BLASTX nr result
ID: Cimicifuga21_contig00019724
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00019724
(221 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002308737.1| predicted protein [Populus trichocarpa] gi|2... 120 9e-26
ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258... 116 2e-24
emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera] 116 2e-24
sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-c... 115 3e-24
ref|NP_189042.4| pentatricopeptide repeat-containing protein [Ar... 115 3e-24
>ref|XP_002308737.1| predicted protein [Populus trichocarpa] gi|222854713|gb|EEE92260.1|
predicted protein [Populus trichocarpa]
Length = 590
Score = 120 bits (302), Expect = 9e-26
Identities = 55/73 (75%), Positives = 66/73 (90%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
GSI+DAKK+FDRL K+DVVSWNS+LTGY+QHGLGK A+++FEEMLR PN+ITFLCVL
Sbjct: 268 GSIEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVL 327
Query: 40 TACSHGGLLNEGK 2
TACSH GLL+EG+
Sbjct: 328 TACSHAGLLDEGR 340
Score = 64.7 bits (156), Expect = 8e-09
Identities = 28/67 (41%), Positives = 44/67 (65%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
G + A+K+FD + +DVV+W +++TGY+QH ++A+ EMLR+G KPN+ T +L
Sbjct: 64 GDLVYARKLFDEMSSRDVVTWTALITGYSQHDRPQDALLLLPEMLRIGLKPNQFTLASLL 123
Query: 40 TACSHGG 20
A S G
Sbjct: 124 KAASGVG 130
Score = 62.8 bits (151), Expect = 3e-08
Identities = 30/71 (42%), Positives = 44/71 (61%)
Frame = -2
Query: 214 IKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVLTA 35
+++A+ IFD + K+ VSWN+++ GYA+ G G +A F MLR KP T+ VL A
Sbjct: 169 LEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCA 228
Query: 34 CSHGGLLNEGK 2
C+ G L +GK
Sbjct: 229 CASMGSLEQGK 239
>ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
Length = 1286
Score = 116 bits (291), Expect = 2e-24
Identities = 53/72 (73%), Positives = 64/72 (88%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
GSI DAK++FDRL K DVVSWN++LTG AQHGLGKE + +FE+MLR+G +PNEI+FLCVL
Sbjct: 339 GSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVL 398
Query: 40 TACSHGGLLNEG 5
TACSH GLL+EG
Sbjct: 399 TACSHSGLLDEG 410
Score = 60.1 bits (144), Expect = 2e-07
Identities = 24/62 (38%), Positives = 43/62 (69%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
G + DA+++FD + KD+V+W +++ G++Q+ ++A+ F +MLRLGF+PN T +L
Sbjct: 137 GCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLL 196
Query: 40 TA 35
A
Sbjct: 197 KA 198
Score = 57.4 bits (137), Expect = 1e-06
Identities = 27/73 (36%), Positives = 44/73 (60%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
G + A+ FD + K VSWN++++G+A+ G G+ A+ +M R F+P T+ VL
Sbjct: 238 GHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVL 297
Query: 40 TACSHGGLLNEGK 2
+AC+ G L +GK
Sbjct: 298 SACASIGALEQGK 310
>emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
Length = 724
Score = 116 bits (291), Expect = 2e-24
Identities = 53/72 (73%), Positives = 64/72 (88%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
GSI DAK++FDRL K DVVSWN++LTG AQHGLGKE + +FE+MLR+G +PNEI+FLCVL
Sbjct: 339 GSIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVL 398
Query: 40 TACSHGGLLNEG 5
TACSH GLL+EG
Sbjct: 399 TACSHSGLLDEG 410
Score = 57.8 bits (138), Expect = 9e-07
Identities = 23/62 (37%), Positives = 42/62 (67%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
G + DA+++FD + KD+V+W +++ G++Q+ ++A+ F +MLRLG +PN T +L
Sbjct: 137 GCLDDARRMFDEMPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLL 196
Query: 40 TA 35
A
Sbjct: 197 KA 198
Score = 55.8 bits (133), Expect = 4e-06
Identities = 26/73 (35%), Positives = 43/73 (58%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
G + A+ FD + K VSWN++++G+A+ G G+ A+ +M R F+P T+ V
Sbjct: 238 GHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWKMQRKNFQPTHFTYSSVF 297
Query: 40 TACSHGGLLNEGK 2
+AC+ G L +GK
Sbjct: 298 SACASIGALEQGK 310
>sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g24000, mitochondrial; Flags: Precursor
gi|9294669|dbj|BAB03018.1| unnamed protein product
[Arabidopsis thaliana]
Length = 633
Score = 115 bits (289), Expect = 3e-24
Identities = 55/72 (76%), Positives = 62/72 (86%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
GSI DA+KIFDRL K+DVVSWNS+LT YAQHG GKEAV FEEM R+G +PNEI+FL VL
Sbjct: 311 GSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVL 370
Query: 40 TACSHGGLLNEG 5
TACSH GLL+EG
Sbjct: 371 TACSHSGLLDEG 382
Score = 63.9 bits (154), Expect = 1e-08
Identities = 28/73 (38%), Positives = 48/73 (65%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
G + DA+ +FD LE ++ VSWN+++ G+A+ ++A+ F+ MLR GF+P+ ++ +
Sbjct: 210 GLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLF 269
Query: 40 TACSHGGLLNEGK 2
ACS G L +GK
Sbjct: 270 GACSSTGFLEQGK 282
Score = 63.2 bits (152), Expect = 2e-08
Identities = 24/64 (37%), Positives = 46/64 (71%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
GS+++A+K+F+++ ++D V+W ++++GY+QH +A+ F +MLR G+ PNE T V+
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168
Query: 40 TACS 29
A +
Sbjct: 169 KAAA 172
>ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332643322|gb|AEE76843.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 665
Score = 115 bits (289), Expect = 3e-24
Identities = 55/72 (76%), Positives = 62/72 (86%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
GSI DA+KIFDRL K+DVVSWNS+LT YAQHG GKEAV FEEM R+G +PNEI+FL VL
Sbjct: 311 GSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGIRPNEISFLSVL 370
Query: 40 TACSHGGLLNEG 5
TACSH GLL+EG
Sbjct: 371 TACSHSGLLDEG 382
Score = 63.9 bits (154), Expect = 1e-08
Identities = 28/73 (38%), Positives = 48/73 (65%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
G + DA+ +FD LE ++ VSWN+++ G+A+ ++A+ F+ MLR GF+P+ ++ +
Sbjct: 210 GLMDDAQLVFDALESRNDVSWNALIAGHARRSGTEKALELFQGMLRDGFRPSHFSYASLF 269
Query: 40 TACSHGGLLNEGK 2
ACS G L +GK
Sbjct: 270 GACSSTGFLEQGK 282
Score = 63.2 bits (152), Expect = 2e-08
Identities = 24/64 (37%), Positives = 46/64 (71%)
Frame = -2
Query: 220 GSIKDAKKIFDRLEKKDVVSWNSILTGYAQHGLGKEAVRQFEEMLRLGFKPNEITFLCVL 41
GS+++A+K+F+++ ++D V+W ++++GY+QH +A+ F +MLR G+ PNE T V+
Sbjct: 109 GSLEEARKVFEKMPQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVI 168
Query: 40 TACS 29
A +
Sbjct: 169 KAAA 172