = 90/136 (66%)
 Frame = +2

Query: 203 LEKLIKQRCRSGDLEVDESFGLFNRLIQLGPTSSILAFNHLLGSIAKMKHYYAVFSLVKM 382
           LE  +K  C+SG ++  E+F +FN LI + PT  I +FN LLG++AK+K Y+ V SL K 
Sbjct: 58  LENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIKRYFDVISLYKR 117

Query: 383 MDSAGIQPNFMTLSILINSFRHLGRIDLGFAVLGNIIKHGFEVNTVVLNTLIKGLCVEDK 562
           M   G+ P+F+TL+ILIN + +L ++D G AVLG +++ G   NTV   +L+KGLC+  +
Sbjct: 118 MSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSR 177

Query: 563 VVEAMELFNKILANGY 610
           + EA  L  K++  GY
Sbjct: 178 ISEATGLLRKMVRMGY 193



 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 38/129 (29%), Positives = 65/129 (50%)
 Frame = +2

Query: 212 LIKQRCRSGDLEVDESFGLFNRLIQLGPTSSILAFNHLLGSIAKMKHYYAVFSLVKMMDS 391
           +I   C +G  E  +  GLFN ++  G   +++ FN L+ ++ K         L+K+M  
Sbjct: 279 IIHGMCHTGRWEGAK--GLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQ 336

Query: 392 AGIQPNFMTLSILINSFRHLGRIDLGFAVLGNIIKHGFEVNTVVLNTLIKGLCVEDKVVE 571
            G  P+  T + LI+ F   GRID    +  ++   G E + V  N LI G C   ++VE
Sbjct: 337 RGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVE 396

Query: 572 AMELFNKIL 598
           A +L+ +++
Sbjct: 397 AKKLYREMM 405



 Score = 55.5 bits (132), Expect = 8e-06
 Identities = 32/132 (24%), Positives = 66/132 (50%)
 Frame = +2

Query: 212 LIKQRCRSGDLEVDESFGLFNRLIQLGPTSSILAFNHLLGSIAKMKHYYAVFSLVKMMDS 391
           +I   C+ G   +D+   LF  +   G +  ++A++ ++  +     +     L   M  
Sbjct: 244 IIDSLCKDG--LIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVD 301

Query: 392 AGIQPNFMTLSILINSFRHLGRIDLGFAVLGNIIKHGFEVNTVVLNTLIKGLCVEDKVVE 571
            G+ PN +T ++LI++    G+++    +L  +I+ G   +T   NTLI G C+E ++ +
Sbjct: 302 EGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDD 361

Query: 572 AMELFNKILANG 607
           A +LF  + + G
Sbjct: 362 ARDLFVSMESKG 373


>ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  126 bits (317), Expect = 3e-27
 Identities = 61/121 (50%), Positives = 86/121 (71%)
 Frame = +2

Query: 248 VDESFGLFNRLIQLGPTSSILAFNHLLGSIAKMKHYYAVFSLVKMMDSAGIQPNFMTLSI 427
           +D++  LFNR++++ P  SI+ F+ LL SI +MKHY  V SL K MDS GI  N  TL+I
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNI 94

Query: 428 LINSFRHLGRIDLGFAVLGNIIKHGFEVNTVVLNTLIKGLCVEDKVVEAMELFNKILANG 607
           LINSF HL R+   F+VLG+I+K G++ +T    TLI+GLCVE K+ EA++LF+K+   G
Sbjct: 95  LINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEG 154

Query: 608 Y 610
           +
Sbjct: 155 F 155



 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 3/182 (1%)
 Frame = +2

Query: 71  MLRNRSVRVFVHPPKVSTTPSPLFRYITI---NPELPSPSYPSNPIHLEKLIKQRCRSGD 241
           MLR R     V   K+ T+ + +  Y T+     ++ S   P N   L  LI   C    
Sbjct: 45  MLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNR 104

Query: 242 LEVDESFGLFNRLIQLGPTSSILAFNHLLGSIAKMKHYYAVFSLVKMMDSAGIQPNFMTL 421
           L    +F +   +++LG   S   F  L+  +           L   M   G QP+ +T 
Sbjct: 105 LGF--AFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTY 162

Query: 422 SILINSFRHLGRIDLGFAVLGNIIKHGFEVNTVVLNTLIKGLCVEDKVVEAMELFNKILA 601
             LIN    +G        L ++ +       VV +T+I  LC + ++ EA+ LF+ +LA
Sbjct: 163 GTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLA 222

Query: 602 NG 607
            G
Sbjct: 223 KG 224


>ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  122 bits (305), Expect = 7e-26
 Identities = 70/183 (38%), Positives = 107/183 (58%)
 Frame = +2

Query: 62  MAAMLRNRSVRVFVHPPKVSTTPSPLFRYITINPELPSPSYPSNPIHLEKLIKQRCRSGD 241
           M  M+    + + +   K+S++P+     +++  +L S S+ S+  H + L         
Sbjct: 1   MMKMMMEMEMEMKMLMTKLSSSPASGTWMLSLPLQLLSSSHSSS-FHSKSLNFNT----- 54

Query: 242 LEVDESFGLFNRLIQLGPTSSILAFNHLLGSIAKMKHYYAVFSLVKMMDSAGIQPNFMTL 421
             +DE+   FNR++ + P  S++ F  +L SIA MKHY  V SL K MDS GI  +  TL
Sbjct: 55  --IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTL 112

