BLASTX nr result

ID: Cimicifuga21_contig00018908 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00018908
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267156.1| PREDICTED: COP9 signalosome complex subunit ...    65   6e-09
ref|XP_002529210.1| signalosome subunit, putative [Ricinus commu...    65   6e-09
ref|XP_002330530.1| predicted protein [Populus trichocarpa] gi|2...    65   6e-09
gb|ABK95254.1| unknown [Populus trichocarpa]                           65   6e-09
ref|XP_003527566.1| PREDICTED: COP9 signalosome complex subunit ...    64   1e-08

>ref|XP_002267156.1| PREDICTED: COP9 signalosome complex subunit 6a [Vitis vinifera]
           gi|296090054|emb|CBI39873.3| unnamed protein product
           [Vitis vinifera]
          Length = 317

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = -3

Query: 338 MITNCASTMNELVDKFNVAYDRHSRRGGRAAFI 240
           M TNC+STMNELVDKFN AYDRHSRRGGR AFI
Sbjct: 285 MFTNCSSTMNELVDKFNTAYDRHSRRGGRTAFI 317


>ref|XP_002529210.1| signalosome subunit, putative [Ricinus communis]
           gi|223531328|gb|EEF33166.1| signalosome subunit,
           putative [Ricinus communis]
          Length = 318

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = -3

Query: 338 MITNCASTMNELVDKFNVAYDRHSRRGGRAAFI 240
           M TNC+STMNELVDKFN AYDRHSRRGGR AFI
Sbjct: 286 MFTNCSSTMNELVDKFNTAYDRHSRRGGRTAFI 318


>ref|XP_002330530.1| predicted protein [Populus trichocarpa] gi|222872088|gb|EEF09219.1|
           predicted protein [Populus trichocarpa]
          Length = 306

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = -3

Query: 338 MITNCASTMNELVDKFNVAYDRHSRRGGRAAFI 240
           M TNC+STMNELVDKFN AYDRHSRRGGR AFI
Sbjct: 274 MFTNCSSTMNELVDKFNTAYDRHSRRGGRTAFI 306


>gb|ABK95254.1| unknown [Populus trichocarpa]
          Length = 194

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 29/33 (87%), Positives = 30/33 (90%)
 Frame = -3

Query: 338 MITNCASTMNELVDKFNVAYDRHSRRGGRAAFI 240
           M TNC+STMNELVDKFN AYDRHSRRGGR AFI
Sbjct: 162 MFTNCSSTMNELVDKFNTAYDRHSRRGGRTAFI 194


>ref|XP_003527566.1| PREDICTED: COP9 signalosome complex subunit 6a-like [Glycine max]
          Length = 322

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 27/33 (81%), Positives = 32/33 (96%)
 Frame = -3

Query: 338 MITNCASTMNELVDKFNVAYDRHSRRGGRAAFI 240
           M+TNC+S+MNELVDKFN+AYDRHSRRGGR AF+
Sbjct: 290 MLTNCSSSMNELVDKFNIAYDRHSRRGGRTAFM 322


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