BLASTX nr result

ID: Cimicifuga21_contig00019538 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019538
         (401 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tpg|DAA59088.1| TPA: hypothetical protein ZEAMMB73_992969, parti...    57   2e-06
tpg|DAA59087.1| TPA: hypothetical protein ZEAMMB73_742545 [Zea m...    57   2e-06
dbj|BAM11098.1| ABC protein [Coptis japonica]                          57   2e-06
ref|XP_002872874.1| P-glycoprotein 5 [Arabidopsis lyrata subsp. ...    57   2e-06
ref|XP_002515184.1| multidrug resistance protein 1, 2, putative ...    57   2e-06

>tpg|DAA59088.1| TPA: hypothetical protein ZEAMMB73_992969, partial [Zea mays]
          Length = 166

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/45 (55%), Positives = 34/45 (75%)
 Frame = +2

Query: 266 IPLYRLFSFPDSTDIFLMITGAIAALANGFSVPLMAYLSG*LVDA 400
           +PLYRLF+F D TD  LM  GA+AA+ANG + PLM ++ G ++DA
Sbjct: 44  VPLYRLFAFADRTDAVLMAVGAVAAVANGMAQPLMTFIFGDVIDA 88


>tpg|DAA59087.1| TPA: hypothetical protein ZEAMMB73_742545 [Zea mays]
          Length = 1293

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/45 (55%), Positives = 34/45 (75%)
 Frame = +2

Query: 266 IPLYRLFSFPDSTDIFLMITGAIAALANGFSVPLMAYLSG*LVDA 400
           +PLYRLF+F D TD  LM  GA+AA+ANG + PLM ++ G ++DA
Sbjct: 44  VPLYRLFAFADRTDAVLMAVGAVAAVANGMAQPLMTFIFGDVIDA 88


>dbj|BAM11098.1| ABC protein [Coptis japonica]
          Length = 1292

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 1/98 (1%)
 Frame = +2

Query: 110 RNKHEHKSCSL-HKATPMNSSSEKETVFDKHDEEPHSGDXXXXXXXXXXXXXXIPLYRLF 286
           +N H   + S  H    + + +   T  D+ D +   G               +P Y+LF
Sbjct: 11  QNNHLQATASTSHSPAKLTNKTSGSTKSDQQDSDKGEG-------VEKMSAETVPYYKLF 63

Query: 287 SFPDSTDIFLMITGAIAALANGFSVPLMAYLSG*LVDA 400
           SF DS D+ LM+ G IA++ANG S+P+M +L G L++A
Sbjct: 64  SFADSKDLVLMVIGTIASVANGASMPIMTFLVGDLINA 101


>ref|XP_002872874.1| P-glycoprotein 5 [Arabidopsis lyrata subsp. lyrata]
           gi|297318711|gb|EFH49133.1| P-glycoprotein 5
           [Arabidopsis lyrata subsp. lyrata]
          Length = 1230

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/45 (57%), Positives = 32/45 (71%)
 Frame = +2

Query: 266 IPLYRLFSFPDSTDIFLMITGAIAALANGFSVPLMAYLSG*LVDA 400
           +P Y+LFSF DSTD+ LMI G+I A+ NG   PLM  L G L+DA
Sbjct: 13  VPFYKLFSFSDSTDVLLMIVGSIGAIVNGVCSPLMTLLFGDLIDA 57


>ref|XP_002515184.1| multidrug resistance protein 1, 2, putative [Ricinus communis]
           gi|223545664|gb|EEF47168.1| multidrug resistance protein
           1, 2, putative [Ricinus communis]
          Length = 1301

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 31/81 (38%), Positives = 42/81 (51%)
 Frame = +2

Query: 158 MNSSSEKETVFDKHDEEPHSGDXXXXXXXXXXXXXXIPLYRLFSFPDSTDIFLMITGAIA 337
           M  ++   T   K DEE                   +P  +LFSF DSTDI LMI G+I 
Sbjct: 12  MYEANTSITQEQKTDEEATDSGLNEGKQDEKEKVKTVPFLKLFSFADSTDILLMIAGSIG 71

Query: 338 ALANGFSVPLMAYLSG*LVDA 400
           A+ NG S+PLM+ L G ++D+
Sbjct: 72  AVGNGISMPLMSLLMGQMIDS 92


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