BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019497
         (712 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringsp...   183   3e-44
ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot viru...   134   2e-30

>gb|AAW63130.1| 31 kDa putative protein [Strawberry latent ringspot virus satellite
           RNA]
          Length = 287

 Score =  183 bits (464), Expect = 3e-44
 Identities = 105/207 (50%), Positives = 132/207 (63%), Gaps = 10/207 (4%)
 Frame = -2

Query: 711 VKVENRFSPLCVEESLVAPKS-----KITYADVVRAK--VSPAKAKKGVVTLIETSRDFK 553
           VK  NRF+PL V+E + A  +     K +YAD +R+   V P+  +KGVVTL+ET +DF 
Sbjct: 83  VKTSNRFAPLSVKEGVTAAVAAPINPKKSYADALRSSAFVKPS-VRKGVVTLVETEKDFA 141

Query: 552 LFED---LPEPVAIPGQTPQEAASLSREFAKRALVFSGRRLMPVGLPEDHSTDPFASPLP 382
           LF D     + V  PGQT  EA +L REF KR L FSGRRL   GLP    +DPFASP P
Sbjct: 142 LFGDEFTQNQVVPCPGQTLPEAEALQREFHKRTLAFSGRRLSVSGLPS--GSDPFASPSP 199

Query: 381 RGPVPARRVVHVEPFTWDNMSYGQCSRTLALYKQLTSCFGSKMFQATLYKEAVKKVCKLT 202
             P    +V HV+P +W+ MS+GQCSR L LYKQL SCFG KMF ++LY  AV+KV +L 
Sbjct: 200 VRPALTPKVAHVDPVSWEGMSFGQCSRALTLYKQLCSCFGVKMFSSSLYGMAVRKVLRLR 259

Query: 201 DAVPVSIPEFMGRLGQVDFGAAPARVY 121
           +  PV+IPE   RLGQVD  A    ++
Sbjct: 260 EDFPVAIPENFARLGQVDRDARAVHLF 286


>ref|NP_620833.1| 36 kDa protein [Strawberry latent ringspot virus satellite RNA]
           gi|478364|pir||JQ2018 hypothetical 36.5K protein -
           strawberry latent ringspot virus
           gi|312511|emb|CAA49480.1| 36 kDa protein [Strawberry
           latent ringspot virus satellite RNA]
          Length = 331

 Score =  134 bits (338), Expect(2) = 2e-30
 Identities = 87/180 (48%), Positives = 108/180 (60%), Gaps = 11/180 (6%)
 Frame = -2

Query: 711 VKVENRFSPLCVEESL---VAP--KSKITYADVVRAK--VSPAKAKKGVVTLIETSRDFK 553
           VK  NRF+ L V+E     VAP    K +YAD +R+   V P+ A+KGVVTL+ET +DF 
Sbjct: 83  VKTSNRFASLSVKEEAPEAVAPFNPKKKSYADALRSSAFVKPS-ARKGVVTLVETEKDFA 141

Query: 552 LFED---LPEPVAIPGQTPQEAASLSREFAKRALVFSGRRLMPVGLPEDHSTDPFASPLP 382
           LF D     + V  PGQT  EA SL REF KRA  FSG+RL   GLPE     P  S L 
Sbjct: 142 LFCDEFTQNQVVPCPGQTLSEAESLQREFHKRAFAFSGKRLSVSGLPEG----PIPSLLL 197

Query: 381 R-GPVPARRVVHVEPFTWDNMSYGQCSRTLALYKQLTSCFGSKMFQATLYKEAVKKVCKL 205
           R       +  HV+P +W+ MS+GQCSR L LY+QL  CFG KMF ++LY  AV++   L
Sbjct: 198 RQSACNCPKGCHVDPVSWEGMSFGQCSRALTLYRQLCGCFGMKMFSSSLYGMAVRRFSAL 257



 Score = 24.3 bits (51), Expect(2) = 2e-30
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -3

Query: 125 SIYSFCYCSGWVCAFL-GTWALFKESEVV 42
           S+YS+   S +V     GTWA FK+S ++
Sbjct: 284 SLYSYTSSSRFVPMIRSGTWAFFKDSLII 312