BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019815
         (3414 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   245   e-170
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ...   218   e-155
emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulga...   225   e-154
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...   211   e-153
gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa ...   214   e-153

>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  245 bits (625), Expect(4) = e-170
 Identities = 120/269 (44%), Positives = 173/269 (64%)
 Frame = +3

Query: 1467 KHGLMAIKLDMSKAFDRVNWKTLLSMQKLLGFHTKWCHLVNQCISSSNFSIILNGSPEGH 1646
            K G + +KLDMSKA+DRV W  L +M   LGF T++  LV  C++S+ FS+++NG P  +
Sbjct: 576  KKGYLGLKLDMSKAYDRVEWCFLENMMLKLGFPTRYTKLVMNCVTSARFSVLVNGQPSRN 635

Query: 1647 FHSTRGLRQGDPLSPTLFIICMELLSRLLQEKQNQGKLQGAKISKNGPEITHLLFADDIF 1826
            F  +RGLRQGDPLSP LF++C E LS LL++ + +  + G KI      I+HL FADD  
Sbjct: 636  FFPSRGLRQGDPLSPFLFVVCAEGLSTLLRDAEEKKVIHGVKIGHRVSPISHLFFADDSL 695

Query: 1827 LFYRATITDALEISDTLKTFSAMTGQTINGDKSGVFFSKTLPKRHTNILRKILKVKAIGL 2006
            LF RAT  +   + D L T+ A +GQ +N +KS + +S+ L     N L+  L  K +  
Sbjct: 696  LFIRATEEEVENVMDILSTYEAASGQKLNMEKSEMSYSRNLEPDKINTLQMKLAFKTVEG 755

Query: 2007 KDMYLGTPLFLGHSKTNMFEFIITRVKSRINGWKSKLLSQAGRSILIKSVTSTIPTYHMS 2186
             + YLG P F+G SK  +F+ I  RV  ++ GWK K LSQAGR +LIK+V   IPTY M 
Sbjct: 756  HEKYLGLPTFIGSSKKRVFQAIQDRVWKKLKGWKGKYLSQAGREVLIKAVAQAIPTYAMQ 815

Query: 2187 CFILPKNITNRLDALQRDFWWGKKENGKK 2273
            CF++PK+I + ++ + R+F+WG+KE  ++
Sbjct: 816  CFVIPKSIIDGIEKMCRNFFWGQKEEERR 844



 Score =  167 bits (424), Expect(4) = e-170
 Identities = 93/283 (32%), Positives = 145/283 (51%)
 Frame = +1

Query: 607  LSDWNKESFGAVGTKFLKLVQSIESCQKLLPSNSNILQENSLKIDLALAQKNEEMFWKQK 786
            L  W+K+ FG V  +       ++   +  PS  NI+   +L   +   +K EE++W Q+
Sbjct: 289  LLSWSKQKFGHVAKEIRMCQHQMKVLMESEPSEDNIMHMRALDARMDELEKREEVYWHQR 348

Query: 787  SRDKWIPLGFERNTKKFHATTICXXXXXXINGILSSGGEWETSRKIIAKTLVDHFSFLLA 966
            SR  WI  G ++NTK FH           +  I +  GEW      + +    +F  L  
Sbjct: 349  SRQDWIKSG-DKNTKFFHQKASHREQRNNVRRIRNEAGEWFEDEDDVTECFAHYFENLFQ 407

Query: 967  EDMPNPLEIPSHLVEKIITPMDNSRLLTLPSLEEIRFVTFSIGALKAPGPDGFPGIFFHN 1146
                  ++   ++V+  IT    ++L      EE+      +   KAPGPDG   +F+ +
Sbjct: 408  SGNNCEMDPILNIVKPQITDELGTQLDAPFRREEVSAALAQMHPNKAPGPDGMNALFYQH 467

Query: 1147 AWDLIHQQVLTMVTIFFYQGHDLEHLNHTNIALIPKKNHPKNPNDFRPISLCNVAYKIIT 1326
             WD I + V T V        ++  +N T+I LIPKK H ++P DFRPISLCNV YKI+ 
Sbjct: 468  FWDTIGEDVTTKVLNMLNNVDNIGAVNQTHIVLIPKKKHCESPVDFRPISLCNVLYKIVA 527

Query: 1327 KIISNRLRPLLHKIISPMQSAFVKNRLISDNIAIAHEIIHTIR 1455
            K+++NR++ +L  +I   QS FV  RLI+DN+ +A+E  H +R
Sbjct: 528  KVLANRMKMVLPMVIHESQSGFVPGRLITDNVLVAYECFHFLR 570



 Score =  144 bits (362), Expect(4) = e-170
 Identities = 100/346 (28%), Positives = 159/346 (45%), Gaps = 8/346 (2%)
 Frame = +1

Query: 2290 AWKDICSPTRNGGLGFRTFENSNKAYLSKIVWRLLTKPDDLWSQILKHKYFAKIKASLAN 2469
            AW+ +  P + GGLG R F+  N+A L+K  WR+LTKPD L ++++K KYF +     A 
Sbjct: 849  AWEKLFLPKKEGGLGIRNFDVFNRALLAKQAWRILTKPDSLMARVIKGKYFPRSNFLEAR 908

