BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019605
         (568 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   114   1e-23
ref|XP_002333134.1| predicted protein [Populus trichocarpa] gi|2...   105   4e-21
ref|XP_002331841.1| predicted protein [Populus trichocarpa] gi|2...   103   2e-20
ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,...    89   6e-16
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,...    89   6e-16

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|302143685|emb|CBI22546.3| unnamed protein product
           [Vitis vinifera]
          Length = 518

 Score =  114 bits (285), Expect = 1e-23
 Identities = 60/125 (48%), Positives = 82/125 (65%), Gaps = 5/125 (4%)
 Frame = +3

Query: 159 MGVVTVSSSAS--QSPFGLSSRFSTKRSPIKRPVILGFKTDKTHNSPLVTTHDPNPLSTD 332
           MGVVTVSSSAS  ++PFGL+++FS  ++P++RP++L FK DK  N  LVT H+P PL  +
Sbjct: 1   MGVVTVSSSASASRTPFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIE 60

Query: 333 THGEHXXXXXXXXXXXXXXXXXXDE---ACAIDLDYSEAAAKLENIYKLSPARDISDVED 503
           T  +H                   +    C+++LDY+EAAAKLENIYKLSPA D+S+ ED
Sbjct: 61  TSKDHKKRLRRASKPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAED 120

Query: 504 TKNVV 518
            + VV
Sbjct: 121 LERVV 125


>ref|XP_002333134.1| predicted protein [Populus trichocarpa] gi|222834948|gb|EEE73397.1|
           predicted protein [Populus trichocarpa]
          Length = 512

 Score =  105 bits (263), Expect = 4e-21
 Identities = 58/121 (47%), Positives = 75/121 (61%), Gaps = 1/121 (0%)
 Frame = +3

Query: 159 MGVVTVSSSASQSPFGLSSRFSTKRSPIKRPVILGFKTDKTHNSPLVTTHDPNPLSTD-T 335
           MGVV+VSSSAS++P GLS++FST  S  KRP+I+ FK DK++N+ LV  H+  PL  + T
Sbjct: 1   MGVVSVSSSASRTPLGLSTKFSTYGSTAKRPLIVAFKADKSNNTSLVAPHEQIPLPVETT 60

Query: 336 HGEHXXXXXXXXXXXXXXXXXXDEACAIDLDYSEAAAKLENIYKLSPARDISDVEDTKNV 515
            G+                      C + +DY+EAAAKLENIYKLSP  D SDVED   V
Sbjct: 61  KGKKRLGKSKKSSNRLKAVRTEVSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDASGV 120

Query: 516 V 518
           +
Sbjct: 121 I 121


>ref|XP_002331841.1| predicted protein [Populus trichocarpa] gi|222875079|gb|EEF12210.1|
           predicted protein [Populus trichocarpa]
          Length = 512

 Score =  103 bits (257), Expect = 2e-20
 Identities = 56/121 (46%), Positives = 73/121 (60%), Gaps = 1/121 (0%)
 Frame = +3

Query: 159 MGVVTVSSSASQSPFGLSSRFSTKRSPIKRPVILGFKTDKTHNSPLVTTHDPNPLSTDTH 338
           MG+V+VSSSAS +P G S++FST RS  KRP+I+ FK DK++ + LV  H+  PL  +T 
Sbjct: 1   MGIVSVSSSASWTPLGFSTKFSTCRSTAKRPLIVAFKADKSNETALVAPHEQIPLPIETT 60

Query: 339 GEHXXXXXXXXXXXXXXXXXXD-EACAIDLDYSEAAAKLENIYKLSPARDISDVEDTKNV 515
            E                   +   C + +DY+EAAAKLENIYKLSP  D SDVED   V
Sbjct: 61  KEKKRRGKSKKSSDRLKAVRTEVSPCTLGVDYNEAAAKLENIYKLSPGTDTSDVEDVNGV 120

Query: 516 V 518
           +
Sbjct: 121 I 121


>ref|XP_004166500.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 515

 Score = 88.6 bits (218), Expect = 6e-16
 Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
 Frame = +3

Query: 159 MGVVTVSSSASQSPFGLSSRFSTKRSPIKRPVILGFKTDKTHNSPLVTTHDPNPLSTDTH 338
           MGVVTVSS+A+++PF L  +FS   S +KRP I+ FK DK  N+ LV+ H+   L  +++
Sbjct: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 339 GEH-XXXXXXXXXXXXXXXXXXDEA--CAIDLDYSEAAAKLENIYKLSPARDISDVE 500
                                 DEA  C++DLDY+EAAAKLENI+KLSP  + SD E
Sbjct: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKE 117


>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 514

 Score = 88.6 bits (218), Expect = 6e-16
 Identities = 52/117 (44%), Positives = 70/117 (59%), Gaps = 3/117 (2%)
 Frame = +3

Query: 159 MGVVTVSSSASQSPFGLSSRFSTKRSPIKRPVILGFKTDKTHNSPLVTTHDPNPLSTDTH 338
           MGVVTVSS+A+++PF L  +FS   S +KRP I+ FK DK  N+ LV+ H+   L  +++
Sbjct: 1   MGVVTVSSAAARTPFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESN 60

Query: 339 GEH-XXXXXXXXXXXXXXXXXXDEA--CAIDLDYSEAAAKLENIYKLSPARDISDVE 500
                                 DEA  C++DLDY+EAAAKLENI+KLSP  + SD E
Sbjct: 61  NRRKKRSGNTSKPLKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPMTEDSDKE 117