BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019414
         (1191 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003538958.1| PREDICTED: LOW QUALITY PROTEIN: TIMELESS-int...   230   6e-58
ref|XP_002272919.1| PREDICTED: TIMELESS-interacting protein [Vit...   229   8e-58
ref|XP_003607257.1| TIMELESS-interacting protein [Medicago trunc...   228   2e-57
ref|XP_002518811.1| nucleic acid binding protein, putative [Rici...   226   9e-57
ref|XP_002315820.1| predicted protein [Populus trichocarpa] gi|2...   222   1e-55

>ref|XP_003538958.1| PREDICTED: LOW QUALITY PROTEIN: TIMELESS-interacting protein-like
           [Glycine max]
          Length = 309

 Score =  230 bits (586), Expect = 6e-58
 Identities = 131/284 (46%), Positives = 168/284 (59%), Gaps = 5/284 (1%)
 Frame = +1

Query: 91  DGGAAASATGCYKCGRPGHWSRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSTNFPSX 270
           +G  A +ATGCYKCG+PGHWSRDC                             S++F S 
Sbjct: 13  EGTGAGTATGCYKCGKPGHWSRDCPFSAPNPNPNSNTATTPNPNTPNP----SSSSFKSR 68

Query: 271 XXXXXXXXXXXXXXXXXXXXXXELLLSEDGLGYVLRHFPKSFKFRGRGHEVSDLGNLIEL 450
                                 ELLLS+DGLGYVLR+FP+ FK+RGRGHEV DLGNL+ L
Sbjct: 69  SATEKPKKLPRTKPKLTP----ELLLSDDGLGYVLRYFPREFKYRGRGHEVRDLGNLLRL 124

Query: 451 YMQWHSRLIPYYSFEQFVQKVEQVGATRRVRTCLRDLRDKVANGGDPSKLHEPPVEHEVT 630
           Y +WHSRL+PYYSF QFV KVE+V ATRRV+TCLR+LR++VA+GGDP+KL EPPV H   
Sbjct: 125 YTEWHSRLLPYYSFNQFVHKVEKVAATRRVKTCLRELRERVASGGDPTKLREPPVVH--- 181

Query: 631 DLEPEARNKDVNLDKGNPPMEIHDADADV-----LEEEMLDDIYINATEEPFQSKENQTT 795
           D+  +     V+ + G    +  D  A+      ++E+ML+DIY  ATEEP QS  N   
Sbjct: 182 DIPSDEHGFSVSAEDGGATHQEADLFAEFENVNDIQEDMLNDIYDKATEEPSQSMHN-VI 240

Query: 796 GVQVLPDQSIVKEVPDNGANILSEVQITDEQKARMEANRLKAME 927
           G  +L  Q + +       N   + +IT+EQ+ARMEANRLKA+E
Sbjct: 241 GTSML--QKVTQ------LNQSGKAEITEEQRARMEANRLKALE 276


>ref|XP_002272919.1| PREDICTED: TIMELESS-interacting protein [Vitis vinifera]
           gi|297738277|emb|CBI27478.3| unnamed protein product
           [Vitis vinifera]
          Length = 291

 Score =  229 bits (585), Expect = 8e-58
 Identities = 135/295 (45%), Positives = 167/295 (56%), Gaps = 13/295 (4%)
 Frame = +1

Query: 82  MEKDGGAAASATGCYKCGRPGHWSRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSTNF 261
           MEK G   A+ TGCYKCGRPGHWSRDC                             S   
Sbjct: 1   MEKSG---AAPTGCYKCGRPGHWSRDCPSSNTNPNPNPNPNPNSQNQYSSFNKGTASKPL 57

Query: 262 PSXXXXXXXXXXXXXXXXXXXXXXXELLLSEDGLGYVLRHFPKSFKFRGRGHEVSDLGNL 441
                                    ELLLS++GLGYVLRHFP +FKFRGRGHEVSDLGNL
Sbjct: 58  AKSSEKPKKAPRTRPNLTP------ELLLSDNGLGYVLRHFPGAFKFRGRGHEVSDLGNL 111