Query: 2470 TSKKNCSWFWQCCKKGIGTILNNAIWEVGSGKNINIWTEPWVPN--GNSTLPIFGPAPPN 2643
             S  N S+  +        I       +G G++  IW +PWVP+    S     G +  +
Sbjct: 909  VS-PNMSFTCKSILSARAVIQKGMCRVIGDGRDTTIWGDPWVPSLERYSIAATEGVSEDD 967

Query: 2644 APQNVSDLFIPRTKIWNMSLLRKYFNHFIISKIILIFGKTNSTIDILKWGGTKNGEFSVK 2823
             PQ V +L       WN+ LL   F  +  + I  I        D   W  +KNG+F+V+
Sbjct: 968  GPQKVCELI--SNDRWNVELLNTLFQPWESTAIQRIPVALQKKPDQWMWMMSKNGQFTVR 1025

Query: 2824 S-QYHILMTD-----SISQIPLELSKCFLQLWQIKGHPKSTLFAWKCLHDIIPTRERLNR 2985
            S  YH L+ D     S S+ P    K + ++W+ K  PK  LF+WK +H+ +     + +
Sbjct: 1026 SAYYHELLEDRKTGPSTSRGP--NLKLWQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRK 1083

Query: 2986 IFPIPDKKCIFCKSQNETLHHLLIGCPYTKAVWLSSTWGLNLDQFKHLSVQQFVHIWIKP 3165
                 D  C  C  + ET  HL+ GC  +   W  S   ++    +  S +    IW++ 
Sbjct: 1084 RGMNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNIEAGSFR----IWVES 1139

Query: 3166 PISWEGDTTHWNQMFIFTFWCIWKERCACIFSGQKITSPNILSKNI 3303
             +    DT  W  +F    W IW  R   +F  +K+    ++ + +
Sbjct: 1140 LLDTHKDTEWW-ALFWMICWNIWLGRNKWVFEKKKLAFQEVVERAV 1184



 Score =  115 bits (287), Expect(4) = e-170
 Identities = 63/172 (36%), Positives = 90/172 (52%), Gaps = 5/172 (2%)
 Frame = +2

Query: 53  WSASFFYGSPYTPLKEASWKLLELQHTGHAHPRLIIGDLNLILHSKDKIGGDQFDYKQVD 232
           W  +  YG P    K+ +  LL         P L  GD NL+L + +K GGD F+ ++ D
Sbjct: 105 WRFTGIYGYPEEEHKDKTGALLSALARASRRPWLCGGDFNLMLVASEKKGGDGFNSREAD 164

Query: 233 FAHDFIQQEGLMDLGYSGNDFTWNNEREGNANIKQRLDRGLANSDWVLLFPDNTLSHLPR 412
              + +++   MDLG+ G +FTW N R G+ANI++RLDR +AN  W + FP + +SHLP+
Sbjct: 165 IFRNAMEECHFMDLGFVGYEFTWTNNRGGDANIQERLDRFVANDLWKIKFPGSFVSHLPK 224

Query: 413 IQSDHCPIVLDTNPEAHIG-----PKPFHFQAMWLDHIDYPSVLLRGWSPNT 553
            +SDH PIV                K F F+AMWL   +   V+   W   T
Sbjct: 225 RKSDHVPIVASVKGAQSAATRTKKSKRFRFEAMWLREGESDEVVKETWMRGT 276


>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1747

 Score =  218 bits (556), Expect(4) = e-155
 Identities = 106/264 (40%), Positives = 161/264 (60%)
 Frame = +3

Query: 1479 MAIKLDMSKAFDRVNWKTLLSMQKLLGFHTKWCHLVNQCISSSNFSIILNGSPEGHFHST 1658
            +A+KLDM+KA+DRV W  L  M +++GF  ++  L+  C+ S  +S++L G+P G    +
Sbjct: 859  IALKLDMTKAYDRVEWGFLQRMMEVMGFPDRFVFLIMDCVKSVTYSVLLQGAPFGKIKPS 918

Query: 1659 RGLRQGDPLSPTLFIICMELLSRLLQEKQNQGKLQGAKISKNGPEITHLLFADDIFLFYR 1838
            RGLRQGDP+SP LF+I  E LS L+++ + + ++ G  I++  P ++HL +ADD  LF  
Sbjct: 919  RGLRQGDPISPYLFLIVAEGLSALIRKAEREQQIHGVAIARGAPSVSHLFYADDSLLFCD 978

Query: 1839 ATITDALEISDTLKTFSAMTGQTINGDKSGVFFSKTLPKRHTNILRKILKVKAIGLKDMY 2018
            AT+TD + + +   T+ A +GQ IN DKS + FS   P         IL +  +   + Y
Sbjct: 979  ATVTDCMALKNIFSTYEAASGQKINKDKSAICFSPKSPAAIKEACSAILDMPVVPCHERY 1038

Query: 2019 LGTPLFLGHSKTNMFEFIITRVKSRINGWKSKLLSQAGRSILIKSVTSTIPTYHMSCFIL 2198
            LG P   G  K  +F+ +  RV +R++GW+ KLLS+AG+ +LIK+V   IP Y MS F L
Sbjct: 1039 LGLPTVSGKDKKKLFQSLPDRVWNRVHGWEGKLLSKAGKEVLIKTVAQAIPNYTMSVFQL 1098

