BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019384
         (1186 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein o...   520   e-145
ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [P...   511   e-142
ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein o...   503   e-140
ref|XP_002510744.1| chlorophyll A/B binding protein, putative [R...   502   e-140
ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein o...   501   e-139

>ref|XP_002276647.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
            chloroplastic [Vitis vinifera]
            gi|297745621|emb|CBI40786.3| unnamed protein product
            [Vitis vinifera]
          Length = 331

 Score =  520 bits (1340), Expect = e-145
 Identities = 246/305 (80%), Positives = 272/305 (89%)
 Frame = -3

Query: 1103 CFNSKTQRNRSLNHTLKSSSYSSCRASWQELAGVLIFSAIPFTAVKAIANSSIGVGLQRR 924
            C      ++R++N T   S+YS C+ASWQELAGVLIFSAIPFTAVKAIANS +G  LQ R
Sbjct: 25   CSKISWPKSRNVNST---STYSGCKASWQELAGVLIFSAIPFTAVKAIANSPLGESLQSR 81

Query: 923  MIETKAAAVENSSKFKASVEKARKESFWYGEKRPRWLGPIPYEYPAHLTGELPGDYGFDV 744
            M E K AAV+NSSKFKA  EKA+ ES WYGE+RPRWLGPIPY+YPA+LTGELPGDYGFD+
Sbjct: 82   MEENKKAAVKNSSKFKALAEKAKNESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDI 141

Query: 743  AGLSKDPVAFQKYFNFEILHARWAMLAALGALVPELLDLSGVIHFIEPVWWRVGYAKLKG 564
            AGL KDPVAFQKYFNFEILHARWAMLAALGAL+PELLDL G  HF+EPVWWRVGY+KLKG
Sbjct: 142  AGLGKDPVAFQKYFNFEILHARWAMLAALGALLPELLDLLGAFHFVEPVWWRVGYSKLKG 201

Query: 563  DTLDYLGVPGLHIAGSQGVLVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGG 384
            DTLDYLG+PG H AGSQGV+VIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGG
Sbjct: 202  DTLDYLGIPGFHFAGSQGVIVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGG 261

Query: 383  ILFDPLGLSKDPIAFEELKVKEMKNGRLAMVAWLGFYLQAALTGKGPIQNLLEHISDPLH 204
             LFDPL LSKDP+AFEELKVKE+KNGRLAMVAWLGFY+QAA TGKGP+QNLL+H++DP H
Sbjct: 262  ALFDPLNLSKDPVAFEELKVKEIKNGRLAMVAWLGFYIQAAATGKGPVQNLLDHLADPFH 321

Query: 203  KNILS 189
             N+LS
Sbjct: 322  NNLLS 326


>ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
            gi|222856453|gb|EEE94000.1| light-harvesting complex II
            protein Lhcb7 [Populus trichocarpa]
          Length = 338

 Score =  511 bits (1315), Expect = e-142
 Identities = 242/304 (79%), Positives = 274/304 (90%)
 Frame = -3

Query: 1094 SKTQRNRSLNHTLKSSSYSSCRASWQELAGVLIFSAIPFTAVKAIANSSIGVGLQRRMIE 915
            SK++ N S + +L +S    C+ASWQELAGV+IFSAIPFTAVKAIANS +G  LQRR+ E
Sbjct: 35   SKSRSNSSNSTSLPASI---CKASWQELAGVVIFSAIPFTAVKAIANSPLGESLQRRLEE 91

Query: 914  TKAAAVENSSKFKASVEKARKESFWYGEKRPRWLGPIPYEYPAHLTGELPGDYGFDVAGL 735
             K  AV+ SSKFKA  +KARKESFWYGE+RPRWLGPI Y+YP +L+GELPGDYGFDVAGL
Sbjct: 92   RKKLAVQQSSKFKALAQKARKESFWYGEERPRWLGPISYQYPTYLSGELPGDYGFDVAGL 151