Query: 422 SILINSFRHLGRIDLGFAVLGNIIKHGFEVNTVVLNTLIKGLCVEDKVVEAMELFNKILA 601
           +I+INSF HL R+D GF+VL  I K G + +T    TLI+GLCVE K+ EA+ LF+K++ 
Sbjct: 113 AIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVG 172

Query: 602 NGY 610
            G+
Sbjct: 173 EGF 175


>emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  121 bits (304), Expect = 9e-26
 Identities = 67/152 (44%), Positives = 90/152 (59%)
 Frame = +2

Query: 155 INPELPSPSYPSNPIHLEKLIKQRCRSGDLEVDESFGLFNRLIQLGPTSSILAFNHLLGS 334
           ++P LP  S   N  H + L           +D++   FNRL+ + P  SI+ F  LL S
Sbjct: 2   LSPPLPFFSSSQNNFHSKSLHFNT-------LDDALSSFNRLLHMHPPPSIVDFAKLLTS 54

Query: 335 IAKMKHYYAVFSLVKMMDSAGIQPNFMTLSILINSFRHLGRIDLGFAVLGNIIKHGFEVN 514
           IAKMKHY  V SL   MDS G+ PN  TL+ILINSF HL R+   F+VL  I+K G + +
Sbjct: 55  IAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPD 114

Query: 515 TVVLNTLIKGLCVEDKVVEAMELFNKILANGY 610
                TLI+GLCVE K+ EA+ LF+K++  G+
Sbjct: 115 PTTFTTLIRGLCVEGKIGEALHLFDKMIDEGF 146



 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 11/197 (5%)
 Frame = +2

Query: 50  HSSSMAAMLRNRSVRVFVHPP-------KVSTTPSPLFRYITI---NPELPSPSYPSNPI 199
           H +++   L + +  + +HPP       K+ T+ + +  Y T+   + ++ S   P N  
Sbjct: 22  HFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVY 81

Query: 200 HLEKLIKQRCRSGDLEVDESFGLFNRLIQLGPTSSILAFNHLL-GSIAKMKHYYAVFSLV 376
            L  LI   C      V  +F +  ++++LG       F  L+ G   + K   A+    
Sbjct: 82  TLNILINSFCHLN--RVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFD 139

Query: 377 KMMDSAGIQPNFMTLSILINSFRHLGRIDLGFAVLGNIIKHGFEVNTVVLNTLIKGLCVE 556
           KM+D  G QPN +T   LIN    +G       +L ++ +   + + V+  ++I  LC +
Sbjct: 140 KMIDE-GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKD 198

Query: 557 DKVVEAMELFNKILANG 607
            +V EA  LF++++  G
Sbjct: 199 RQVTEAFNLFSQMVGQG 215


>ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  121 bits (304), Expect = 9e-26
 Identities = 67/152 (44%), Positives = 90/152 (59%)
 Frame = +2

Query: 155 INPELPSPSYPSNPIHLEKLIKQRCRSGDLEVDESFGLFNRLIQLGPTSSILAFNHLLGS 334
           ++P LP  S   N  H + L           +D++   FNRL+ + P  SI+ F  LL S
Sbjct: 13  LSPPLPFFSSSQNNFHSKSLHFNT-------LDDALSSFNRLLHMHPPPSIVDFAKLLTS 65

Query: 335 IAKMKHYYAVFSLVKMMDSAGIQPNFMTLSILINSFRHLGRIDLGFAVLGNIIKHGFEVN 514
           IAKMKHY  V SL   MDS G+ PN  TL+ILINSF HL R+   F+VL  I+K G + +
Sbjct: 66  IAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPD 125

Query: 515 TVVLNTLIKGLCVEDKVVEAMELFNKILANGY 610
                TLI+GLCVE K+ EA+ LF+K++  G+
Sbjct: 126 PTTFTTLIRGLCVEGKIGEALHLFDKMIDEGF 157



 Score = 56.2 bits (134), Expect = 5e-06
 Identities = 48/197 (24%), Positives = 90/197 (45%), Gaps = 11/197 (5%)
 Frame = +2

Query: 50  HSSSMAAMLRNRSVRVFVHPP-------KVSTTPSPLFRYITI---NPELPSPSYPSNPI 199
           H +++   L + +  + +HPP       K+ T+ + +  Y T+   + ++ S   P N  
Sbjct: 33  HFNTLDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVY 92

Query: 200 HLEKLIKQRCRSGDLEVDESFGLFNRLIQLGPTSSILAFNHLL-GSIAKMKHYYAVFSLV 376
            L  LI   C      V  +F +  ++++LG       F  L+ G   + K   A+    
Sbjct: 93  TLNILINSFCHLN--RVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFD 150

Query: 377 KMMDSAGIQPNFMTLSILINSFRHLGRIDLGFAVLGNIIKHGFEVNTVVLNTLIKGLCVE 556
           KM+D  G QPN +T   LIN    +G       +L ++ +   + + V+  ++I  LC +
Sbjct: 151 KMIDE-GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKD 209

Query: 557 DKVVEAMELFNKILANG 607
            +V EA  LF++++  G
Sbjct: 210 RQVTEAFNLFSQMVGQG 226