Query: 2199 PKNITNRLDALQRDFWWGKKENGK 2270
            P   ++ ++     FWWG KE GK
Sbjct: 1099 PAGTSDAINKCVARFWWG-KEGGK 1121



 Score =  167 bits (424), Expect(4) = e-155
 Identities = 96/288 (33%), Positives = 147/288 (51%)
 Frame = +1

Query: 607  LSDWNKESFGAVGTKFLKLVQSIESCQKLLPSNSNILQENSLKIDLALAQKNEEMFWKQK 786
            L  WN+E+FG+V  K   L + ++  Q+  P+++ I + N ++  L    + EE+ WKQ+
Sbjct: 568  LKRWNQETFGSVKKKVASLREELDVLQRQPPTSNIICKRNEVECLLDGVLEREELLWKQR 627

Query: 787  SRDKWIPLGFERNTKKFHATTICXXXXXXINGILSSGGEWETSRKIIAKTLVDHFSFLLA 966
            +R  W   G +RNT+ FH T         I GIL     W +    I    V +F  L  
Sbjct: 628  ARVSWFKCG-DRNTQFFHQTAKQRGRSNRICGILGEDNRWRSDVTDIGCVFVSYFRNLFT 686

Query: 967  EDMPNPLEIPSHLVEKIITPMDNSRLLTLPSLEEIRFVTFSIGALKAPGPDGFPGIFFHN 1146
                +  E     V   +       L  +   EEI      +   K+PG DG P  FF  
Sbjct: 687  AGGGSMDETIFEAVTSRVDATSKKSLDQVYRREEIELALKDMNPSKSPGSDGMPARFFQK 746

Query: 1147 AWDLIHQQVLTMVTIFFYQGHDLEHLNHTNIALIPKKNHPKNPNDFRPISLCNVAYKIIT 1326
             W++I   V+ +   F      +   NH+ IALIPK  +PK   ++RPISLCNV YK+++
Sbjct: 747  FWNIIGNDVVDVCLRFLNGDGSIADFNHSLIALIPKVQNPKKVTEYRPISLCNVVYKLVS 806

Query: 1327 KIISNRLRPLLHKIISPMQSAFVKNRLISDNIAIAHEIIHTIRSGEKN 1470
            K+++NRL+ +L ++I+  QSAF+  R+I DNI  A EIIH ++   K+
Sbjct: 807  KVLANRLKSVLPEVIAENQSAFMSQRIIHDNIIAAFEIIHCLKRRGKD 854



 Score =  128 bits (322), Expect(4) = e-155
 Identities = 97/348 (27%), Positives = 147/348 (42%), Gaps = 6/348 (1%)
 Frame = +1

Query: 2278 LYLKAWKDICSPTRNGGLGFRTFENSNKAYLSKIVWRLLTKPDDLWSQILKHKYFA---K 2448
            ++ + W D+C   ++GGLGFR     N+A L K  WRL+  PD L +++LK KYF     
Sbjct: 1123 IHWRRWSDLCFSKKDGGLGFRDLSLFNQALLGKQGWRLMMYPDSLVARMLKAKYFPWDDF 1182

Query: 2449 IKASLANTSKKNCSWFWQCCKKGIGTILNNAIWEVGSGKNINIWTEPWVPNGNSTLPIFG 2628
            ++A L ++     S+ W+    G   +     W +G GK + ++ +PWVP   S  PI  
Sbjct: 1183 MEAELGSSP----SYLWRSFLWGRELLRKGVRWRIGDGKEVRVFIDPWVPGLPSFRPILR 1238

Query: 2629 PAPPNAPQNVSDLFIPRTKIWNMSLLRKYFNHFIISKIILIFGKTNSTIDILKWGGTKNG 2808
               P     VSDL +     WNM  L  +F       I  I        D+  W   KNG
Sbjct: 1239 QGAP-LFLRVSDL-LHNNGGWNMEALNYWFTDDECEAISSITVGATRRPDVYMWNYCKNG 1296

Query: 2809 EFSVKSQYHILMTDSISQ---IPLELSKCFLQLWQIKGHPKSTLFAWKCLHDIIPTRERL 2979
             ++VKS Y +   ++  +   I L     +  LW++K  PK   F W+C    IP  E L
Sbjct: 1297 RYTVKSGYWLACEENREEAINIVLAPRNFWKHLWKLKLPPKINHFLWRCSMGFIPCMEVL 1356

Query: 2980 NRIFPIPDKKCIFCKSQNETLHHLLIGCPYTKAVWLSSTWGLNLDQFKHLSVQQFVHIWI 3159
                      C  C+   E+  H   GC    AV+  + +   L   +  S   F+H+  
Sbjct: 1357 LWKHIAHSASCFRCQQGRESPVHATWGCSCCVAVFERAGFYSKLSSGQFPS---FIHLLH 1413

Query: 3160 KPPISWEGDTTHWNQMFIFTFWCIWKERCACIFSGQKITSPNILSKNI 3303
                + + +     Q+F    W  W ER  C   G  + S  I    +
Sbjct: 1414 HAFSTLDKEEL---QLFAVLLWLNWHERNNCYHKGAVVPSDIIYENGV 1458



