BLASTX nr result
ID: Cimicifuga21_contig00019997
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00019997
(329 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containi... 150 8e-35
emb|CBI30210.3| unnamed protein product [Vitis vinifera] 150 8e-35
emb|CAN82063.1| hypothetical protein VITISV_016431 [Vitis vinifera] 149 2e-34
ref|XP_002323489.1| predicted protein [Populus trichocarpa] gi|2... 132 4e-29
ref|XP_002528626.1| pentatricopeptide repeat-containing protein,... 120 1e-25
>ref|XP_002277923.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g03800-like [Vitis vinifera]
Length = 882
Score = 150 bits (380), Expect = 8e-35
Identities = 68/109 (62%), Positives = 84/109 (77%)
Frame = +2
Query: 2 IWTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCF 181
IWTSMICGYARN QP+ A++LFC+ Q ASTA LG+CG+L H++GKQIHC
Sbjct: 474 IWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCH 533
Query: 182 VYKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGSWNDLIS 328
KSGFLSDLGV N+II+MYSKC +M+D++K FN+MP HDI SWN LI+
Sbjct: 534 ALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIA 582
Score = 73.2 bits (178), Expect = 2e-11
Identities = 39/108 (36%), Positives = 64/108 (59%)
Frame = +2
Query: 5 WTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCFV 184
+T+MI G+A++ + A+ +F RM++ + A L +C L +LG Q+H V
Sbjct: 139 YTAMISGFAKSNRERQAMEIFFRMRSSGIELNEF-SFVAILTVCIRLLDLELGCQLHAIV 197
Query: 185 YKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGSWNDLIS 328
K GFL+ V NA++ +Y KCG ++ ++ F+ MP+ DI SWN +IS
Sbjct: 198 IKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVIS 245
Score = 58.2 bits (139), Expect = 7e-07
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Frame = +2
Query: 5 WTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCFV 184
+ +++ G+ +NG+ A+ FCRM T L CG L + KQIH F+
Sbjct: 372 YNAILSGFCQNGEGSKALAFFCRM-VEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFI 430
Query: 185 YKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGS--WNDLI 325
K GF S+ + A++ M ++CG M D+ K F+ GS W +I
Sbjct: 431 LKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMI 479
>emb|CBI30210.3| unnamed protein product [Vitis vinifera]
Length = 900
Score = 150 bits (380), Expect = 8e-35
Identities = 68/109 (62%), Positives = 84/109 (77%)
Frame = +2
Query: 2 IWTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCF 181
IWTSMICGYARN QP+ A++LFC+ Q ASTA LG+CG+L H++GKQIHC
Sbjct: 492 IWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDKVASTAVLGVCGTLAFHEMGKQIHCH 551
Query: 182 VYKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGSWNDLIS 328
KSGFLSDLGV N+II+MYSKC +M+D++K FN+MP HDI SWN LI+
Sbjct: 552 ALKSGFLSDLGVGNSIITMYSKCSNMDDAIKVFNVMPAHDIVSWNGLIA 600
Score = 73.2 bits (178), Expect = 2e-11
Identities = 39/108 (36%), Positives = 64/108 (59%)
Frame = +2
Query: 5 WTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCFV 184
+T+MI G+A++ + A+ +F RM++ + A L +C L +LG Q+H V
Sbjct: 157 YTAMISGFAKSNRERQAMEIFFRMRSSGIELNEF-SFVAILTVCIRLLDLELGCQLHAIV 215
Query: 185 YKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGSWNDLIS 328
K GFL+ V NA++ +Y KCG ++ ++ F+ MP+ DI SWN +IS
Sbjct: 216 IKMGFLNYTFVSNALMGLYGKCGYLDSVLQLFDEMPHRDIASWNTVIS 263
Score = 58.2 bits (139), Expect = 7e-07
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Frame = +2
Query: 5 WTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCFV 184
+ +++ G+ +NG+ A+ FCRM T L CG L + KQIH F+
Sbjct: 390 YNAILSGFCQNGEGSKALAFFCRM-VEEGVELTDFTLTGVLNACGLLMEAKISKQIHGFI 448
Query: 185 YKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGS--WNDLI 325
K GF S+ + A++ M ++CG M D+ K F+ GS W +I
Sbjct: 449 LKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGSFSQSGSIIWTSMI 497
>emb|CAN82063.1| hypothetical protein VITISV_016431 [Vitis vinifera]
Length = 755
Score = 149 bits (377), Expect = 2e-34
Identities = 69/109 (63%), Positives = 84/109 (77%)
Frame = +2
Query: 2 IWTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCF 181