Query: 442 IELYMQWHSRLIPYYSFEQFVQKVEQVGATRRVRTCLRDLRDKVANGGDPSKLHEPPVEH 621
           I LY +WHS L+PYYSF+QFV KVE+VG T+RV+ C+R+LR++V NGGD +K HEPPVEH
Sbjct: 112 IGLYSEWHSHLLPYYSFDQFVHKVEKVGTTKRVKICIRELRERVENGGDLTKFHEPPVEH 171

Query: 622 EVTDLEPEARNKDVNLDKGNPPMEIHD---------ADADVLEEEMLDDIYINATEEPFQ 774
           E      +  N D  L      M   D          + + ++E+ML ++Y +ATEEP Q
Sbjct: 172 E------DCPNHDQGLPATEEVMNSVDPSHYQGDTSLNHEDVQEDMLHEVYRSATEEPSQ 225

Query: 775 SKENQTTGVQVLPDQSIVKE----VPDNGANILSEVQITDEQKARMEANRLKAME 927
           +  +      V  + S  KE    VP+NG  I S++QIT+EQKARMEANR KA+E
Sbjct: 226 TLASDMVAGDVPSEGSSKKELPNQVPENGP-IRSDIQITEEQKARMEANRQKALE 279


>ref|XP_003607257.1| TIMELESS-interacting protein [Medicago truncatula]
           gi|355508312|gb|AES89454.1| TIMELESS-interacting protein
           [Medicago truncatula]
          Length = 286

 Score =  228 bits (582), Expect = 2e-57
 Identities = 129/279 (46%), Positives = 162/279 (58%), Gaps = 4/279 (1%)
 Frame = +1

Query: 103 AASATGCYKCGRPGHWSRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSTNFPSXXXXX 282
           + +ATGCYKCGRPGHWSRDC                             ST  PS     
Sbjct: 4   SGTATGCYKCGRPGHWSRDCPFTSPASNSNLNPNPNATTSTADPPPP-TSTFKPSGPRSA 62

Query: 283 XXXXXXXXXXXXXXXXXXELLLSEDGLGYVLRHFPKSFKFRGRGHEVSDLGNLIELYMQW 462
                             ELLLS+DGLGYVLR+FP++FK+ GRGHEV DLG L+ LY  W
Sbjct: 63  VEKPKKPPRTRPKLTP--ELLLSDDGLGYVLRYFPRNFKYHGRGHEVRDLGKLLHLYSDW 120

Query: 463 HSRLIPYYSFEQFVQKVEQVGATRRVRTCLRDLRDKVANGGDPSKLHEPPVEHEVTDLEP 642
           HSRL+PYYSF QFV KVE+V ATRRV+T LR+LR++VANGGDPSKL EPPV  +V    P
Sbjct: 121 HSRLLPYYSFNQFVNKVEKVAATRRVKTSLRELRERVANGGDPSKLREPPVVDDV----P 176

Query: 643 EARNKDVNLDKGNPPMEIHDADADVLEEEMLDDIYINATEEPFQSKENQTTGVQVLPDQS 822
           +   ++      +  M       + ++E++ +DIY  ATEEP Q  +N    V   P  S
Sbjct: 177 DGEQENGEASHQDNEMFAEPETVNNIQEDLFNDIYDKATEEPSQPVQN-VISVSTDPKSS 235

Query: 823 IVK----EVPDNGANILSEVQITDEQKARMEANRLKAME 927
             +    EVP+NG ++ S  +IT EQ+ARMEANRLKA+E
Sbjct: 236 TTEKTSNEVPNNGTSLSSSAEITAEQRARMEANRLKALE 274


>ref|XP_002518811.1| nucleic acid binding protein, putative [Ricinus communis]
           gi|223542192|gb|EEF43736.1| nucleic acid binding
           protein, putative [Ricinus communis]
          Length = 267

 Score =  226 bits (576), Expect = 9e-57
 Identities = 126/275 (45%), Positives = 162/275 (58%), Gaps = 1/275 (0%)
 Frame = +1

Query: 106 ASATGCYKCGRPGHWSRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSTNFPSXXXXXX 285
           A+ TGCYKCGRPGHWSRDC                              T+FP+      
Sbjct: 6   AAPTGCYKCGRPGHWSRDCPDSNSNPNPSSSNPSNSKFP----------TSFPNTSTNSK 55

