BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00020244
         (358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protei...    65   7e-09
ref|XP_002514843.1| pentatricopeptide repeat-containing protein,...    64   1e-08
gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]             64   1e-08
ref|NP_172730.3| helicase domain and pentatricopeptide repeat-co...    64   1e-08
emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein...    64   1e-08

>emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 44/109 (40%), Positives = 64/109 (58%), Gaps = 9/109 (8%)
 Frame = +1

Query: 37  ANRVDEAIELF*GMSCMGLTPNT-----LIDGLRKVSRFVVSQKIFEDMQSHGQIRNINT 201
           A RVDE +ELF  MS  GL  NT     LI GL +     ++Q+IF++M S G   NI T
Sbjct: 409 AKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMT 468

Query: 202 YGTLMDGLCANGCLS*AMELFCAIEDNRCD-DLQSYHL---GYVQKGKL 336
           Y TL+DGLC NG L  AM +F  ++ ++ +  + +Y++   G  + GK+
Sbjct: 469 YNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 517


>ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545894|gb|EEF47397.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 594

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 12/118 (10%)
 Frame = +1

Query: 37  ANRVDEAIELF*GMSCMGLTPN-----TLIDGLRKVSRFVVSQKIFEDMQSHGQIRNINT 201
           + R+DEA +LF  MS  GLTPN     TLI GL +  R   ++++F+ M SHG   ++ T
Sbjct: 467 SERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLIT 526

Query: 202 YGTLMDGLCANGCLS*AMELFCAIEDNRCDDLQSYHL-------GYVQKGKLRQRKSL 354
           Y TL+ G C +G L  A+ LF A++ ++   L+  H+       G  + GKL   K L
Sbjct: 527 YSTLLSGFCKHGHLDEALALFEALKKSQ---LKPNHVICKILLGGMCKAGKLEDAKEL 581


>gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
 Frame = +1

Query: 28  WLMANRVDEAIELF*GMSCMGLTPNT-----LIDGLRKVSRFVVSQKIFEDMQSHGQIRN 192
           + M  RVD+ +++F  +S  GL  N      L+ G  +  +  +++++F++M SHG + +
Sbjct: 368 YCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPD 427

Query: 193 INTYGTLMDGLCANGCLS*AMELFCAIEDNRCD 291
           + TYG L+DGLC NG L  A+E+F  ++ ++ D
Sbjct: 428 VMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 460


>ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana] gi|332190794|gb|AEE28915.1|
           helicase domain and pentatricopeptide repeat-containing
           protein [Arabidopsis thaliana]
          Length = 735

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
 Frame = +1

Query: 28  WLMANRVDEAIELF*GMSCMGLTPNT-----LIDGLRKVSRFVVSQKIFEDMQSHGQIRN 192
           + M  RVD+ +++F  +S  GL  N      L+ G  +  +  +++++F++M SHG + +
Sbjct: 378 YCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPD 437

Query: 193 INTYGTLMDGLCANGCLS*AMELFCAIEDNRCD 291
           + TYG L+DGLC NG L  A+E+F  ++ ++ D
Sbjct: 438 VMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470


>emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 31/93 (33%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
 Frame = +1

Query: 28  WLMANRVDEAIELF*GMSCMGLTPNT-----LIDGLRKVSRFVVSQKIFEDMQSHGQIRN 192
           + M  RVD+ +++F  +S  GL  N      L+ G  +  +  +++++F++M SHG + +
Sbjct: 378 YCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPD 437

Query: 193 INTYGTLMDGLCANGCLS*AMELFCAIEDNRCD 291
           + TYG L+DGLC NG L  A+E+F  ++ ++ D
Sbjct: 438 VMTYGILLDGLCDNGKLEKALEIFEDLQKSKMD 470