BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019276
         (952 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis v...   341   1e-91
emb|CBI26376.3| unnamed protein product [Vitis vinifera]              341   1e-91
ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus ...   332   1e-88
dbj|BAF03494.1| XRCC4 homolog [Populus nigra]                         318   9e-85
ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatul...   316   5e-84

>ref|XP_002284388.2| PREDICTED: DNA repair protein XRCC4 [Vitis vinifera]
          Length = 259

 Score =  341 bits (875), Expect = 1e-91
 Identities = 176/254 (69%), Positives = 207/254 (81%), Gaps = 10/254 (3%)
 Frame = -2

Query: 948 TTRHTCLRLQLAQKSDEDVIFIKGTWFDSHFALSITDGLDAWVCNASEDEVQERADQWDQ 769
           T RH+CL+LQ+  +S+   IFIK TWF SHF LSITDGL AW+CNASEDEV+ERA QWDQ
Sbjct: 4   TPRHSCLKLQIPNQSEP--IFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWDQ 61

Query: 768 PVSEYIEIAERYLGFQQPSSNYSFSDVGNGNMRLSWTFEKEGIKLEWRWKCKPSTNNKKT 589
           PVS+YI +AER+LGFQQP S Y FSD G+G+ RLSWTFEKEG KLEWRWKC  S +++ T
Sbjct: 62  PVSDYIALAERFLGFQQPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSRST 121

Query: 588 TAEILDFLMDANIRLSEEVVRKTQSFEKLKVEAEKCLAQSEKFNSEKAEFESAIYAKFVA 409
           TA +LDFLM+ANIRLSEEVV KTQSFE+LKVEAEKCLAQSEKFN+EKAEFESAIYAKF+ 
Sbjct: 122 TAGVLDFLMNANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKFLG 181

Query: 408 VLNSKKAKLRELRD-------GGKAPQEEDVSTE---SYDEETDNDKSDEEAVESLAGTS 259
           VLNSKKAKLRELRD        GK PQEED ST+   S+D+E+DN+  +EE+ ++L GTS
Sbjct: 182 VLNSKKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNLTGTS 241

Query: 258 KSVPAATRQIGRKR 217
           K V + +R  GRKR
Sbjct: 242 KHV-STSRPRGRKR 254


>emb|CBI26376.3| unnamed protein product [Vitis vinifera]
          Length = 258

 Score =  341 bits (875), Expect = 1e-91
 Identities = 176/254 (69%), Positives = 207/254 (81%), Gaps = 10/254 (3%)
 Frame = -2

Query: 948 TTRHTCLRLQLAQKSDEDVIFIKGTWFDSHFALSITDGLDAWVCNASEDEVQERADQWDQ 769
           T RH+CL+LQ+  +S+   IFIK TWF SHF LSITDGL AW+CNASEDEV+ERA QWDQ
Sbjct: 4   TPRHSCLKLQIPNQSEP--IFIKATWFPSHFHLSITDGLHAWLCNASEDEVRERAAQWDQ 61

Query: 768 PVSEYIEIAERYLGFQQPSSNYSFSDVGNGNMRLSWTFEKEGIKLEWRWKCKPSTNNKKT 589
           PVS+YI +AER+LGFQQP S Y FSD G+G+ RLSWTFEKEG KLEWRWKC  S +++ T
Sbjct: 62  PVSDYIALAERFLGFQQPGSVYGFSDAGDGHRRLSWTFEKEGTKLEWRWKCGLSPDSRST 121

Query: 588 TAEILDFLMDANIRLSEEVVRKTQSFEKLKVEAEKCLAQSEKFNSEKAEFESAIYAKFVA 409
           TA +LDFLM+ANIRLSEEVV KTQSFE+LKVEAEKCLAQSEKFN+EKAEFESAIYAKF+ 
Sbjct: 122 TAGVLDFLMNANIRLSEEVVIKTQSFERLKVEAEKCLAQSEKFNNEKAEFESAIYAKFLG 181

Query: 408 VLNSKKAKLRELRD-------GGKAPQEEDVSTE---SYDEETDNDKSDEEAVESLAGTS 259
           VLNSKKAKLRELRD        GK PQEED ST+   S+D+E+DN+  +EE+ ++L GTS
Sbjct: 182 VLNSKKAKLRELRDQISKEETTGKLPQEEDESTDKTLSFDDESDNEAIEEESSKNLTGTS 241

Query: 258 KSVPAATRQIGRKR 217
           K V + +R  GRKR
Sbjct: 242 KHV-STSRPRGRKR 254


>ref|XP_002517008.1| DNA-repair protein XRCC4, putative [Ricinus communis]
           gi|223543643|gb|EEF45171.1| DNA-repair protein XRCC4,
           putative [Ricinus communis]
          Length = 265

 Score =  332 bits (850), Expect = 1e-88
 Identities = 170/260 (65%), Positives = 203/260 (78%), Gaps = 12/260 (4%)
 Frame = -2

Query: 948 TTRHTCLRLQLAQKSDEDVIFIKGTWFDSHFALSITDGLDAWVCNASEDEVQERADQWDQ 769
           T RHTCL+L++ +      IF+KGTWFDSHF LSITDGL+AWVCNA+E +V+ERA QWDQ
Sbjct: 12  TARHTCLKLEITEP-----IFVKGTWFDSHFHLSITDGLNAWVCNATEGQVKERAAQWDQ 66

Query: 768 PVSEYIEIAERYLGFQQPSSNYSFSDVGNGNMRLSWTFEKEGIKLEWRWKCKPSTNNKKT 589
           PVSEYI +AE YLGFQQP S Y F+D G+ + RLSWTFEKEG KLEWRWKC+PS +NK T
Sbjct: 67  PVSEYINLAEHYLGFQQPGSIYRFADAGDSHKRLSWTFEKEGTKLEWRWKCQPSPDNKMT 126

Query: 588 TAEILDFLMDANIRLSEEVVRKTQSFEKLKVEAEKCLAQSEKFNSEKAEFESAIYAKFVA 409
           TA ILDFLMDANIRLSEEVV+KT SFE+LK EA+KCL QSE+F  EK EFES+IYAKF+A
Sbjct: 127 TAGILDFLMDANIRLSEEVVKKTHSFERLKEEADKCLTQSERFAGEKTEFESSIYAKFLA 186

Query: 408 VLNSKKAKLRELRD-------GGKAPQEEDV----STESYDEE-TDNDKSDEEAVESLAG 265
           VLNSKK KLR+LRD        GK PQEE+      TES++E+ +D DKS+EE  E + G
Sbjct: 187 VLNSKKRKLRQLRDQLSKKEASGKLPQEEEEESTDKTESFEEDSSDGDKSEEEPPEKVTG 246

Query: 264 TSKSVPAATRQIGRKRKTQK 205
           TS+  P ++R  GRKR T+K
Sbjct: 247 TSEDKP-SSRGRGRKRITRK 265


>dbj|BAF03494.1| XRCC4 homolog [Populus nigra]
          Length = 255

 Score =  318 bits (816), Expect = 9e-85
 Identities = 166/255 (65%), Positives = 196/255 (76%), Gaps = 9/255 (3%)
 Frame = -2

Query: 942 RHTCLRLQLAQKSDEDVIFIKGTWFDSHFALSITDGLDAWVCNASEDEVQERADQWDQPV 763
           RHTCL+L++ +      IFIKGTWF  HF LSITDGL++W CNA+E+EV+ RA QWDQPV
Sbjct: 7   RHTCLKLEIPEP-----IFIKGTWFPFHFNLSITDGLNSWFCNATEEEVRGRAAQWDQPV 61

