BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00018970
         (360 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                 79   4e-13
gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsi...    79   5e-13
gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsi...    77   1e-12
emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera]    74   9e-12
gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Ar...    74   2e-11

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score = 79.0 bits (193), Expect = 4e-13
 Identities = 37/90 (41%), Positives = 50/90 (55%)
 Frame = -3

Query: 271 ALLGVRAPLSVWHKRLGHPSKAVVQYLVHDKKLQXXXXXXXXXXXXXXSLGKSSRLPFLL 92
           AL+  +A +  WH+RLGHPS   +  +VH   L                LGKS RL F  
Sbjct: 721 ALMIAKADIHTWHRRLGHPSGGTLHSVVHKNHLPVIGYVNNMSVCTACQLGKSYRLSFST 780

Query: 91  SSCRSIKPLQIVHIDLWGPSPVNSISGFRF 2
             C S +PLQ++H D+WGPSP +S +G+RF
Sbjct: 781 LPCTSSRPLQLLHTDVWGPSPTSSCTGYRF 810


>gb|AAC61290.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1149

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 40/86 (46%), Positives = 53/86 (61%)
 Frame = -3

Query: 259 VRAPLSVWHKRLGHPSKAVVQYLVHDKKLQXXXXXXXXXXXXXXSLGKSSRLPFLLSSCR 80
           V+A   VWH RLGHP+  V+Q L + K +Q               LGKSSRLPF+ S   
Sbjct: 442 VKATDEVWHMRLGHPNPQVLQLLANKKAIQINKSTSKMCESCR--LGKSSRLPFIASDFI 499

Query: 79  SIKPLQIVHIDLWGPSPVNSISGFRF 2
           + +PL+ VH DLWGP+PV+SI GF++
Sbjct: 500 ASRPLERVHCDLWGPAPVSSIQGFQY 525


>gb|AAC67200.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1402

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 38/80 (47%), Positives = 48/80 (60%)
 Frame = -3

Query: 241 VWHKRLGHPSKAVVQYLVHDKKLQXXXXXXXXXXXXXXSLGKSSRLPFLLSSCRSIKPLQ 62
           VWH+RLGHP   V+Q LV    +                LGKS+RLPF+ SS  S +PL+
Sbjct: 466 VWHRRLGHPHPQVLQQLVKTNSISINKTSKSLCEACQ--LGKSTRLPFVSSSFTSNRPLE 523

Query: 61  IVHIDLWGPSPVNSISGFRF 2
            VH DLWGPSP+ S+ GFR+
Sbjct: 524 RVHCDLWGPSPITSVQGFRY 543


>emb|CAN65591.1| hypothetical protein VITISV_042091 [Vitis vinifera]
          Length = 1427

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 38/92 (41%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
 Frame = -3

Query: 274 KALLGVRAPLSVWHKRLGHPSKAVVQYLVHDKKLQXXXXXXXXXXXXXXSL-GKSSRLPF 98
           +A + V+  L+ WH RLGHPS  + Q+L+    LQ               L  KS +LPF
Sbjct: 439 QACVSVKTSLANWHHRLGHPSSRIFQFLIRKHNLQIYPTESFHNFFCESCLCNKSHKLPF 498

Query: 97  LLSSCRSIKPLQIVHIDLWGPSPVNSISGFRF 2
            +SS RS   L +V+ D+WGPSP+ SI GFR+
Sbjct: 499 GVSSLRSRGXLDLVYSDVWGPSPIESIDGFRY 530


>gb|AAF02855.1|AC009324_4 Similar to retrotransposon proteins [Arabidopsis thaliana]
          Length = 1522

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 35/84 (41%), Positives = 49/84 (58%)
 Frame = -3

Query: 253 APLSVWHKRLGHPSKAVVQYLVHDKKLQXXXXXXXXXXXXXXSLGKSSRLPFLLSSCRSI 74
           A   VWH+RLGH +  V+  L   K +                LGKS+RLPF+LS+  + 
Sbjct: 455 ASSEVWHRRLGHANAEVLHQLASSKSI-IIINKVVKTVCEACHLGKSTRLPFMLSTFNAS 513

Query: 73  KPLQIVHIDLWGPSPVNSISGFRF 2
           +PL+ +H DLWGPSP +S+ GFR+
Sbjct: 514 RPLERIHCDLWGPSPTSSVQGFRY 537