BLASTX nr result
ID: Cimicifuga21_contig00019871
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00019871
(1188 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis ... 163 7e-38
emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera] 162 1e-37
ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus ... 160 6e-37
ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycin... 146 1e-32
ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|2... 144 4e-32
>ref|XP_002284795.1| PREDICTED: F-box protein SKIP23-like [Vitis vinifera]
Length = 389
Score = 163 bits (413), Expect = 7e-38
Identities = 117/354 (33%), Positives = 185/354 (52%), Gaps = 12/354 (3%)
Frame = +2
Query: 56 PLPPRRGFVGL*EQDVYEFDLPEA-HQRRLVGSSGNWLITVGLDSKIRLLNPLSRVQLDL 232
P R F L + LPEA H+RR GSS WL+ + +I LLNPL+R ++ L
Sbjct: 60 PHHTHRPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLTRSKVHL 119
Query: 233 PPHTTFDYNNLHSGKPVRGXXXXXXXXXXXXXXCG---VSTPARNRNCLVHKLVISPNPS 403
PP +TF VR G + + R+ + K ++S +P+
Sbjct: 120 PPLSTFP-------NVVRFNFADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSSPA 172
Query: 404 LSSPNRDCIAVAIHHFSRKLAICRPGDSSWVTVQPSMNLFQDVVFYKGQFYAVTHHGLVV 583
S D IAV I + + LA+CR D SW ++ + + +DV+F++G FYAV +G +
Sbjct: 173 NGS---DFIAVVILNQTGDLALCRKSDDSWTFLEDAQSYAEDVIFHRGLFYAVNKYGSIA 229
Query: 584 VINIDDDLQSPTASVV-MPRFELEQLTYEGQKKYLVEWMGELLLIIKFMYHPY--EDYGN 754
V ++ SP S++ MP+ + G +YLVE ELLL+ +++ Y E
Sbjct: 230 VCDVSG--SSPRVSIIEMPQ------QFGGDLQYLVESGEELLLVTRYLDLTYDVEPDQT 281
Query: 755 FSVYHTKEFKVYKLDFTNRKWDLLISLGEYSLFLGISSSVSILASEYYGPVKKNCIYFTD 934
+Y T F+V +LD +W+++ SLG+ +LFLG + S+S+ + ++ G K NCIY+TD
Sbjct: 282 SLIYRTTRFQVCRLDLKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPG-CKGNCIYYTD 340
Query: 935 DYF-PGYRGSGTAGGHDMGVFDMDDKSVQP----HFKGISTSLYSPPIWLIPTP 1081
DY Y G G G D+G+F+++D S++P HF+ + PP+W+ P P
Sbjct: 341 DYSEDNYDGIG--GEQDLGIFNLEDGSIEPLPCSHFR----IRWPPPLWVTPNP 388
>emb|CAN69116.1| hypothetical protein VITISV_031843 [Vitis vinifera]
Length = 389
Score = 162 bits (411), Expect = 1e-37
Identities = 117/354 (33%), Positives = 185/354 (52%), Gaps = 12/354 (3%)
Frame = +2
Query: 56 PLPPRRGFVGL*EQDVYEFDLPEA-HQRRLVGSSGNWLITVGLDSKIRLLNPLSRVQLDL 232
P R F L + LPEA H+RR GSS WL+ + +I LLNPL+R ++ L
Sbjct: 60 PHHTHRPFFSLSLNKFHFLQLPEASHRRRRRGSSHGWLLILDEAPEIFLLNPLTRSKVHL 119
Query: 233 PPHTTFDYNNLHSGKPVRGXXXXXXXXXXXXXXCG---VSTPARNRNCLVHKLVISPNPS 403
PP +TF VR G + + R+ + K ++S +P+
Sbjct: 120 PPLSTFP-------NVVRFNFADVGREYALRTSSGDVYTRSLKKMRDSFIKKTILSSSPA 172
Query: 404 LSSPNRDCIAVAIHHFSRKLAICRPGDSSWVTVQPSMNLFQDVVFYKGQFYAVTHHGLVV 583
S D IAV I + + LA+CR D SW ++ + + +DV+F++G FYAV +G +
Sbjct: 173 NGS---DFIAVVILNQTGDLALCRKSDDSWTFLEDAQSYSEDVIFHRGLFYAVNKYGSIA 229
Query: 584 VINIDDDLQSPTASVV-MPRFELEQLTYEGQKKYLVEWMGELLLIIKFMYHPY--EDYGN 754
V ++ SP S++ MP+ + G +YLVE ELLL+ +++ Y E
Sbjct: 230 VCDVSG--SSPRVSIIEMPQ------QFGGDLQYLVESGEELLLVTRYLDLTYDVEXDQT 281
Query: 755 FSVYHTKEFKVYKLDFTNRKWDLLISLGEYSLFLGISSSVSILASEYYGPVKKNCIYFTD 934
+Y T F+V +LD +W+++ SLG+ +LFLG + S+S+ + ++ G K NCIY+TD
Sbjct: 282 SLIYRTTRFQVCRLDSKAPRWEVVSSLGDRALFLGENLSLSLSSVDFPG-CKGNCIYYTD 340
Query: 935 DYF-PGYRGSGTAGGHDMGVFDMDDKSVQP----HFKGISTSLYSPPIWLIPTP 1081
DY Y G G G D+G+F+++D S++P HF+ + PP+W+ P P
Sbjct: 341 DYSEDNYDGIG--GEQDLGIFNLEDGSIEPLPCSHFR----IRWPPPLWVTPNP 388
>ref|XP_002510618.1| ubiquitin-protein ligase, putative [Ricinus communis]
gi|223551319|gb|EEF52805.1| ubiquitin-protein ligase,
putative [Ricinus communis]
Length = 398
Score = 160 bits (405), Expect = 6e-37
Identities = 112/355 (31%), Positives = 188/355 (52%), Gaps = 17/355 (4%)
Frame = +2
Query: 68 RRGFVGL*EQDVYEFDLPE-AHQRRLVGSSGNWLITVGLDSKIRLLNPLSRVQLDLPPHT 244
RR F L + +LPE ++++R GSS WL+ + I L+NPL+R +L LPP +
Sbjct: 67 RRAFFSLSTNKFHFLNLPEVSYRKRHCGSSHGWLMILDDTPTILLINPLTRAKLSLPPLS 126
Query: 245 TF------DYNNLHSGKPVRGXXXXXXXXXXXXXXCGVSTPARN-RNCLVHKLVISPNPS 403
+F +Y+++ +R V+ R R+ + K+V+S +P
Sbjct: 127 SFPNVISFNYSDIGREYALRNLLGER-----------VTVSLRQMRDSFIRKVVLSSSPL 175
Query: 404 LSSPNRDCIAVAIHHFSRKLAICRPGDSSWVTVQPSMNLFQDVVFYKGQFYAVTHHGLVV 583
+ + + +AI + + LA CR GD SW V+ + + +DV+F G FYAV G +V
Sbjct: 176 ---KDNNFVVIAILNQTDDLAYCRNGDKSWSLVENARSFCEDVIFVNGMFYAVNKAGQIV 232
Query: 584 VINIDDDLQSPTASVV-MPRFELEQLTYEGQKKYLVEWMGELLLIIKFMYHPYE----DY 748
+ +I D SP S + PR G +YLV ELLL+ +++ YE D
Sbjct: 233 ICDISSD--SPRVSFMETPR------QAGGDMQYLVNSGDELLLVTRYLDLEYEFDHPDM 284
Query: 749 GNFSVYHTKEFKVYKLDFTNRKWDLLISLGEYSLFLGISSSVSILASEYYGPVKKNCIYF 928
+Y T F+V++LD+ +W + +LG+ +LF+G +SS+S+ A+++ G NCIY+
Sbjct: 285 EPHLIYRTIRFEVFRLDWNGPQWLRMSTLGDKALFIGENSSLSLSATDFSG-CMGNCIYY 343
Query: 929 TDDYFPGYRGSGTAGGHDMGVFDMDDKSVQP---HFKGISTSL-YSPPIWLIPTP 1081
TDDY G G HD+G+F + D++++P + + ++ L +SPP+W+ P P
Sbjct: 344 TDDYLDA-NYDGHFGDHDLGIFKLCDETIEPLPCYPRNFTSPLQWSPPLWVSPNP 397
>ref|XP_003523538.1| PREDICTED: F-box protein SKIP23-like [Glycine max]
Length = 393
Score = 146 bits (368), Expect = 1e-32
Identities = 111/367 (30%), Positives = 173/367 (47%), Gaps = 20/367 (5%)
Frame = +2
Query: 41 VNVNPPLP----PRRGFVGL*EQDVYEFDLPEAHQRRLVGSSGNWLITVGLDSKIRLLNP 208
