BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019490
         (2179 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG51420.1|AC009465_20 unknown protein; 78996-83414 [Arabidop...   107   2e-25
ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata...   107   1e-24
ref|XP_003626418.1| Pseudouridylate synthase-like protein [Medic...   102   6e-24
ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ric...   100   1e-22
ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synt...   100   2e-22

>gb|AAG51420.1|AC009465_20 unknown protein; 78996-83414 [Arabidopsis thaliana]
          Length = 699

 Score =  107 bits (268), Expect(2) = 2e-25
 Identities = 55/151 (36%), Positives = 93/151 (61%), Gaps = 10/151 (6%)
 Frame = +1

Query: 655  DKDKRTAIHKFIKDNFPFIASET----DSDTLQVVLRLKNVNERNRRKRTAETEVRNVQ- 819
            DK KRTAIH F+K+NF F+ ++T    DS +  + +R+ +    NR  R+ + + R  + 
Sbjct: 153  DKSKRTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGANNNRGNRSKKRKERGDKP 212

Query: 820  -----EDNWPLGLGKYLRLSMCKCDMETEAAITAIGNHLGVRKQNFGWAGEKEKSSISTQ 984
                  ++WP  +GK+LR  + K + +T+ A+  IG  LGV+ ++FG++G K+K S+STQ
Sbjct: 213  FDSRGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQ 272

Query: 985  RITIFRKPADSVVTVNNNFSNIKVGNFSKLK 1077
            R+T+F++ A  +  +N     IKVG+F  +K
Sbjct: 273  RVTVFKQQASKLAALNKRLFGIKVGDFCNVK 303



 Score = 36.6 bits (83), Expect(2) = 2e-25
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
 Frame = +3

Query: 1056 GKFLKTKKG----DLKGNCFTMILREITSD-RAYISAAIDSWKKNGFINYFPVSF 1205
            G F   K+G     L GN FT+ LR + +D    I  + +S  K+GFINYF + F
Sbjct: 297  GDFCNVKEGLLLGQLMGNRFTITLRGVVADSEETIKQSAESLGKDGFINYFGLQF 351


>ref|XP_002884472.1| pseudouridylate synthase [Arabidopsis lyrata subsp. lyrata]
            gi|297330312|gb|EFH60731.1| pseudouridylate synthase
            [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  107 bits (267), Expect(2) = 1e-24
 Identities = 55/151 (36%), Positives = 93/151 (61%), Gaps = 10/151 (6%)
 Frame = +1

Query: 655  DKDKRTAIHKFIKDNFPFIASET----DSDTLQVVLRLKNVNERNRRKRTAETEVRNVQ- 819
            DK KRTAIH F+K+NF F+ ++T    DS +  + +R+ +    NR  R+ + + R  + 
Sbjct: 154  DKSKRTAIHNFVKENFKFLVTDTVDGPDSTSKCIRVRVNSGAHNNRGNRSKKRKERGDKP 213

Query: 820  -----EDNWPLGLGKYLRLSMCKCDMETEAAITAIGNHLGVRKQNFGWAGEKEKSSISTQ 984
                  ++WP  +GK+LR  + K + +T+ A+  IG  LGV+ ++FG++G K+K S+STQ
Sbjct: 214  FDSRGSEHWPEHVGKFLRFHLYKENKDTQEALGLIGKMLGVQPKSFGFSGTKDKRSVSTQ 273

Query: 985  RITIFRKPADSVVTVNNNFSNIKVGNFSKLK 1077
            R+T+F++ A  +  +N     IKVG+F  +K
Sbjct: 274  RVTVFKQQASKLAALNKRLFGIKVGDFCHVK 304



 Score = 34.3 bits (77), Expect(2) = 1e-24
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 1080 GDLKGNCFTMILREITSD-RAYISAAIDSWKKNGFINYF 1193
            G L GN FT+ LR + +D    I  + +S  K+GFINYF
Sbjct: 310  GQLMGNRFTITLRGVVADSEETIKKSAESLGKDGFINYF 348


>ref|XP_003626418.1| Pseudouridylate synthase-like protein [Medicago truncatula]
            gi|355501433|gb|AES82636.1| Pseudouridylate synthase-like
            protein [Medicago truncatula]
          Length = 669

 Score =  102 bits (254), Expect(2) = 6e-24
 Identities = 49/147 (33%), Positives = 89/147 (60%), Gaps = 10/147 (6%)
 Frame = +1

Query: 655  DKDKRTAIHKFIKDNFPFIASET----DSDTLQVVLRLKNVNERNRRKRTAETEVRNVQ- 819
            DK  RTA+H F ++NF F+ ++T    D+    + +RL +    N  K + + + R+ + 
Sbjct: 126  DKSHRTAVHVFFRENFKFLVTDTVDGPDASIKCIRVRLNSGGSNNNGKNSRKRKERDTKP 185

