BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019279
         (652 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera]   123   2e-44
ref|XP_002284215.1| PREDICTED: RNA and export factor-binding pro...   123   2e-44
ref|XP_002531375.1| RNA and export factor binding protein, putat...   112   8e-41
ref|XP_003538006.1| PREDICTED: RNA and export factor-binding pro...   114   1e-40
ref|XP_003543506.1| PREDICTED: THO complex subunit 4-A-like [Gly...   109   2e-40

>emb|CAN83715.1| hypothetical protein VITISV_023787 [Vitis vinifera]
          Length = 281

 Score =  123 bits (309), Expect(2) = 2e-44
 Identities = 79/131 (60%), Positives = 86/131 (65%), Gaps = 12/131 (9%)
 Frame = -3

Query: 584 MSNALDMSLDDLIKXXXXXXXXXXXXXXNDTTSAPGVGPARRRFPNRTGNRTTTPYSTT- 408
           MSNALDMSLDDLIK                     G GPARR  PNR  NR T PYS + 
Sbjct: 1   MSNALDMSLDDLIKNNKRSGGGGNARGRG---RGSGPGPARR-LPNRGANRIT-PYSVSK 55

Query: 407 APK------MFQDQMGA-----GRSSSIETGTKLYISNLDYGVSDDDIKELFSEVGDLKR 261
           AP+      MF DQ  A     GR+S+IETGTKLYISNLDYGVS++DIKELFSEVGDLKR
Sbjct: 56  APETTWQHDMFADQAAAYPAQAGRTSAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKR 115

Query: 260 YSVDYDRSGRS 228
           YS+ YDRSGRS
Sbjct: 116 YSIHYDRSGRS 126



 Score = 82.0 bits (201), Expect(2) = 2e-44
 Identities = 41/57 (71%), Positives = 48/57 (84%), Gaps = 3/57 (5%)
 Frame = -1

Query: 163 YDRSGRSKGTAEVVYSRKADALVALKRYDNVQLDGKAMKIEIAGASI---AALPPAT 2
           YDRSGRSKGTAEVV+SR+ DA+ A+KRY+NVQLDGK MKIEI G +I   AA+PP T
Sbjct: 120 YDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAVPPVT 176


>ref|XP_002284215.1| PREDICTED: RNA and export factor-binding protein 2 [Vitis vinifera]
           gi|297746115|emb|CBI16171.3| unnamed protein product
           [Vitis vinifera]
          Length = 243

 Score =  123 bits (309), Expect(2) = 2e-44
 Identities = 79/131 (60%), Positives = 86/131 (65%), Gaps = 12/131 (9%)
 Frame = -3

Query: 584 MSNALDMSLDDLIKXXXXXXXXXXXXXXNDTTSAPGVGPARRRFPNRTGNRTTTPYSTT- 408
           MSNALDMSLDDLIK                     G GPARR  PNR  NR T PYS + 
Sbjct: 1   MSNALDMSLDDLIKNNKRSGGGGNARGRG---RGSGPGPARR-LPNRGANRIT-PYSVSK 55

Query: 407 APK------MFQDQMGA-----GRSSSIETGTKLYISNLDYGVSDDDIKELFSEVGDLKR 261
           AP+      MF DQ  A     GR+S+IETGTKLYISNLDYGVS++DIKELFSEVGDLKR
Sbjct: 56  APETTWQHDMFADQAAAYPAQAGRTSAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKR 115

Query: 260 YSVDYDRSGRS 228
           YS+ YDRSGRS
Sbjct: 116 YSIHYDRSGRS 126



 Score = 82.0 bits (201), Expect(2) = 2e-44
 Identities = 41/57 (71%), Positives = 48/57 (84%), Gaps = 3/57 (5%)
 Frame = -1

Query: 163 YDRSGRSKGTAEVVYSRKADALVALKRYDNVQLDGKAMKIEIAGASI---AALPPAT 2
           YDRSGRSKGTAEVV+SR+ DA+ A+KRY+NVQLDGK MKIEI G +I   AA+PP T
Sbjct: 120 YDRSGRSKGTAEVVFSRRGDAVAAVKRYNNVQLDGKPMKIEIVGTNIATPAAVPPVT 176


>ref|XP_002531375.1| RNA and export factor binding protein, putative [Ricinus communis]
           gi|223529035|gb|EEF31023.1| RNA and export factor
           binding protein, putative [Ricinus communis]
          Length = 247

 Score =  112 bits (281), Expect(2) = 8e-41
 Identities = 72/135 (53%), Positives = 80/135 (59%), Gaps = 16/135 (11%)
 Frame = -3

Query: 584 MSNALDMSLDDLIKXXXXXXXXXXXXXXNDTTSAPGVGPARRRFPNRTGNRTT------T 423
           MS+ALDMSLDD+IK                +    G GP RR F NR  NR         
Sbjct: 1   MSSALDMSLDDIIKSNKKPGSGNSRGRGRSS----GPGPTRR-FNNRGTNRAAPYAAAKA 55