 Score =  105 bits (263), Expect(4) = e-155
 Identities = 56/163 (34%), Positives = 83/163 (50%), Gaps = 5/163 (3%)
 Frame = +2

Query: 68  FYGSPYTPLKEASWKLLELQHTGHAHPRLIIGDLNLILHSKDKIGGDQFDYKQVDFAHDF 247
           FYG P T  +  SW LL       + P L  GD N IL   +K G  Q   +Q+D     
Sbjct: 388 FYGHPETSQRHLSWDLLRSLRRVCSEPWLCCGDFNEILDFNEKTGAVQRSQRQIDGFRHA 447

Query: 248 IQQEGLMDLGYSGNDFTWNNEREGNANIKQRLDRGLANSDWVLLFPDNTLSHLPRIQSDH 427
           ++  GL +  ++G  +TW+N R+G+AN+K+RLDRG  N   +  +   +  HL  + SDH
Sbjct: 448 VEDCGLYEFAFTGFQYTWDNRRKGDANVKERLDRGFGNLALIQQWGGISCHHLVSMSSDH 507

Query: 428 CPIVLDTNPEAHIG-----PKPFHFQAMWLDHIDYPSVLLRGW 541
           CP++ + +P    G      + F F+ MWL H     V+ R W
Sbjct: 508 CPLLFENDPPMSRGGNWRRKRRFLFEDMWLTHEGCRGVVERQW 550


>emb|CCA66040.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1362

 Score =  225 bits (574), Expect(4) = e-154
 Identities = 108/269 (40%), Positives = 164/269 (60%)
 Frame = +3

Query: 1467 KHGLMAIKLDMSKAFDRVNWKTLLSMQKLLGFHTKWCHLVNQCISSSNFSIILNGSPEGH 1646
            K+G+ A+KLDMSKA+DRV W  L  + K +GF   W   V  CISS +F+  +NG  EG 
Sbjct: 570  KNGVCALKLDMSKAYDRVEWCFLERVMKKMGFCDGWIDRVMACISSVSFTFNVNGVVEGS 629

Query: 1647 FHSTRGLRQGDPLSPTLFIICMELLSRLLQEKQNQGKLQGAKISKNGPEITHLLFADDIF 1826
               +RGLRQGDP+SP LF++C +  S LL +  ++ K+ GA+I +  P ++HL FADD  
Sbjct: 630  LSPSRGLRQGDPISPYLFLLCADAFSTLLSKAASEKKIHGAQICRGAPVVSHLFFADDSI 689

Query: 1827 LFYRATITDALEISDTLKTFSAMTGQTINGDKSGVFFSKTLPKRHTNILRKILKVKAIGL 2006
            LF +A++ +   ++D +  +   +GQ +N  K+ V FS+++ +   + +  +L VK +  
Sbjct: 690  LFTKASVQECSMVADIISKYERASGQQVNLSKTEVVFSRSVDRERRSAIVNVLGVKEVDR 749

Query: 2007 KDMYLGTPLFLGHSKTNMFEFIITRVKSRINGWKSKLLSQAGRSILIKSVTSTIPTYHMS 2186
            ++ YLG P  +G SK   F  I  R+  ++ GWK KLLS+ G+ +LIKSV   IPTY MS
Sbjct: 750  QEKYLGLPTIIGRSKKVTFACIKERIWKKLQGWKEKLLSRPGKEVLIKSVAQAIPTYMMS 809

Query: 2187 CFILPKNITNRLDALQRDFWWGKKENGKK 2273
             F LP  + + + +L   FWWG  +  +K
Sbjct: 810  VFSLPSGLIDEIHSLLARFWWGSSDTNRK 838



 Score =  171 bits (434), Expect(4) = e-154
 Identities = 101/288 (35%), Positives = 155/288 (53%)
 Frame = +1

Query: 607  LSDWNKESFGAVGTKFLKLVQSIESCQKLLPSNSNILQENSLKIDLALAQKNEEMFWKQK 786
            LS W  ++FG +  +  + +  +   Q+  P  S + Q   +  DL    + EE +W  +
Sbjct: 283  LSTWATKTFGNLKKRKKEALTLLNGLQQRDPDASTLEQCRIVSGDLDEIHRLEESYWHAR 342

Query: 787  SRDKWIPLGFERNTKKFHATTICXXXXXXINGILSSGGEWETSRKIIAKTLVDHFSFLLA 966
            +R   I  G ++NTK FH           IN +L   G W+  R+ I   +  +F  L A
Sbjct: 343  ARANEIRDG-DKNTKYFHHKASQRKRRNTINELLDENGVWKKGREEICGVVQHYFEGLFA 401

Query: 967  EDMPNPLEIPSHLVEKIITPMDNSRLLTLPSLEEIRFVTFSIGALKAPGPDGFPGIFFHN 1146
             D P  +E+    +   ++   N+ LL LPS +E++   F++   KAPG DG   +FF  
Sbjct: 402  TDSPVNMELALEGLSHCVSTDMNTALLMLPSGDEVKEALFAMHPNKAPGIDGLHALFFQK 461

Query: 1147 AWDLIHQQVLTMVTIFFYQGHDLEHLNHTNIALIPKKNHPKNPNDFRPISLCNVAYKIIT 1326
             W ++   V++ V  ++    DL  +N T I LIPK +HP++  DFRPISLC V YKI++
Sbjct: 462  FWHILGSDVISFVQSWWRGMGDLGVVNKTCIVLIPKCDHPQSMKDFRPISLCTVLYKILS 521

Query: 1327 KIISNRLRPLLHKIISPMQSAFVKNRLISDNIAIAHEIIHTIRSGEKN 1470
            K ++NRL+ +L  IISP QSAFV  RLI+DN  +A EI H ++  + N
Sbjct: 522  KTLANRLKVILPAIISPNQSAFVPRRLITDNALVAFEIFHAMKRKDAN 569



 Score =  113 bits (282), Expect(4) = e-154
 Identities = 92/390 (23%), Positives = 158/390 (40%), Gaps = 14/390 (3%)
 Frame = +1

Query: 2278 LYLKAWKDICSPTRNGGLGFRTFENSNKAYLSKIVWRLLTKPDDLWSQILKHKYFAKIKA 2457
            ++  +W  +C P   GGLGFR     N++ L+K  WRL T    L  ++L+ +YF K   
Sbjct: 839  MHWHSWDTLCYPKSMGGLGFRDLHCFNQSLLAKQAWRLCTGDQTLLYRLLQARYF-KSSE 897

Query: 2458 SLANTSKKNCSWFWQCCKKGIGTILNNAIWEVGSGKNINIWTEPWVPNGNSTLPIFGPAP 2637
             L      N S+ W+        +L    W VGSG+ I +W + W+    + +     A 
Sbjct: 898  LLEARRGYNPSFTWRSIWGSKSLLLEGLKWCVGSGERIRVWEDAWILGEGAHMVPTPQAD 957

Query: 2638 PNAPQNVSDLFIPRTKIWNMSLLRKYFNHFIISKIILIFGKTNSTIDILKWGGTKNGEFS 2817
             N    V DL       WN+  +++ F       ++ I        D   W  ++NG FS
Sbjct: 958  SNLDLKVCDLIDVARGAWNIESVQQTFVEEEWELVLSIPLSRFLPDDHRYWWPSRNGIFS 1017

Query: 2818 VKSQYHILMTDSISQIPLEL----SKCFLQLWQIKGHPKSTLFAWKCLHDIIPTRERLNR 2985
            V+S Y +     +    L+     ++ + ++WQ++G PK + F W+     +  + RL  
Sbjct: 1018 VRSCYWLGRLGPVRTWQLQHGERETELWRRVWQLQGPPKLSHFLWRACKGSLAVKGRLFS 1077

Query: 2986 IFPIPDKKCIFCKSQNETLHHLLIGCPYTKAVWLSSTWGLNLDQFKHLSVQQFVHIWIKP 3165
                 D  C  C   +E+++H L  C + +A+W                V  F  + +  
Sbjct: 1078 RHISVDATCSVCGDPDESINHALFDCTFARAIW---------------QVSGFASLMMNA 1122

Query: 3166 PISWEGDTTHW----------NQMFIFTFWCIWKERCACIFSGQKITSPNILSKNINLQM 3315
            P+S   +   W            M  F  W  W  R   IF  +   +P +++K  +   
Sbjct: 1123 PLSSFSERLEWLAKHATKEEFRTMCSF-MWAGWFCRNKLIFENELSDAP-LVAKRFS--- 1177

Query: 3316 KLFFKMDEWDLNINNNLATHSFSTSYWTPP 3405
            KL     E+  ++         S++ W+PP
Sbjct: 1178 KLVADYCEYAGSVFRGSGGGCGSSALWSPP 1207



 Score =  108 bits (271), Expect(4) = e-154
 Identities = 65/190 (34%), Positives = 92/190 (48%), Gaps = 2/190 (1%)
 Frame = +2

Query: 53  WSASFFYGSPYTPLKEASWKLLELQHTGHAHPRLIIGDLNLILHSKDKIGGDQFDYKQVD 232
           W+A   YG P T  K  +W LL       + P L  GD N I   ++K GG     + +D
Sbjct: 100 WNAMGIYGWPETSNKHLTWSLLRRLKQQCSLPVLFFGDFNEITSIEEKEGGAPRCERVMD 159

Query: 233 FAHDFIQQEGLMDLGYSGNDFTWNNEREGNANIKQRLDRGLANSDWVLLFPDNTLSHLPR 412
              + I    + DLGY GN FTW      +  I++RLDR LAN +W   FP   + HLPR
Sbjct: 160 AFREVIDDCAVKDLGYVGNRFTWQRGNSPSTLIRERLDRMLANDEWCDNFPSWEVVHLPR 219

Query: 413 IQSDHCPIVLDT--NPEAHIGPKPFHFQAMWLDHIDYPSVLLRGWSPNTSRHCLFEIPDK 586
            +SDH P++L T  N     G K F F+AMWL   +   ++   W+ +       +I ++
Sbjct: 220 YRSDHAPLLLKTGVNDSFRRGNKLFKFEAMWLSKEECGKIVEEAWNGSAGE----DITNR 275