Query: 734  SKDPVAFQKYFNFEILHARWAMLAALGALVPELLDLSGVIHFIEPVWWRVGYAKLKGDTL 555
            ++DPVAFQ+YFNFEILHARWAMLAALGAL+PE+LDLSG  HFIEPVWWRVGY+KLKGDTL
Sbjct: 152  AEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLSGAFHFIEPVWWRVGYSKLKGDTL 211

Query: 554  DYLGVPGLHIAGSQGVLVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGILF 375
            DYLG+PGLH AG QGVLVIA CQA+LMVGPEYARYCGIEALEPLGIYLPGDINYPGGILF
Sbjct: 212  DYLGIPGLHFAGGQGVLVIAFCQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGILF 271

Query: 374  DPLGLSKDPIAFEELKVKEMKNGRLAMVAWLGFYLQAALTGKGPIQNLLEHISDPLHKNI 195
            DPL LSKDP++FEELKVKE+KNGRLAMVAWLGFY+QAALTGKGP++NL+EHISDPLH N+
Sbjct: 272  DPLNLSKDPVSFEELKVKEIKNGRLAMVAWLGFYIQAALTGKGPVENLVEHISDPLHNNL 331

Query: 194  LSQI 183
             S +
Sbjct: 332  FSTL 335


>ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
            chloroplastic-like [Cucumis sativus]
          Length = 338

 Score =  503 bits (1295), Expect = e-140
 Identities = 238/300 (79%), Positives = 269/300 (89%)
 Frame = -3

Query: 1088 TQRNRSLNHTLKSSSYSSCRASWQELAGVLIFSAIPFTAVKAIANSSIGVGLQRRMIETK 909
            T  N   NH++  S  S+CRASWQELAGVLIFSAIPFTAVKAIANS +G  LQR++ + K
Sbjct: 33   TTLNLRSNHSI--SHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKK 90

Query: 908  AAAVENSSKFKASVEKARKESFWYGEKRPRWLGPIPYEYPAHLTGELPGDYGFDVAGLSK 729
             +AV NSSKFKA  E+ARK+S WYGE+RPRWLGP+PY+YP +LTGELPGDYGFD+AGLS+
Sbjct: 91   NSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSE 150

Query: 728  DPVAFQKYFNFEILHARWAMLAALGALVPELLDLSGVIHFIEPVWWRVGYAKLKGDTLDY 549
            DPVAFQK+FNFEILHARWAMLA+LGALVPE+LD+ G  HF EP+WWRVGY+KLKGDTLDY
Sbjct: 151  DPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDY 210

Query: 548  LGVPGLHIAGSQGVLVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGILFDP 369
            LG+PGLH+AGSQGV+VIAICQA+LMVGPEYARYCGIEALEPLGIYLPGDINYPGG+LFDP
Sbjct: 211  LGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDP 270

Query: 368  LGLSKDPIAFEELKVKEMKNGRLAMVAWLGFYLQAALTGKGPIQNLLEHISDPLHKNILS 189
            L LSKD  AFEELKVKE+KNGRLAMVAWLGFY QAALTGKGP+QNLL+HI+DP H N LS
Sbjct: 271  LNLSKDAAAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLDHIADPFHNNFLS 330


>ref|XP_002510744.1| chlorophyll A/B binding protein, putative [Ricinus communis]
            gi|223551445|gb|EEF52931.1| chlorophyll A/B binding
            protein, putative [Ricinus communis]
          Length = 329

 Score =  502 bits (1293), Expect = e-140
 Identities = 238/283 (84%), Positives = 258/283 (91%)
 Frame = -3

Query: 1040 SSCRASWQELAGVLIFSAIPFTAVKAIANSSIGVGLQRRMIETKAAAVENSSKFKASVEK 861
            S C+ASWQELAGVL+FSAIPFTAVKA+ANS +G  LQRR+ E+K  AV+ SSKF+A   K
Sbjct: 41   SPCKASWQELAGVLVFSAIPFTAVKALANSPLGESLQRRLEESKKVAVKESSKFQALTAK 100

