BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019159
         (461 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containi...   102   4e-20
ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containi...    91   7e-17
ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containi...    91   7e-17
ref|XP_002510452.1| pentatricopeptide repeat-containing protein,...    91   1e-16
ref|XP_003615696.1| Pentatricopeptide repeat-containing protein ...    89   3e-16

>ref|XP_002280968.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Vitis vinifera]
          Length = 1545

 Score =  102 bits (253), Expect = 4e-20
 Identities = 62/126 (49%), Positives = 78/126 (61%), Gaps = 9/126 (7%)
 Frame = +1

Query: 109 MESSIVSCKSIPQIPNLLKQETPDVNSSKHSIP----TK--KPLTIYSN---SELHLNHL 261
           ME+ I+ CKS P +    KQ T    SS+   P    TK  +PLT       ++ HLNHL
Sbjct: 1   MENLILPCKSRPPLATPSKQGTSFECSSRIIQPRVSFTKIHQPLTPKLKPKVTDAHLNHL 60

Query: 262 CRNRQLKEAVIALDAIAKDGDKVTSNTYISLLQSCIDSNAIAQGRILHTRIGLVEDPNPF 441
           C+N +L +A+  LDAIA+ G  V  NTY+ LLQSCID  +   GR LH RIGL+E+ NPF
Sbjct: 61  CKNGRLADAIACLDAIAQGGSNVKPNTYMQLLQSCIDQGSAELGRKLHARIGLLEEMNPF 120

Query: 442 VETKLV 459
           VETKLV
Sbjct: 121 VETKLV 126


>ref|XP_004168675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like, partial [Cucumis sativus]
          Length = 1090

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 55/122 (45%), Positives = 77/122 (63%), Gaps = 5/122 (4%)
 Frame = +1

Query: 109 MESSIVSCKSIPQIP---NLLKQETPDVNSS--KHSIPTKKPLTIYSNSELHLNHLCRNR 273
           ME   + C++ P I    +++K      +S   K SI     LT   N + HL++LC N 
Sbjct: 1   MEKLAIPCQTNPPISGPASVIKPRPLKFSSKPIKTSIFFTYKLTSKFNDD-HLSYLCSNG 59

Query: 274 QLKEAVIALDAIAKDGDKVTSNTYISLLQSCIDSNAIAQGRILHTRIGLVEDPNPFVETK 453
            L+EA+ A+D+I+K G K+++NTYI+LLQ+CID  +I  GR LH R+GLV   NPFVETK
Sbjct: 60  LLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRMGLVHRVNPFVETK 119

Query: 454 LV 459
           LV
Sbjct: 120 LV 121


>ref|XP_004152769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g19720-like [Cucumis sativus]
          Length = 1463

 Score = 91.3 bits (225), Expect = 7e-17
 Identities = 55/122 (45%), Positives = 77/122 (63%), Gaps = 5/122 (4%)
 Frame = +1

Query: 109 MESSIVSCKSIPQIP---NLLKQETPDVNSS--KHSIPTKKPLTIYSNSELHLNHLCRNR 273
           ME   + C++ P I    +++K      +S   K SI     LT   N + HL++LC N 
Sbjct: 1   MEKLAIPCQTNPPISGPASVIKPRPLKFSSKPIKTSIFFTYKLTSKFNDD-HLSYLCSNG 59

Query: 274 QLKEAVIALDAIAKDGDKVTSNTYISLLQSCIDSNAIAQGRILHTRIGLVEDPNPFVETK 453
            L+EA+ A+D+I+K G K+++NTYI+LLQ+CID  +I  GR LH R+GLV   NPFVETK
Sbjct: 60  LLREAITAIDSISKRGSKLSTNTYINLLQTCIDVGSIELGRELHVRMGLVHRVNPFVETK 119

Query: 454 LV 459
           LV
Sbjct: 120 LV 121


>ref|XP_002510452.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223551153|gb|EEF52639.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1218

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 53/112 (47%), Positives = 72/112 (64%), Gaps = 3/112 (2%)
 Frame = +1

Query: 133 KSIPQIPNLLKQETPDVNSSK---HSIPTKKPLTIYSNSELHLNHLCRNRQLKEAVIALD 303
           KS   IPN  +Q+T    S+K    S+P  K +T     + HLN+LC+  +L EAV AL+
Sbjct: 11  KSPISIPN--EQDTLSAFSTKPTKSSVPFTKKIT-----DSHLNYLCKKGRLNEAVSALE 63

Query: 304 AIAKDGDKVTSNTYISLLQSCIDSNAIAQGRILHTRIGLVEDPNPFVETKLV 459
            IA+ G KV+  T+ISLLQSCID N++  GR +H    LV++ NPF+ETKLV
Sbjct: 64  LIAQHGSKVSPKTFISLLQSCIDCNSVTLGRKVHAHFHLVQEKNPFLETKLV 115


>ref|XP_003615696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355517031|gb|AES98654.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 887

 Score = 89.4 bits (220), Expect = 3e-16
 Identities = 48/93 (51%), Positives = 65/93 (69%)
 Frame = +1

Query: 181 VNSSKHSIPTKKPLTIYSNSELHLNHLCRNRQLKEAVIALDAIAKDGDKVTSNTYISLLQ 360
           VN++ +++ T KP +I    +  LN LC N  L EAV  LD++A+ G +V   TY++LLQ
Sbjct: 33  VNANSNNVSTTKP-SIRKLIDSQLNQLCINGSLSEAVTILDSLAEQGCRVKPITYMNLLQ 91

Query: 361 SCIDSNAIAQGRILHTRIGLVEDPNPFVETKLV 459
           SCID + I  G+ LH+RIGLVE+ NPFVETKLV
Sbjct: 92  SCIDKDCIFIGKELHSRIGLVENVNPFVETKLV 124