Query: 820  -----EDNWPLGLGKYLRLSMCKCDMETEAAITAIGNHLGVRKQNFGWAGEKEKSSISTQ 984
                  +NWP   GK+LR  + K + +T+ A+  +G+ LGV+ ++FG+AG K+K +++TQ
Sbjct: 186  FDSRGSENWPENAGKFLRFHLYKENKDTQEALGVLGHMLGVKSKSFGFAGTKDKRAVTTQ 245

Query: 985  RITIFRKPADSVVTVNNNFSNIKVGNF 1065
            R+T+++K A  + ++N     IKVG+F
Sbjct: 246  RVTVYKKQASKLASLNEKLFGIKVGDF 272



 Score = 37.0 bits (84), Expect(2) = 6e-24
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 1080 GDLKGNCFTMILREITSDRA-YISAAIDSWKKNGFINYF 1193
            G L GN FT+ LR + +D    I AA DS  ++GFINYF
Sbjct: 282  GQLFGNRFTITLRGVVADSVDTIKAAADSLGRHGFINYF 320


>ref|XP_002512230.1| tRNA pseudouridine synthase d, putative [Ricinus communis]
            gi|223548191|gb|EEF49682.1| tRNA pseudouridine synthase
            d, putative [Ricinus communis]
          Length = 753

 Score =  100 bits (249), Expect(2) = 1e-22
 Identities = 56/148 (37%), Positives = 88/148 (59%), Gaps = 11/148 (7%)
 Frame = +1

Query: 655  DKDKRTAIHKFIKDNFPFIASET----DSDTLQVVLRLK---NVNERNR----RKRTAET 801
            DK  RTA H F K+   F+ ++T    D+ +  + +RL    N+NE NR    RK   + 
Sbjct: 167  DKAHRTATHNFFKEKLKFLVTDTVDGPDASSKCIRVRLNSRGNINEGNRNSKKRKDRNDK 226

Query: 802  EVRNVQEDNWPLGLGKYLRLSMCKCDMETEAAITAIGNHLGVRKQNFGWAGEKEKSSIST 981
               +   D+WP  LGK+LR  + K + +T+ AI  IG  LG++ ++FG+AG K+K S+ST
Sbjct: 227  PFDSRGSDHWPEHLGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVST 286

Query: 982  QRITIFRKPADSVVTVNNNFSNIKVGNF 1065
            QR+T+F++ A  +  +N+    IKVG+F
Sbjct: 287  QRVTVFKQHASRLAALNDRLIGIKVGDF 314



 Score = 34.3 bits (77), Expect(2) = 1e-22
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 1080 GDLKGNCFTMILREITSDRA-YISAAIDSWKKNGFINYF 1193
            G L GN FT+ LR + +D    I  + DS  ++GFINYF
Sbjct: 324  GQLLGNRFTVTLRGVVADSEDTIKGSADSLGRHGFINYF 362


>ref|XP_002272750.1| PREDICTED: multisubstrate pseudouridine synthase 7-like [Vitis
            vinifera]
          Length = 694

 Score =  100 bits (249), Expect(2) = 2e-22
 Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 10/151 (6%)
 Frame = +1

Query: 655  DKDKRTAIHKFIKDNFPFIASET--DSDTLQVVLRLK------NVNERNRRKRTAETE-- 804
            DK  RTA+H F K+N  F+ ++T    DT    +R++      + N RN RKR    +  
Sbjct: 115  DKSHRTAVHNFFKENLKFLVTDTIDGPDTSSKCIRVRLNSGGSHNNGRNSRKRKDRRDKP 174

Query: 805  VRNVQEDNWPLGLGKYLRLSMCKCDMETEAAITAIGNHLGVRKQNFGWAGEKEKSSISTQ 984
              +   DNW   +GK+LR  + K + +T+ AI  IG  LG++ ++FG+AG K+K S+STQ
Sbjct: 175  FDSRGSDNWSEHVGKFLRFHLYKENKDTQEAIGLIGKMLGIQPRSFGFAGTKDKRSVSTQ 234

Query: 985  RITIFRKPADSVVTVNNNFSNIKVGNFSKLK 1077
            R+T+F++ A+ +  +N     IKVG+F  ++
Sbjct: 235  RVTVFKQHANRLAALNERLIGIKVGDFCHVR 265



 Score = 33.5 bits (75), Expect(2) = 2e-22
 Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 1080 GDLKGNCFTMILREITSD-RAYISAAIDSWKKNGFINYF 1193
            G L GN FT+ LR + +D    I A+ D+  + GFINYF
Sbjct: 271  GQLLGNRFTITLRGVVADSEETIKASADALGRLGFINYF 309