Query: 860  ARKESFWYGEKRPRWLGPIPYEYPAHLTGELPGDYGFDVAGLSKDPVAFQKYFNFEILHA 681
            ARKES WYGE+RPRWLGPIPY+YPA+LTGELPGDYGFDVAGLSKD VAFQ+YFNFEILHA
Sbjct: 101  ARKESLWYGEERPRWLGPIPYDYPAYLTGELPGDYGFDVAGLSKDSVAFQRYFNFEILHA 160

Query: 680  RWAMLAALGALVPELLDLSGVIHFIEPVWWRVGYAKLKGDTLDYLGVPGLHIAGSQGVLV 501
            RWAMLAALGAL PE+LDLSG  HFIEPVWWRVGY+KLKGDTLDYLG+PGLH AGSQGVLV
Sbjct: 161  RWAMLAALGALAPEVLDLSGAFHFIEPVWWRVGYSKLKGDTLDYLGIPGLHFAGSQGVLV 220

Query: 500  IAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGILFDPLGLSKDPIAFEELKVK 321
            IAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGG LFDPL LS D +A EELKVK
Sbjct: 221  IAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGPLFDPLNLSSDAVALEELKVK 280

Query: 320  EMKNGRLAMVAWLGFYLQAALTGKGPIQNLLEHISDPLHKNIL 192
            E+KNGRLAMVAWLGFY QAALTGKGP+QNL+EHISDP H N+L
Sbjct: 281  EIKNGRLAMVAWLGFYAQAALTGKGPVQNLVEHISDPFHNNLL 323


>ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
            chloroplastic-like [Cucumis sativus]
          Length = 338

 Score =  501 bits (1291), Expect = e-139
 Identities = 238/300 (79%), Positives = 268/300 (89%)
 Frame = -3

Query: 1088 TQRNRSLNHTLKSSSYSSCRASWQELAGVLIFSAIPFTAVKAIANSSIGVGLQRRMIETK 909
            T  N   NH++  S  S+CRASWQELAGVLIFSAIPFTAVKAIANS +G  LQR++ + K
Sbjct: 33   TTLNLRSNHSI--SHRSTCRASWQELAGVLIFSAIPFTAVKAIANSPLGGSLQRQLEKKK 90

Query: 908  AAAVENSSKFKASVEKARKESFWYGEKRPRWLGPIPYEYPAHLTGELPGDYGFDVAGLSK 729
             +AV NSSKFKA  E+ARK+S WYGE+RPRWLGP+PY+YP +LTGELPGDYGFD+AGLS+
Sbjct: 91   NSAVANSSKFKALAEEARKDSSWYGEERPRWLGPLPYDYPKYLTGELPGDYGFDIAGLSE 150

Query: 728  DPVAFQKYFNFEILHARWAMLAALGALVPELLDLSGVIHFIEPVWWRVGYAKLKGDTLDY 549
            DPVAFQK+FNFEILHARWAMLA+LGALVPE+LD+ G  HF EP+WWRVGY+KLKGDTLDY
Sbjct: 151  DPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDY 210

Query: 548  LGVPGLHIAGSQGVLVIAICQALLMVGPEYARYCGIEALEPLGIYLPGDINYPGGILFDP 369
            LG+PGLH+AGSQGV+VIAICQA+LMVGPEYARYCGIEALEPLGIYLPGDINYPGG+LFDP
Sbjct: 211  LGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDP 270

Query: 368  LGLSKDPIAFEELKVKEMKNGRLAMVAWLGFYLQAALTGKGPIQNLLEHISDPLHKNILS 189
            L LSKD  AFEELKVKE+KNGRLAMVAWLGFY QAALTGKGP+QNLL HI+DP H N LS
Sbjct: 271  LNLSKDAEAFEELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNLLNHIADPFHNNFLS 330