BLASTX nr result
ID: Cimicifuga21_contig00019269
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00019269
(1559 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002328386.1| predicted protein [Populus trichocarpa] gi|2... 48 3e-08
gb|ABC42330.1| PPR protein [Oryza sativa Indica Group] 49 3e-08
sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; ... 49 3e-08
emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera] 47 2e-07
ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat... 47 2e-07
>ref|XP_002328386.1| predicted protein [Populus trichocarpa] gi|222838101|gb|EEE76466.1|
predicted protein [Populus trichocarpa]
Length = 617
Score = 47.8 bits (112), Expect(3) = 3e-08
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = -1
Query: 1256 VEKAT*LFNEMDDYGISMGVLIYNSIIDDICKVGMINEAHKLSEMIIEKGSKPN 1095
+ +AT LF EM + + +N ++D +CK GM++EA +SE + EKG++PN
Sbjct: 287 LNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPN 340
Score = 33.1 bits (74), Expect(3) = 3e-08
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = -2
Query: 1114 KKEASPIMVTYNALMNGLCLQGRIEETKKFL 1022
+K A P TYNALM+G CL +++E K L
Sbjct: 334 EKGAEPNAYTYNALMDGYCLHNQMDEAIKVL 364
Score = 24.3 bits (51), Expect(3) = 3e-08
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 975 LFNGCSKTRRINNAVKLLEICRESN 901
L NG K++R+N A +LL E N
Sbjct: 382 LINGYCKSKRMNEAKRLLSEMSEKN 406
>gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
Length = 791
Score = 48.5 bits (114), Expect(2) = 3e-08
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = -1
Query: 1253 EKAT*LFNEMDDYGISMGVLIYNSIIDDICKVGMINEAHKLSEMIIEKGSKPN 1095
E+A L EM D GI + + +NSIID CK G + E+ KL E+++ G KPN
Sbjct: 458 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPN 510
Score = 37.4 bits (85), Expect(2) = 3e-08
Identities = 28/115 (24%), Positives = 51/115 (44%)
Frame = -2
Query: 1099 PIMVTYNALMNGLCLQGRIEETKKFLINGC*SLTLHCYLFSFIQWMFQD*TNK*CRQTFR 920
P ++TYN L+NG CL G+++E K L++G S+ L
Sbjct: 509 PNVITYNTLINGYCLAGKMDEAMK-LLSGMVSVGL------------------------- 542
Query: 919 DMQGI*HSALLTTVPL*AGYAWLEKFCMHIISLRYMQAYGSSPDLVTYATLMDEL 755
+ +S L+ GY + + ++ + M++ G SPD++TY ++ L
Sbjct: 543 KPNTVTYSTLIN------GYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591
>sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
restorer; AltName: Full=Protein PPR; AltName:
Full=Restorer for CMS; Flags: Precursor
gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa
Indica Group] gi|33859442|dbj|BAC77666.2| Rf1 [Oryza
sativa Indica Group] gi|41152689|dbj|BAD08214.1|
fertility restorer [Oryza sativa Indica Group]
gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa
Indica Group] gi|47550657|dbj|BAD20283.1| restorer for
CMS [Oryza sativa Indica Group]
Length = 791
Score = 48.5 bits (114), Expect(2) = 3e-08
Identities = 24/53 (45%), Positives = 33/53 (62%)
Frame = -1
Query: 1253 EKAT*LFNEMDDYGISMGVLIYNSIIDDICKVGMINEAHKLSEMIIEKGSKPN 1095
E+A L EM D GI + + +NSIID CK G + E+ KL E+++ G KPN
Sbjct: 458 ERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPN 510
Score = 37.4 bits (85), Expect(2) = 3e-08
Identities = 28/115 (24%), Positives = 51/115 (44%)
Frame = -2
Query: 1099 PIMVTYNALMNGLCLQGRIEETKKFLINGC*SLTLHCYLFSFIQWMFQD*TNK*CRQTFR 920
P ++TYN L+NG CL G+++E K L++G S+ L
Sbjct: 509 PNVITYNTLINGYCLAGKMDEAMK-LLSGMVSVGL------------------------- 542
Query: 919 DMQGI*HSALLTTVPL*AGYAWLEKFCMHIISLRYMQAYGSSPDLVTYATLMDEL 755
+ +S L+ GY + + ++ + M++ G SPD++TY ++ L
Sbjct: 543 KPNTVTYSTLIN------GYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGL 591
>emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
Length = 1037
Score = 47.0 bits (110), Expect(2) = 2e-07
Identities = 20/56 (35%), Positives = 38/56 (67%)
Frame = -1
Query: 1262 KSVEKAT*LFNEMDDYGISMGVLIYNSIIDDICKVGMINEAHKLSEMIIEKGSKPN 1095
++V++A LF+++ G+ V+ YN++ID CK+G ++ A KL + +IE+G P+
Sbjct: 798 ENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPS 853
Score = 36.2 bits (82), Expect(2) = 2e-07
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -2
Query: 1117 LKKEASPIMVTYNALMNGLCLQGRIEETKKFL 1022
+++ SP +VTY+AL+NGLC G IE + K L
Sbjct: 846 IEEGISPSVVTYSALINGLCKHGDIERSMKLL 877
>ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g19290-like [Vitis vinifera]
Length = 939
Score = 47.0 bits (110), Expect(2) = 2e-07
Identities = 20/56 (35%), Positives = 38/56 (67%)
Frame = -1
Query: 1262 KSVEKAT*LFNEMDDYGISMGVLIYNSIIDDICKVGMINEAHKLSEMIIEKGSKPN 1095
++V++A LF+++ G+ V+ YN++ID CK+G ++ A KL + +IE+G P+
Sbjct: 798 ENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPS 853
Score = 36.2 bits (82), Expect(2) = 2e-07
Identities = 16/32 (50%), Positives = 23/32 (71%)
Frame = -2
Query: 1117 LKKEASPIMVTYNALMNGLCLQGRIEETKKFL 1022
+++ SP +VTY+AL+NGLC G IE + K L
Sbjct: 846 IEEGISPSVVTYSALINGLCKHGDIERSMKLL 877