Query: 762 SEYIEIAERYLGFQQPSSNYSFSDVGNGNMRLSWTFEKEGIKLEWRWKCKPSTNNKKTTA 583
           S YI++AE++LGFQ P S Y F+D G GN RLSWTFEKEG KLEWRWKC+PS + KKTT 
Sbjct: 62  STYIQLAEKHLGFQIPGSVYKFTDAGEGNKRLSWTFEKEGTKLEWRWKCQPSPDTKKTTT 121

Query: 582 EILDFLMDANIRLSEEVVRKTQSFEKLKVEAEKCLAQSEKFNSEKAEFESAIYAKFVAVL 403
            ILDFLMDANIRLSEEVVRKTQSFE+LK EAEKCLAQSEKFNS+K EFE+A+YAKF+ VL
Sbjct: 122 LILDFLMDANIRLSEEVVRKTQSFERLKGEAEKCLAQSEKFNSQKMEFEAAVYAKFLGVL 181

Query: 402 NSKKAKLRELRD-------GGKAPQEEDVS--TESYDEETDNDKSDEEAVESLAGTSKSV 250
           NSKK KLRELRD        G++ QE + S  TES+D  +D++KS E+  E LAGTSK  
Sbjct: 182 NSKKRKLRELRDQLSKKEISGESAQEGEDSDKTESFDRGSDDEKSVEKPREKLAGTSKD- 240

Query: 249 PAATRQIGRKRKTQK 205
           P   R   RK+ T K
Sbjct: 241 PPPRRGYVRKKITHK 255


>ref|XP_003590794.1| DNA repair protein XRCC4 [Medicago truncatula]
           gi|355479842|gb|AES61045.1| DNA repair protein XRCC4
           [Medicago truncatula]
          Length = 256

 Score =  316 bits (810), Expect = 5e-84
 Identities = 161/254 (63%), Positives = 196/254 (77%), Gaps = 9/254 (3%)
 Frame = -2

Query: 942 RHTCLRLQLAQKSDEDVIFIKGTWFDSHFALSITDGLDAWVCNASEDEVQERADQWDQPV 763
           RHTCL+LQL   ++E+ IF+KGTWF++HF LSITDG  +W CNASEDEV++RA QWDQPV
Sbjct: 6   RHTCLKLQL---TEEESIFVKGTWFNTHFNLSITDGSTSWHCNASEDEVKQRAAQWDQPV 62

Query: 762 SEYIEIAERYLGFQQPSSNYSFSDVGNGNMRLSWTFEKEGIKLEWRWKCKPSTNNKKTTA 583
            EY+E++ERYLGFQQP S Y+F+D G+ + RLSWTFEK G+ L WRWKC  S + KKTTA
Sbjct: 63  EEYVELSERYLGFQQPESVYAFADAGDAHKRLSWTFEKGGMTLHWRWKCMKSPDCKKTTA 122

Query: 582 EILDFLMDANIRLSEEVVRKTQSFEKLKVEAEKCLAQSEKFNSEKAEFESAIYAKFVAVL 403
           EILDFLMDANIRLSEEVV KT+ FEK KVEAEKCLAQSE+  +E+ EFES IY KF+ VL
Sbjct: 123 EILDFLMDANIRLSEEVVIKTELFEKTKVEAEKCLAQSERIANERVEFESQIYTKFLGVL 182

Query: 402 NSKKAKLRELRD-------GGKAPQEED--VSTESYDEETDNDKSDEEAVESLAGTSKSV 250
           NSKKAKLRELRD       G K+PQEE+    TES+DEE+D+ KSDE+  + +  +SK  
Sbjct: 183 NSKKAKLRELRDQLSKQGNGDKSPQEEEDPEKTESFDEESDDGKSDEDPQKCITSSSKDA 242

Query: 249 PAATRQIGRKRKTQ 208
            A  R   R R+T+
Sbjct: 243 GATKR--SRPRRTR 254