Query: 422 PYSTTAPKMFQDQMGAG----------RSSSIETGTKLYISNLDYGVSDDDIKELFSEVG 273
           P ST    MF DQ G G          R+S IETGTKLYISNL+YGVS++DIKELFSEVG
Sbjct: 56  PESTWQHDMFTDQGGMGMFQGQGGGGSRASGIETGTKLYISNLEYGVSNEDIKELFSEVG 115

Query: 272 DLKRYSVDYDRSGRS 228
           DLKRYS+ YDRSGRS
Sbjct: 116 DLKRYSIHYDRSGRS 130



 Score = 80.5 bits (197), Expect(2) = 8e-41
 Identities = 41/54 (75%), Positives = 46/54 (85%)
 Frame = -1

Query: 163 YDRSGRSKGTAEVVYSRKADALVALKRYDNVQLDGKAMKIEIAGASIAALPPAT 2
           YDRSGRSKGTAEVV+SR+ DAL A+KRY+NVQLDGK MKIEI G +IA  P AT
Sbjct: 124 YDRSGRSKGTAEVVFSRRTDALAAVKRYNNVQLDGKPMKIEIVGTNIAT-PAAT 176


>ref|XP_003538006.1| PREDICTED: RNA and export factor-binding protein 2-like [Glycine
           max]
          Length = 247

 Score =  114 bits (284), Expect(2) = 1e-40
 Identities = 71/134 (52%), Positives = 83/134 (61%), Gaps = 15/134 (11%)
 Frame = -3

Query: 584 MSNALDMSLDDLIKXXXXXXXXXXXXXXNDTTSAPGVGPARRRFPNRTGNRTTTPYSTT- 408
           MS A+DMSLDD+IK                + S P      RRFPNR  NR   PY+T  
Sbjct: 1   MSAAMDMSLDDIIKNNKKSGSGSSRGRIRPSGSGPS-----RRFPNRAANRAA-PYATAK 54

Query: 407 APK------MFQDQMGA--------GRSSSIETGTKLYISNLDYGVSDDDIKELFSEVGD 270
           AP+      ++ DQ  A        GR++SIETGTKLYISNLDYGVS DDIKELF+EVGD
Sbjct: 55  APEATWQHDLYADQQVAAAGYPAQGGRAASIETGTKLYISNLDYGVSSDDIKELFAEVGD 114

Query: 269 LKRYSVDYDRSGRS 228
           LKR++V YDRSGRS
Sbjct: 115 LKRHAVHYDRSGRS 128



 Score = 78.6 bits (192), Expect(2) = 1e-40
 Identities = 37/48 (77%), Positives = 44/48 (91%)
 Frame = -1

Query: 163 YDRSGRSKGTAEVVYSRKADALVALKRYDNVQLDGKAMKIEIAGASIA 20
           YDRSGRSKGTAEVV+SR+ADA+ A+KRY+NVQLDGK MKIEI G +I+
Sbjct: 122 YDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIS 169


>ref|XP_003543506.1| PREDICTED: THO complex subunit 4-A-like [Glycine max]
          Length = 243

 Score =  109 bits (272), Expect(2) = 2e-40
 Identities = 69/130 (53%), Positives = 81/130 (62%), Gaps = 11/130 (8%)
 Frame = -3

Query: 584 MSNALDMSLDDLIKXXXXXXXXXXXXXXNDTTSAPGVGPARRRFPNRTGNRTTTPYSTTA 405
           MS ALDM+L+D+IK                   A G GPARR  PNR  NR     +  A
Sbjct: 1   MSAALDMTLEDIIKNNKKSSLANTRGRGR----ASGPGPARR-LPNRAANRAAPYAAAKA 55

Query: 404 PK------MFQDQMGA-----GRSSSIETGTKLYISNLDYGVSDDDIKELFSEVGDLKRY 258
           P+      M+ +Q  A     GR+SSIETGTKLYISNLDYGVS+DDIKELF EVGD+KR+
Sbjct: 56  PETAWKHDMYANQPVAAAYPGGRASSIETGTKLYISNLDYGVSNDDIKELFLEVGDVKRH 115

Query: 257 SVDYDRSGRS 228
           +V YDRSGRS
Sbjct: 116 TVHYDRSGRS 125



 Score = 82.4 bits (202), Expect(2) = 2e-40
 Identities = 41/55 (74%), Positives = 48/55 (87%), Gaps = 2/55 (3%)
 Frame = -1

Query: 163 YDRSGRSKGTAEVVYSRKADALVALKRYDNVQLDGKAMKIEIAGASIA--ALPPA 5
           YDRSGRSKGTAEVV+SR+ADA+ A+KRY+NVQLDGK MK+EI G +IA  A PPA
Sbjct: 119 YDRSGRSKGTAEVVFSRRADAVAAVKRYNNVQLDGKPMKVEIVGTNIATHAAPPA 173