IWTSMICGYARN QP+ A++LFC+ Q ASTA LG+CG+L H++GKQIHC
Sbjct: 407 IWTSMICGYARNAQPEEAISLFCQSQLEGAMVVDXVASTAVLGVCGTLAFHEMGKQIHCH 466
Query: 182 VYKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGSWNDLIS 328
KSGFLSDLGV N+II+MYSKC +M D++K FN+MP HDI SWN LI+
Sbjct: 467 ALKSGFLSDLGVGNSIITMYSKCSNMXDAIKVFNVMPAHDIVSWNGLIA 515
Score = 69.7 bits (169), Expect = 2e-10
Identities = 38/108 (35%), Positives = 63/108 (58%)
Frame = +2
Query: 5 WTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCFV 184
+T+MI G+A++ + A+ +F RM++ + A L +C L +LG Q+H V
Sbjct: 141 YTAMISGFAKSNRERQAMEIFFRMRSSGIELNEF-SFVAILTVCIRLLDLELGCQLHAIV 199
Query: 185 YKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGSWNDLIS 328
K GFL+ V NA++ +Y KCG ++ ++ F+ M + DI SWN +IS
Sbjct: 200 IKMGFLNYTFVSNALMGLYGKCGYLDXVLQLFDEMXHRDIASWNTVIS 247
Score = 58.5 bits (140), Expect = 5e-07
Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Frame = +2
Query: 5 WTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCFV 184
+ +++ G+ +NG+ A+ FCRM T L CG L + KQIH F+
Sbjct: 305 YNAILSGFCQNGEGSKALAFFCRM-VEEGVELTDFTXTGVLNACGLLMEAKISKQIHGFI 363
Query: 185 YKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGS--WNDLI 325
K GF S+ + A++ M ++CG M D+ K F+ GS W +I
Sbjct: 364 LKFGFGSNACIEAALLDMCTRCGRMADAQKMFSQGXFXQSGSIIWTSMI 412
>ref|XP_002323489.1| predicted protein [Populus trichocarpa] gi|222868119|gb|EEF05250.1|
predicted protein [Populus trichocarpa]
Length = 915
Score = 132 bits (331), Expect = 4e-29
Identities = 61/109 (55%), Positives = 80/109 (73%)
Frame = +2
Query: 2 IWTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCF 181
I TSMICGYARNG P+ A+ LF R Q+ A T+ LG+CG+LG H++GKQIHC
Sbjct: 507 IQTSMICGYARNGLPEEAICLFYRCQSEGTMVLDEVAFTSILGVCGTLGFHEVGKQIHCQ 566
Query: 182 VYKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGSWNDLIS 328
K+GF ++LGV N+IISMYSKC +++D++K FN MP HD+ SWN LI+
Sbjct: 567 ALKTGFHAELGVGNSIISMYSKCYNIDDAIKAFNTMPGHDVVSWNGLIA 615
Score = 60.8 bits (146), Expect = 1e-07
Identities = 32/108 (29%), Positives = 56/108 (51%)
Frame = +2
Query: 5 WTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCFV 184
++++I +++ + A+ LF RM+ + A L C ++G Q+H
Sbjct: 171 YSALISSFSKLNRETEAIQLFFRMRISGIEPNEY-SFVAILTACIRSLELEMGLQVHALA 229
Query: 185 YKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGSWNDLIS 328
K G+ + V NA+I +Y KCG ++ ++ F+ MP DI SWN +IS
Sbjct: 230 IKLGYSQLVFVANALIGLYGKCGCLDHAIHLFDEMPQRDIASWNTMIS 277
Score = 56.6 bits (135), Expect = 2e-06
Identities = 29/108 (26%), Positives = 48/108 (44%)
Frame = +2
Query: 5 WTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCFV 184
W +MI + + A+ LF + + L C A G++IH +
Sbjct: 272 WNTMISSLVKGLSYEKALELFRVLNQNKGFKADQFTLSTLLTACARCHARIQGREIHAYA 331
Query: 185 YKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGSWNDLIS 328
+ G ++L V NAII Y++CG + F MP DI +W ++I+
Sbjct: 332 IRIGLENNLSVSNAIIGFYTRCGSLNHVAALFERMPVRDIITWTEMIT 379
>ref|XP_002528626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223531915|gb|EEF33729.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 537
Score = 120 bits (301), Expect = 1e-25
Identities = 58/109 (53%), Positives = 77/109 (70%)
Frame = +2
Query: 2 IWTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCF 181
I TSM+CGYARNG P+ AV+LF + A T+ LG+CG+LG+ ++G+QIHC
Sbjct: 306 IQTSMLCGYARNGMPNEAVSLFQLSLSEGTMVVDEVALTSVLGVCGTLGSQEMGEQIHCH 365
Query: 182 VYKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPNHDIGSWNDLIS 328
K+GFL+DLGV N+IISMYSKC +M ++K FN M HD+ SWN LI+
Sbjct: 366 ALKTGFLADLGVGNSIISMYSKCCNMNKAIKSFNDMLAHDVVSWNCLIA 414
Score = 57.4 bits (137), Expect = 1e-06
Identities = 29/97 (29%), Positives = 51/97 (52%)
Frame = +2
Query: 5 WTSMICGYARNGQPDNAVTLFCRMQAXXXXXXXXXASTAALGLCGSLGAHDLGKQIHCFV 184
+ +++ G+ NG+ A+ LF +M T+ + CG L ++ +QIH F+
Sbjct: 204 YNALLAGFCNNGEGLKALDLFIKM-VQEGAELSEFTLTSVITACGILRTLEISRQIHGFI 262
Query: 185 YKSGFLSDLGVCNAIISMYSKCGDMEDSVKCFNLMPN 295
K GF S+ + A++ MY++CG M D+ K F P+
Sbjct: 263 MKFGFGSNACIETALLDMYTRCGRMNDADKMFRSWPS 299