BLASTX nr result

ID: Cimicifuga21_contig00019029 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00019029
         (820 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519649.1| conserved hypothetical protein [Ricinus comm...   159   9e-37
gb|AFK39204.1| unknown [Lotus japonicus]                              156   6e-36
ref|XP_002282858.1| PREDICTED: uncharacterized protein LOC100262...   156   6e-36
ref|XP_003593896.1| Small nuclear ribonucleoprotein-associated p...   152   9e-35
ref|XP_002322446.1| predicted protein [Populus trichocarpa] gi|2...   152   9e-35

>ref|XP_002519649.1| conserved hypothetical protein [Ricinus communis]
           gi|223541066|gb|EEF42622.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 118

 Score =  159 bits (401), Expect = 9e-37
 Identities = 76/103 (73%), Positives = 88/103 (85%), Gaps = 1/103 (0%)
 Frame = +2

Query: 320 MEQPVESSVVKAGGSDGSNQKSCN-VSRAKKLLFRRMLVGVNDGRFFMGAFHCIDKQGNI 496
           +E+ +E S  + G SD SN  S   VSR +KLLFR+MLVG+ DGRFF+G FHCIDKQGNI
Sbjct: 5   VEKAMEVSAAQPGSSDKSNSNSSGPVSRVRKLLFRKMLVGIKDGRFFLGTFHCIDKQGNI 64

Query: 497 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRSSCHVDCSI 625
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIP+SCR++CHVDCSI
Sbjct: 65  ILQDAVEYRSTRRTSPSPMEQRCLGLILIPASCRTTCHVDCSI 107


>gb|AFK39204.1| unknown [Lotus japonicus]
          Length = 111

 Score =  156 bits (394), Expect = 6e-36
 Identities = 78/103 (75%), Positives = 88/103 (85%), Gaps = 1/103 (0%)
 Frame = +2

Query: 320 MEQPVESSV-VKAGGSDGSNQKSCNVSRAKKLLFRRMLVGVNDGRFFMGAFHCIDKQGNI 496
           MEQ  E  + V+ G SD S++    VSR +KLLFRRMLVG+ DGRFF+G F+CIDKQGNI
Sbjct: 1   MEQEAEQPIPVQVGTSDSSSR----VSRVRKLLFRRMLVGIKDGRFFLGGFYCIDKQGNI 56

Query: 497 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRSSCHVDCSI 625
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCR++CHVDCSI
Sbjct: 57  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRATCHVDCSI 99


>ref|XP_002282858.1| PREDICTED: uncharacterized protein LOC100262900 [Vitis vinifera]
          Length = 116

 Score =  156 bits (394), Expect = 6e-36
 Identities = 75/104 (72%), Positives = 86/104 (82%), Gaps = 1/104 (0%)
 Frame = +2

Query: 317 SMEQPVESSVVKAGGSDGSNQKSCN-VSRAKKLLFRRMLVGVNDGRFFMGAFHCIDKQGN 493
           +ME   E S +    S+GSN    N V++ + LLFRRMLVGV+DGRFF+G+FHC+DKQGN
Sbjct: 2   AMEHDAEKSFIHVESSEGSNPNGSNPVTKVRMLLFRRMLVGVSDGRFFLGSFHCMDKQGN 61

Query: 494 IILQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRSSCHVDCSI 625
           IILQD VEYRSTRRSSPSPMEQRCLGLILIP SCR+SCHVDCSI
Sbjct: 62  IILQDTVEYRSTRRSSPSPMEQRCLGLILIPFSCRTSCHVDCSI 105


>ref|XP_003593896.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
           truncatula] gi|357447245|ref|XP_003593898.1| Small
           nuclear ribonucleoprotein-associated protein B [Medicago
           truncatula] gi|355482944|gb|AES64147.1| Small nuclear
           ribonucleoprotein-associated protein B [Medicago
           truncatula] gi|355482946|gb|AES64149.1| Small nuclear
           ribonucleoprotein-associated protein B [Medicago
           truncatula] gi|388515765|gb|AFK45944.1| unknown
           [Medicago truncatula]
          Length = 113

 Score =  152 bits (384), Expect = 9e-35
 Identities = 75/102 (73%), Positives = 84/102 (82%)
 Frame = +2

Query: 320 MEQPVESSVVKAGGSDGSNQKSCNVSRAKKLLFRRMLVGVNDGRFFMGAFHCIDKQGNII 499
           MEQ  E  V   GGS  S + S  VSR +KLLFR+MLVG+ DGRFF+G F+C+DKQGNII
Sbjct: 1   MEQEAEQPVPVQGGSSDSLE-SDRVSRVRKLLFRQMLVGIKDGRFFLGNFYCMDKQGNII 59

Query: 500 LQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRSSCHVDCSI 625
           LQD VEYRSTRRSSPSPMEQRC+GLILIPSSCR SCHVDCS+
Sbjct: 60  LQDTVEYRSTRRSSPSPMEQRCIGLILIPSSCRMSCHVDCSV 101


>ref|XP_002322446.1| predicted protein [Populus trichocarpa] gi|222869442|gb|EEF06573.1|
           predicted protein [Populus trichocarpa]
          Length = 109

 Score =  152 bits (384), Expect = 9e-35
 Identities = 78/103 (75%), Positives = 88/103 (85%), Gaps = 1/103 (0%)
 Frame = +2

Query: 320 MEQPVE-SSVVKAGGSDGSNQKSCNVSRAKKLLFRRMLVGVNDGRFFMGAFHCIDKQGNI 496
           ME+ +E SS  +A  S  S+     VSRA+KLLFRRMLVG+ DGRFF+G+FHCIDKQGNI
Sbjct: 1   MEEEMEISSSTQATESSSSDI----VSRARKLLFRRMLVGIKDGRFFLGSFHCIDKQGNI 56

Query: 497 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRSSCHVDCSI 625
           ILQDAVEYR+T RSSPSPMEQRCLGLILIPSSCR+SCHVDCSI
Sbjct: 57  ILQDAVEYRNTHRSSPSPMEQRCLGLILIPSSCRTSCHVDCSI 99


Top