BLASTX nr result

ID: Cimicifuga21_contig00019180 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019180
         (289 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002332635.1| predicted protein [Populus trichocarpa] gi|2...   106   2e-21
ref|XP_002273131.2| PREDICTED: rab proteins geranylgeranyltransf...   104   9e-21
emb|CAN62777.1| hypothetical protein VITISV_019372 [Vitis vinifera]   104   9e-21
ref|XP_004159757.1| PREDICTED: rab proteins geranylgeranyltransf...   102   3e-20
ref|XP_004146177.1| PREDICTED: rab proteins geranylgeranyltransf...   102   3e-20

>ref|XP_002332635.1| predicted protein [Populus trichocarpa] gi|222832862|gb|EEE71339.1|
           predicted protein [Populus trichocarpa]
          Length = 553

 Score =  106 bits (264), Expect = 2e-21
 Identities = 54/103 (52%), Positives = 67/103 (65%), Gaps = 9/103 (8%)
 Frame = -1

Query: 289 LVMGPSFIVPLPSPVQD---------LQQKRSDEQVARAVCIMRGSIMSGLSNLLVIFPP 137
           LV+ PSF +  PS             L  +    +VAR +CI R S+   +SNLLV++PP
Sbjct: 345 LVLDPSFTLASPSASPSDLLHESFNFLSTRDVKGKVARGICITRNSLKPDMSNLLVVYPP 404

Query: 136 RSLYPEQVASVRVLQLSNNLAVCPSGLFVLYLSVLCDDEAQGK 8
           RSLYPEQ+ S+R LQ+S NLAVCP G+FVLYLS LCDD  QGK
Sbjct: 405 RSLYPEQITSIRALQISGNLAVCPLGMFVLYLSALCDDAIQGK 447


>ref|XP_002273131.2| PREDICTED: rab proteins geranylgeranyltransferase component A
           2-like [Vitis vinifera] gi|296088658|emb|CBI37649.3|
           unnamed protein product [Vitis vinifera]
          Length = 556

 Score =  104 bits (259), Expect = 9e-21
 Identities = 52/105 (49%), Positives = 73/105 (69%), Gaps = 10/105 (9%)
 Frame = -1

Query: 289 LVMGPSFIVPLP-SPVQ-DLQQKRSD--------EQVARAVCIMRGSIMSGLSNLLVIFP 140
           L++ PSFIVP+P +P Q D   + S         ++VAR +CIM+ S+   +SN + ++P
Sbjct: 346 LLVDPSFIVPVPVAPSQPDCMPESSQVINLVDAKQKVARGICIMKSSLKPDVSNFVFVYP 405

Query: 139 PRSLYPEQVASVRVLQLSNNLAVCPSGLFVLYLSVLCDDEAQGKE 5
           PRSLYPEQ  ++R +Q+ +NL VCPSG+FVLYLS LC+D  QGKE
Sbjct: 406 PRSLYPEQAMAIRAVQIGSNLGVCPSGMFVLYLSTLCNDATQGKE 450


>emb|CAN62777.1| hypothetical protein VITISV_019372 [Vitis vinifera]
          Length = 812

 Score =  104 bits (259), Expect = 9e-21
 Identities = 52/105 (49%), Positives = 73/105 (69%), Gaps = 10/105 (9%)
 Frame = -1

Query: 289 LVMGPSFIVPLP-SPVQ-DLQQKRSD--------EQVARAVCIMRGSIMSGLSNLLVIFP 140
           L++ PSFIVP+P +P Q D   + S         ++VAR +CIM+ S+   +SN + ++P
Sbjct: 412 LLVDPSFIVPVPVAPSQPDCMPESSQVINLVYAKQKVARGICIMKSSLKPDVSNFVFVYP 471

Query: 139 PRSLYPEQVASVRVLQLSNNLAVCPSGLFVLYLSVLCDDEAQGKE 5
           PRSLYPEQ  ++R +Q+ +NL VCPSG+FVLYLS LC+D  QGKE
Sbjct: 472 PRSLYPEQAMAIRAVQIGSNLGVCPSGMFVLYLSTLCNDATQGKE 516


>ref|XP_004159757.1| PREDICTED: rab proteins geranylgeranyltransferase component A
           2-like, partial [Cucumis sativus]
          Length = 425

 Score =  102 bits (255), Expect = 3e-20
 Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 5/100 (5%)
 Frame = -1

Query: 289 LVMGPSFIVPLP-----SPVQDLQQKRSDEQVARAVCIMRGSIMSGLSNLLVIFPPRSLY 125
           LV+ P FIVP         +QD+  +  + +VAR +CI + SI+S + N L+++PP++L+
Sbjct: 223 LVLDPCFIVPQLFKLSLESLQDVSSRDVNRKVARGICITKHSIVSDVKNCLLVYPPKTLF 282

Query: 124 PEQVASVRVLQLSNNLAVCPSGLFVLYLSVLCDDEAQGKE 5
           PEQV+SVRVLQ+  NLAVCP  +FV+Y+S LCD   QGKE
Sbjct: 283 PEQVSSVRVLQIGGNLAVCPEDMFVIYISTLCDSANQGKE 322


>ref|XP_004146177.1| PREDICTED: rab proteins geranylgeranyltransferase component A
           1-like [Cucumis sativus]
          Length = 543

 Score =  102 bits (255), Expect = 3e-20
 Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 5/100 (5%)
 Frame = -1

Query: 289 LVMGPSFIVPLP-----SPVQDLQQKRSDEQVARAVCIMRGSIMSGLSNLLVIFPPRSLY 125
           LV+ P FIVP         +QD+  +  + +VAR +CI + SI+S + N L+++PP++L+
Sbjct: 341 LVLDPCFIVPQLFKLSLESLQDVSSRDVNRKVARGICITKHSIVSDVKNCLLVYPPKTLF 400

Query: 124 PEQVASVRVLQLSNNLAVCPSGLFVLYLSVLCDDEAQGKE 5
           PEQV+SVRVLQ+  NLAVCP  +FV+Y+S LCD   QGKE
Sbjct: 401 PEQVSSVRVLQIGGNLAVCPEDMFVIYISTLCDSANQGKE 440


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