Query: 587 LKNTKKSFLT 616
           L    +S  T
Sbjct: 276 LDEVSRSLST 285


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score =  211 bits (537), Expect(4) = e-153
 Identities = 100/265 (37%), Positives = 164/265 (61%), Gaps = 1/265 (0%)
 Frame = +3

Query: 1479 MAIKLDMSKAFDRVNWKTLLSMQKLLGFHTKWCHLVNQCISSSNFSIILNGSPEGHFHST 1658
            +AIK D+SKA+DRV W  L    + LGF   W  L+ +C+ S  + +++NG+P G    +
Sbjct: 571  IAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIMECVKSVRYQVLINGTPHGEIIPS 630

Query: 1659 RGLRQGDPLSPTLFIICMELLSRLLQEKQNQGKLQGAKISKNGPEITHLLFADDIFLFYR 1838
            RGLRQGDPLSP LF+IC E+L ++LQ  + + ++ G K+++  P I+HLLFADD  +FY 
Sbjct: 631  RGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGLKVARGAPPISHLLFADD-SMFYC 689

Query: 1839 ATITDAL-EISDTLKTFSAMTGQTINGDKSGVFFSKTLPKRHTNILRKILKVKAIGLKDM 2015
                +AL +I   ++ +S  +GQ +N  KS ++F K + +    ++++ L ++  G + +
Sbjct: 690  KVNDEALGQIIRIIEEYSLASGQRVNYLKSSIYFGKHISEERRCLVKRKLGIEREGGEGV 749

Query: 2016 YLGTPLFLGHSKTNMFEFIITRVKSRINGWKSKLLSQAGRSILIKSVTSTIPTYHMSCFI 2195
            YLG P     SK     ++  R+  ++ GW+S  LS  G+ IL+K+V   +PTY MSCF 
Sbjct: 750  YLGLPESFQGSKVATLSYLKDRLGKKVLGWQSNFLSPGGKEILLKAVAMALPTYTMSCFK 809

Query: 2196 LPKNITNRLDALQRDFWWGKKENGK 2270
            +PK I  +++++  +FWW  K+ G+
Sbjct: 810  IPKTICQQIESVMAEFWWKNKKEGR 834



 Score =  185 bits (469), Expect(4) = e-153
 Identities = 110/291 (37%), Positives = 160/291 (54%), Gaps = 1/291 (0%)
 Frame = +1

Query: 598  KKVLSDWNKESFGAVGTKFLKLVQSIESCQKLLPSNSNILQENSLKIDLALAQKNEEMFW 777
            ++ +S W + S  +   +  +L   +++  K +P +   L    LK +L+    NEE FW
Sbjct: 279  RREISKWKRVSKPSSAVRIQELQFKLDAATKQIPFDRRELAR--LKKELSQEYNNEEQFW 336

Query: 778  KQKSRDKWIPLGFERNTKKFHATTICXXXXXXINGILSSGGEWETSRKIIAKTLVDHFSF 957
            ++KSR  W+  G +RNTK FHA T        I  ++   G   TS + + +    +F  
Sbjct: 337  QEKSRIMWMRNG-DRNTKYFHAATKNRRAQNRIQKLIDEEGREWTSDEDLGRVAEAYFKK 395

Query: 958  LLA-EDMPNPLEIPSHLVEKIITPMDNSRLLTLPSLEEIRFVTFSIGALKAPGPDGFPGI 1134
            L A ED+   +E   +L   +   M+N+ L  +   EE++  TFSI   K PGPDG  G 
Sbjct: 396  LFASEDVGYTVEELENLTPLVSDQMNNNLLAPITK-EEVQRATFSINPHKCPGPDGMNGF 454

Query: 1135 FFHNAWDLIHQQVLTMVTIFFYQGHDLEHLNHTNIALIPKKNHPKNPNDFRPISLCNVAY 1314
             +   W+ +  Q+  MV  FF  G   E +N TNI LIPK    +   DFRPISLCNV Y
Sbjct: 455  LYQQFWETMGDQITEMVQAFFRSGSIEEGMNKTNICLIPKILKAEKMTDFRPISLCNVIY 514

Query: 1315 KIITKIISNRLRPLLHKIISPMQSAFVKNRLISDNIAIAHEIIHTIRSGEK 1467
            K+I K+++NRL+ +L  +IS  Q+AFVK RLISDNI IAHE++H + S  K
Sbjct: 515  KVIGKLMANRLKKILPSLISETQAAFVKGRLISDNILIAHELLHALSSNNK 565



 Score =  149 bits (375), Expect(4) = e-153
 Identities = 99/378 (26%), Positives = 170/378 (44%), Gaps = 22/378 (5%)
 Frame = +1

Query: 2278 LYLKAWKDICSPTRNGGLGFRTFENSNKAYLSKIVWRLLTKPDDLWSQILKHKYFAKIKA 2457
            L+ KAW  +  P   GGLGF+  E  N A L K +WR++T+ D L +++ K +YF+K   
Sbjct: 836  LHWKAWCHLSRPKAVGGLGFKEIEAFNIALLGKQLWRMITEKDSLMAKVFKSRYFSKSDP 895

Query: 2458 SLANTSKKNCSWFWQCCKKGIGTILNNAIWEVGSGKNINIWTEPWV-------PNGNSTL 2616
              A    +  S+ W+   +    I       +G+G+ IN+WT+PW+              
Sbjct: 896  LNAPLGSRP-SFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWIGAKPAKAAQAVKRS 954

Query: 2617 PIFGPAPPNAPQNVSDLFIPRTKIWNMSLLRKYFNHFIISKIILIFGKTNSTIDILKWGG 2796
             +      N+   V DL +P  + WN +L+   F       I+ +      T D   W  
Sbjct: 955  HLVSQYAANSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEY 1014

Query: 2797 TKNGEFSVKSQYHILMTDSISQ-------IPLELSKCFLQLWQIKGHPKSTLFAWKCLHD 2955
            +++G +SVKS Y + MT+ I+Q       +   L   F Q+W++   PK   F W+C+++
Sbjct: 1015 SRSGHYSVKSGYWV-MTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNN 1073

Query: 2956 IIPTRERLNRIFPIPDKKCIFCKSQNETLHHLLIGCPYTKAVWLSS--------TWGLNL 3111
             +     L       +K C+ C S  ET++HLL  CP+ +  W  S         W  +L
Sbjct: 1074 CLSVASNLAYRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESL 1133

Query: 3112 DQFKHLSVQQFVHIWIKPPISWEGDTTHWNQMFIFTFWCIWKERCACIFSGQKITSPNIL 3291
              F+++     VH         + + +  + +  +  W +WK R   +F G++ T+P ++
Sbjct: 1134 --FRNMHHVLSVH-------KSQPEESDHHALIPWILWRLWKNRNDLVFKGREFTAPQVI 1184

Query: 3292 SKNINLQMKLFFKMDEWD 3345
                   +K    MD W+
Sbjct: 1185 -------LKATEDMDAWN 1195



 Score = 70.9 bits (172), Expect(4) = e-153
 Identities = 41/163 (25%), Positives = 72/163 (44%)
 Frame = +2

Query: 71  YGSPYTPLKEASWKLLELQHTGHAHPRLIIGDLNLILHSKDKIGGDQFDYKQVDFAHDFI 250
           YG P    +   W+ L       + P ++ GD N ++   +KIGG              +
Sbjct: 105 YGEPVQAERGELWERLTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQML 164

Query: 251 QQEGLMDLGYSGNDFTWNNEREGNANIKQRLDRGLANSDWVLLFPDNTLSHLPRIQSDHC 430
              GL ++ +SG  F+W   R     ++ RLDR +AN  W+ LFP    ++L +I SDH 
Sbjct: 165 NSCGLWEVNHSGYQFSWYGNRNDEL-VQCRLDRTVANQAWMELFPQAKATYLQKICSDHS 223

Query: 431 PIVLDTNPEAHIGPKPFHFQAMWLDHIDYPSVLLRGWSPNTSR 559
           P++ +   +       F +   W+    +  +L   WS  +++
Sbjct: 224 PLINNLVGDNWRKWAGFKYDKRWVQREGFKDLLCNFWSQQSTK 266


>gb|AFP55574.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
          Length = 1656

 Score =  214 bits (546), Expect(4) = e-153
 Identities = 103/261 (39%), Positives = 150/261 (57%)
 Frame = +3

Query: 1470 HGLMAIKLDMSKAFDRVNWKTLLSMQKLLGFHTKWCHLVNQCISSSNFSIILNGSPEGHF 1649
            +G   +KLDM+KA+DRV W  L ++ + +GF   W  LV  C+++S+ S+++NG P   F
Sbjct: 1177 NGAFGLKLDMNKAYDRVEWNFLEAVLRKMGFVDSWIGLVMSCVTTSSLSVLINGKPGPSF 1236

Query: 1650 HSTRGLRQGDPLSPTLFIICMELLSRLLQEKQNQGKLQGAKISKNGPEITHLLFADDIFL 1829
              +RGLRQGDPLSP LF+   ++LSR++ +      L    I  N   ++HL FADD   
Sbjct: 1237 LPSRGLRQGDPLSPFLFLFVNDVLSRMINKMCQDSLLTPVTIGPNNLPVSHLFFADDSLF 1296

Query: 1830 FYRATITDALEISDTLKTFSAMTGQTINGDKSGVFFSKTLPKRHTNILRKILKVKAIGLK 2009
            F RAT+ +   +SD L T+   +GQ IN +KS +FFS   P    ++L  I+++  +   
Sbjct: 1297 FLRATLQNCETLSDLLHTYCIASGQLINVEKSSIFFSPNTPPEIAHLLSSIMQIPVVSDP 1356

Query: 2010 DMYLGTPLFLGHSKTNMFEFIITRVKSRINGWKSKLLSQAGRSILIKSVTSTIPTYHMSC 2189
              YLG P F   SK     FI   +  ++ GWK   LSQAG+ +LIK+V + IP Y M C
Sbjct: 1357 GTYLGLPTFWHRSKKKALGFIKDSILRKVKGWKQATLSQAGKEVLIKAVATAIPAYPMGC 1416

Query: 2190 FILPKNITNRLDALQRDFWWG 2252
            F  P  +   L+ +  DFWWG
Sbjct: 1417 FKFPSTLCKELNGILADFWWG 1437



 Score =  188 bits (478), Expect(4) = e-153
 Identities = 109/289 (37%), Positives = 159/289 (55%), Gaps = 4/289 (1%)
 Frame = +1

