BLASTX nr result

ID: Cimicifuga21_contig00019655 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019655
         (338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002880609.1| hypothetical protein ARALYDRAFT_901029 [Arab...    57   3e-08
tpg|DAA37683.1| TPA: hypothetical protein ZEAMMB73_237524 [Zea m...    61   1e-07
ref|XP_002447884.1| hypothetical protein SORBIDRAFT_06g017410 [S...    61   1e-07
gb|ACG44886.1| F-box domain containing protein [Zea mays]              61   1e-07
ref|NP_001132289.1| uncharacterized protein LOC100193729 [Zea ma...    61   1e-07

>ref|XP_002880609.1| hypothetical protein ARALYDRAFT_901029 [Arabidopsis lyrata subsp.
           lyrata] gi|297326448|gb|EFH56868.1| hypothetical protein
           ARALYDRAFT_901029 [Arabidopsis lyrata subsp. lyrata]
          Length = 464

 Score = 57.4 bits (137), Expect(2) = 3e-08
 Identities = 23/41 (56%), Positives = 31/41 (75%)
 Frame = -2

Query: 331 LLHHILSFLPTQNVVQTCVLSKRWRDIWCSIPSLDLDQRLL 209
           +L HILSF+PT+  ++  +LSKRWR +WC IPSL LD + L
Sbjct: 36  ILQHILSFIPTKLAIRASLLSKRWRHVWCDIPSLSLDDQTL 76



 Score = 25.4 bits (54), Expect(2) = 3e-08
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 92  VNAWILYALKHNVEVMDIDILN 27
           +N W+ +A+  NVE + +D  N
Sbjct: 107 INKWVEFAISRNVENLSLDFWN 128


>tpg|DAA37683.1| TPA: hypothetical protein ZEAMMB73_237524 [Zea mays]
          Length = 360

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 25/38 (65%), Positives = 31/38 (81%)
 Frame = -2

Query: 331 LLHHILSFLPTQNVVQTCVLSKRWRDIWCSIPSLDLDQ 218
           L+HHI+SFL  + VVQTCVLS RWR +W S+P LD+DQ
Sbjct: 31  LIHHIMSFLKARQVVQTCVLSTRWRHLWRSVPCLDIDQ 68


>ref|XP_002447884.1| hypothetical protein SORBIDRAFT_06g017410 [Sorghum bicolor]
           gi|241939067|gb|EES12212.1| hypothetical protein
           SORBIDRAFT_06g017410 [Sorghum bicolor]
          Length = 426

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 25/38 (65%), Positives = 31/38 (81%)
 Frame = -2

Query: 331 LLHHILSFLPTQNVVQTCVLSKRWRDIWCSIPSLDLDQ 218
           L+HHI+SFL  + VVQTCVLS RWR +W S+P LD+DQ
Sbjct: 33  LIHHIMSFLKARQVVQTCVLSTRWRHLWRSVPCLDIDQ 70


>gb|ACG44886.1| F-box domain containing protein [Zea mays]
          Length = 420

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 25/38 (65%), Positives = 31/38 (81%)
 Frame = -2

Query: 331 LLHHILSFLPTQNVVQTCVLSKRWRDIWCSIPSLDLDQ 218
           L+HHI+SFL  + VVQTCVLS RWR +W S+P LD+DQ
Sbjct: 31  LIHHIMSFLKARQVVQTCVLSTRWRHLWRSVPCLDIDQ 68


>ref|NP_001132289.1| uncharacterized protein LOC100193729 [Zea mays]
           gi|194693982|gb|ACF81075.1| unknown [Zea mays]
           gi|414587113|tpg|DAA37684.1| TPA: F-box domain
           containing protein isoform 1 [Zea mays]
           gi|414587114|tpg|DAA37685.1| TPA: F-box domain
           containing protein isoform 2 [Zea mays]
          Length = 423

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 25/38 (65%), Positives = 31/38 (81%)
 Frame = -2

Query: 331 LLHHILSFLPTQNVVQTCVLSKRWRDIWCSIPSLDLDQ 218
           L+HHI+SFL  + VVQTCVLS RWR +W S+P LD+DQ
Sbjct: 31  LIHHIMSFLKARQVVQTCVLSTRWRHLWRSVPCLDIDQ 68


Top