Query: 286 XXXXXXXXXXXXXXXXX-ELLLSEDGLGYVLRHFPKSFKFRGRGHEVSDLGNLIELYMQW 462
                             ++LL +DGLGYVLRHFP++FK+RGRGHEVSDLGNLI LY +W
Sbjct: 56  PVAEKPKKVPRSRPKLTPDILLGDDGLGYVLRHFPRNFKYRGRGHEVSDLGNLIRLYSEW 115

Query: 463 HSRLIPYYSFEQFVQKVEQVGATRRVRTCLRDLRDKVANGGDPSKLHEPPVEHEVTDLEP 642
           HSRL+PYYS+++FV KVEQV +T+RVR CLRDLR++VA+GGDP KLHE P E+    LE 
Sbjct: 116 HSRLLPYYSYDEFVHKVEQVASTKRVRVCLRDLRERVASGGDPMKLHESPPEYVDPKLEQ 175

Query: 643 EARNKDVNLDKGNPPMEIHDADADVLEEEMLDDIYINATEEPFQSKENQTTGVQVLPDQS 822
           +      N D G P    HDAD +  +E+ML DI+  ATE P  +  ++       P  +
Sbjct: 176 DHSIPTEN-DMGGPSSTNHDADVE--QEDMLCDIFDRATEAPTPASYSRMEA----PTSN 228

Query: 823 IVKEVPDNGANILSEVQITDEQKARMEANRLKAME 927
                 +N  ++ +E  +TDEQ+ARMEANRLKA+E
Sbjct: 229 ------NNNTSLSNESLLTDEQRARMEANRLKALE 257


>ref|XP_002315820.1| predicted protein [Populus trichocarpa] gi|222864860|gb|EEF01991.1|
           predicted protein [Populus trichocarpa]
          Length = 283

 Score =  222 bits (566), Expect = 1e-55
 Identities = 126/282 (44%), Positives = 165/282 (58%), Gaps = 8/282 (2%)
 Frame = +1

Query: 106 ASATGCYKCGRPGHWSRDCXXXXXXXXXXXXXXXXXXXXXXXXXXXFKSTNFP-SXXXXX 282
           A+ TGCYKCGRPGHWSRDC                             S  F  S     
Sbjct: 6   AAPTGCYKCGRPGHWSRDCPDSNPNPNPSSNPNSPRSFPSNNNSSSNNSNYFSGSNSKPA 65

Query: 283 XXXXXXXXXXXXXXXXXXELLLSED-GLGYVLRHFPKSFKFRGRGHEVSDLGNLIELYMQ 459
                             ELLL ED GLG++LRHFP++FK+RGRGHEVSDLGNLI LY +
Sbjct: 66  KAAEKPKKVPRSRPKLTPELLLGEDNGLGFILRHFPRNFKYRGRGHEVSDLGNLIGLYSE 125

Query: 460 WHSRLIPYYSFEQFVQKVEQVGATRRVRTCLRDLRDKVANGGDPSKLHEPPVEHEVTDLE 639
           WHS L+PYYSF+QFV KVEQV AT+R + C+R+LR++VA+GGDP+KL E   EH   ++E
Sbjct: 126 WHSHLLPYYSFDQFVHKVEQVAATKRAKMCVRELRERVASGGDPTKLRESLTEHVSANVE 185

Query: 640 ------PEARNKDVNLDKGNPPMEIHDADADVLEEEMLDDIYINATEEPFQSKENQTTGV 801
                  E  N +V  ++ +P  +  + D D L E+ML ++Y  ATEEP Q+ + +    
Sbjct: 186 HDLSTPDEGLNSEVTHNEEDPLSK--NQDVDGLPEDMLHEVYDRATEEPTQTLDRR---- 239

Query: 802 QVLPDQSIVKEVPDNGANILSEVQITDEQKARMEANRLKAME 927
               D  +  E+  NGA+  +EV I++EQKARMEANRL+A+E
Sbjct: 240 ----DMELPNEI--NGASCSNEVSISEEQKARMEANRLRALE 275