Query: 601  KVLSDWNKESFGAVGTKFLKLVQSIESCQKLLPSNSNILQENSLKIDLALAQKNEEMFWK 780
            K L  W+KE F     +   L+  IE   +  P +++  Q N L   +      +EM+W 
Sbjct: 888  KALKMWSKEKFSNPSVQVADLLSDIEKLHQSNPPDAHH-QINILTDQVTKLWTQDEMYWH 946

Query: 781  QKSRDKWIPLGFERNTKKFHATTICXXXXXXINGILSSGGEWETSRKIIAKTLVDHFSFL 960
            Q+SR  W+ LG ++N+  FH TTI       I  +    G W  S   +A   +D+F+ L
Sbjct: 947  QRSRVNWLKLG-DQNSSFFHQTTIQRRQYNKIVRLKDDHGNWLDSEADVALQFLDYFTAL 1005

Query: 961  LAEDMPNPLEIPSHLVEKIITPMDNSRLLTLPSLEEIRFVTFSIGALKAPGPDGFPGIFF 1140
               + P   E     V+  +T   N  L +  SL E++   F +GA KAPGPDGF GIF+
Sbjct: 1006 YQSNGPQQWEEVLDFVDTAVTAEMNKILSSPVSLLEVKKAVFDLGATKAPGPDGFSGIFY 1065

Query: 1141 HNAWD----LIHQQVLTMVTIFFYQGHDLEHLNHTNIALIPKKNHPKNPNDFRPISLCNV 1308
             N W+    +IH+  L   T        L+ +N T++ALIPK   P +P+ +RPI+LCN 
Sbjct: 1066 QNQWEWVQSIIHESALQHQT----SSSLLQVMNRTHLALIPKVKAPTHPSHYRPIALCNF 1121

Query: 1309 AYKIITKIISNRLRPLLHKIISPMQSAFVKNRLISDNIAIAHEIIHTIR 1455
            +YKI+TKII++RL+P + ++IS  QSAFV NR I DN+ IAHEI H ++
Sbjct: 1122 SYKILTKIIASRLQPFMSELISDNQSAFVSNRQIQDNVIIAHEIYHHLK 1170



 Score =  115 bits (289), Expect(4) = e-153
 Identities = 58/162 (35%), Positives = 87/162 (53%)
 Frame = +2

Query: 62   SFFYGSPYTPLKEASWKLLELQHTGHAHPRLIIGDLNLILHSKDKIGGDQFDYKQVDFAH 241
            ++ YG+P+   K A W+L+  +    + P L++GD N +L   +K GG      ++    
Sbjct: 708  TWMYGNPHDNEKRAFWRLMYSRFPVQSLPWLVLGDFNEVLDPSEKWGGGPPLPWRIKLFR 767

Query: 242  DFIQQEGLMDLGYSGNDFTWNNEREGNANIKQRLDRGLANSDWVLLFPDNTLSHLPRIQS 421
            DF+    L DL + G  F+W   R G   IK+RLDR L N  W    P+  + HLP+I S
Sbjct: 768  DFLNNGHLRDLHFKGPGFSWFAMRHGRVFIKERLDRALGNIAWSSSQPNTQILHLPKIGS 827

Query: 422  DHCPIVLDTNPEAHIGPKPFHFQAMWLDHIDYPSVLLRGWSP 547
            DH P++LD+NP+     + F F+ MW  H +Y  V+ R W P
Sbjct: 828  DHRPLLLDSNPKMLNKTRLFRFEQMWTTHEEYSDVIQRSWPP 869



 Score = 95.9 bits (237), Expect(4) = e-153
 Identities = 60/200 (30%), Positives = 98/200 (49%), Gaps = 8/200 (4%)
 Frame = +1

Query: 2278 LYLKAWKDICSPTRNGGLGFRTFENSNKAYLSKIVWRLLTKPDDLWSQILKHKYFAKIKA 2457
            ++ K+W  +  P ++GG+GFR  E+ N + L+K  WRL   P  LW+++L+  Y+ +  +
Sbjct: 1444 IHWKSWDFLARPKKDGGMGFRNLEDFNNSLLAKQAWRLHQNPFALWARVLEQLYYPR-SS 1502

Query: 2458 SLANTSKKNCSWFWQCCKKGIGTILNNAIWEVGSGKNINIWTEPWVPNGNSTLPIFGPAP 2637
             L      N SW W     G   I   A+W +G+G ++NI  + W+P+         P+ 
Sbjct: 1503 FLEAPKGPNPSWIWNSLLIGRNFIHKEALWNIGNGFSVNIVGDNWIPS-------IPPST 1555

Query: 2638 PNAPQN-----VSDLFIPRTKIWNMSLLRKYF---NHFIISKIILIFGKTNSTIDILKWG 2793
             + P N     V +L    TK W +    +        +IS I +    + +  D L W 
Sbjct: 1556 VSLPLNEDNSRVCELINWDTKSWELDHFAETITPTQRLLISAIPI---TSLAAPDTLIWP 1612

Query: 2794 GTKNGEFSVKSQYHILMTDS 2853
             TK+G +SVKS YH+L + S
Sbjct: 1613 YTKDGVYSVKSGYHLLHSKS 1632