+++ P LP RR F L + + +H+ R+ GSS WL+ + +IRLLNP
Sbjct: 45 LHLPPQLPWLMLSRRAFFDLSLNKTHLLNPQPSHRTRICGSSHGWLVMLDETPQIRLLNP 104
Query: 209 LSRVQLDLPPH------TTFDYNNLHSGKPVRGXXXXXXXXXXXXXXCGVSTPARNRNCL 370
L+R LPP FD+ N+ ++ N
Sbjct: 105 LTRATRPLPPLHAFPNVVAFDHANVGREYLIQNPYGGLYAFNLRQMC----------NSF 154
Query: 371 VHKLVISPNPSLSSPNRDCIAVAIHHFSRKLAICRPGDSSWVTV---QPSMNLFQDVVFY 541
+ K+V+S +P+L N D A+AI LA CR G SW+ + + MN ++DVV Y
Sbjct: 155 LGKVVLSASPTL---NDDFAALAIVG-QNNLAFCRNGYDSWIFLNGEEEEMNCWEDVVNY 210
Query: 542 KGQFYAVTHHGLVVVINIDDDLQSPTASVVMPRFELEQLTYEGQKKYLVEWMGELLLIIK 721
G F+AV+ G + V + + P S++ + G Y V G++LL+I+
Sbjct: 211 NGLFFAVSKGGTIAVCDAGEGCFPPRVSIIQTT---TPFGFAGDIHYAVFSAGDMLLLIR 267
Query: 722 FMYHPYEDYGNFS---VYHTKEFKVYKLDFTNRKWDLLISLGEYSLFLGISSSVSILASE 892
+ + D+ VY T F+V+K+++ W + +LGE LF+G +SS+S AS+
Sbjct: 268 VLDQDFSDHAGEESDLVYRTVGFEVFKMNWGLLTWQRVETLGERVLFVGGNSSLSFCASD 327
Query: 893 YYGPVKKNCIYFTDDYFPGYRGSGTAGGHDMGVFDMDDKSVQP----HFKGISTSLYSPP 1060
+ G +CIYFTDDY G HD+GVF + DKS++P + S + P
Sbjct: 328 FVG-CSADCIYFTDDYSES-NDDDACGKHDLGVFRLRDKSIEPLPCFNQNSCSRLRWPLP 385
Query: 1061 IWLIPTP 1081
IW+ P P
Sbjct: 386 IWVSPNP 392
>ref|XP_002300674.1| predicted protein [Populus trichocarpa] gi|222842400|gb|EEE79947.1|
predicted protein [Populus trichocarpa]
Length = 393
Score = 144 bits (363), Expect = 4e-32
Identities = 106/349 (30%), Positives = 172/349 (49%), Gaps = 12/349 (3%)
Frame = +2
Query: 71 RGFVGL*EQDVYEFDLPEA-HQRRLVGSSGNWLITVGLDSKIRLLNPLSRVQLDLPPHTT 247
R F L + +LPEA H+++ GSS WLI + I ++NPL+R ++ LP ++
Sbjct: 67 RAFFNLSTYKFHSLNLPEASHRKKHCGSSHGWLIILDDSPSILVINPLTRRKIHLPAISS 126
Query: 248 F------DYNNLHSGKPVRGXXXXXXXXXXXXXXCGVSTPARNRNCLVHKLVISPNPSLS 409
F DY N+ ++ + R+ + K+V+S +P L
Sbjct: 127 FPNVVSFDYANV----------GREYLLVNPQGERNTASLRQMRDGFIKKVVMSSSP-LE 175
Query: 410 SPNRDCIAVAIHHFSRKLAICRPGDSSWVTVQPSMNLFQDVVFYKGQFYAVTHHGLVVVI 589
+A+AI + LA C+ GD W V+ S + +DV+++ G FYAV G +VV
Sbjct: 176 KKGDFFVAMAILCSTGDLAYCKNGDECWNIVENSRSFSEDVIYFNGLFYAVNKAGQIVVC 235
Query: 590 NIDDDLQSPTASVV-MPRFELEQLTYEGQKKYLVEWMGELLLIIKFMYHPYEDYGNFSVY 766
+++ + SP S + PR G +YLV LLL+ +++ E + +Y
Sbjct: 236 DVNGN--SPKVSFIETPR------QIGGDMQYLVSSGDGLLLVTRYLDLDVE--FDIFIY 285
Query: 767 HTKEFKVYKLDFTNRKWDLLISLGEYSLFLGISSSVSILASEYYGPVKKNCIYFTDDYFP 946
T F+V+KLD +W+ + SLG+ LF+G +SS+++ AS G +CIY+TDDY
Sbjct: 286 KTARFEVFKLDLNGPRWERVTSLGDMMLFIGENSSLALSASGLSG-CMGDCIYYTDDY-S 343
Query: 947 GYRGSGTAGGHDMGVFDMDDKSVQP----HFKGISTSLYSPPIWLIPTP 1081
G G HD+G+F + D S++P S + PP+W+ P P
Sbjct: 344 ANNYDGHIGEHDLGIFKLSDGSIEPLPCYPRNSYSRLQWPPPLWISPNP 392