BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00018629
         (1767 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI16283.3| unnamed protein product [Vitis vinifera]              694   0.0  
ref|XP_002284994.1| PREDICTED: general transcription factor IIH ...   692   0.0  
ref|XP_004143721.1| PREDICTED: general transcription factor IIH ...   648   0.0  
ref|XP_003554116.1| PREDICTED: general transcription factor IIH ...   644   0.0  
ref|XP_003624959.1| General transcription factor IIH subunit [Me...   640   0.0  

>emb|CBI16283.3| unnamed protein product [Vitis vinifera]
          Length = 494

 Score =  694 bits (1791), Expect = 0.0
 Identities = 327/433 (75%), Positives = 366/433 (84%)
 Frame = -3

Query: 1534 IAVSYQSMSHRNANSAXXXXXXXXXXXXXXXXXXXXDKGMEAWERAYADERSWESLQEDE 1355
            I  S   M HR  N                       +G++AWERAYADERSWESLQEDE
Sbjct: 58   IYTSMNDMEHRKTNDGEGRRLDGEEEEEEEDEDEGNGRGLDAWERAYADERSWESLQEDE 117

Query: 1354 SGLLRPIDNNSLHHAQYXXXXXXXXXXXXXXXIQKGLIRYLYILIDFSRAAAEMDFRPSR 1175
            SGLLRPIDN +++HAQY               IQKGLIRYLYI++D SRAA+EMDF+PSR
Sbjct: 118  SGLLRPIDNKTIYHAQYRRRIRSLYSSTTTARIQKGLIRYLYIVVDLSRAASEMDFKPSR 177

Query: 1174 MVVVAKHVEAFIREFFDQNPLSHIGIIILKDGVAHCLTDLGGSPDSHIKALTGKLQSSGD 995
            M VVAKH+EAFIREFFDQNPLS IG++ +KDG+A CLTDLGGSPDSH+KAL GKL+ SGD
Sbjct: 178  MAVVAKHIEAFIREFFDQNPLSQIGLVTIKDGLAQCLTDLGGSPDSHVKALMGKLECSGD 237

Query: 994  SSLQNALELVHGFLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKKAKIRCSVVGLS 815
            SSLQNAL+LVHG+LNQIPSYGHREVLILYSALSTCDPGDIMETIQ+CKK+KIRCSV+GLS
Sbjct: 238  SSLQNALDLVHGYLNQIPSYGHREVLILYSALSTCDPGDIMETIQECKKSKIRCSVIGLS 297

Query: 814  AEIYICKHLCQETGGSYTVALDESHFKELVLEHAPPPPAIAEFAVSNLIKMGFPQRAAEG 635
            AEI+IC+HLCQETGGSY+VALDESHFKEL+LEHAPPPPAIAEFA++NLIKMGFPQRAAEG
Sbjct: 298  AEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPPAIAEFAIANLIKMGFPQRAAEG 357

Query: 634  VISICACHKEAKVGGGYTCPRCKARVCELPTECQICGLTLVSSPHLARSYHHLFPITPFN 455
            VISIC+CHKEAKVGGGYTCPRCKARVCELPTEC+ICGLTLVSSPHLARSYHHLFPI PF+
Sbjct: 358  VISICSCHKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIPPFD 417

Query: 454  EVSSTILNNTHHKLPRACFGCQQTLPLPGKKPSMRVACPKCNQHFCLDCDIYIHESLHNC 275
            EVS ++LNN H +  RACFGCQ++L +PG KP++ VACPKC QHFCLDCDIYIHESLHNC
Sbjct: 418  EVSLSLLNNPHQRSSRACFGCQESLLIPGNKPTLCVACPKCKQHFCLDCDIYIHESLHNC 477

Query: 274  PGCESLPHSKSVS 236
            PGCES  HSK VS
Sbjct: 478  PGCESFRHSKIVS 490


>ref|XP_002284994.1| PREDICTED: general transcription factor IIH subunit 2 [Vitis
            vinifera]
          Length = 433

 Score =  692 bits (1786), Expect = 0.0
 Identities = 325/426 (76%), Positives = 364/426 (85%)
 Frame = -3

Query: 1513 MSHRNANSAXXXXXXXXXXXXXXXXXXXXDKGMEAWERAYADERSWESLQEDESGLLRPI 1334
            M HR  N                       +G++AWERAYADERSWESLQEDESGLLRPI
Sbjct: 4    MEHRKTNDGEGRRLDGEEEEEEEDEDEGNGRGLDAWERAYADERSWESLQEDESGLLRPI 63

Query: 1333 DNNSLHHAQYXXXXXXXXXXXXXXXIQKGLIRYLYILIDFSRAAAEMDFRPSRMVVVAKH 1154
            DN +++HAQY               IQKGLIRYLYI++D SRAA+EMDF+PSRM VVAKH
Sbjct: 64   DNKTIYHAQYRRRIRSLYSSTTTARIQKGLIRYLYIVVDLSRAASEMDFKPSRMAVVAKH 123

Query: 1153 VEAFIREFFDQNPLSHIGIIILKDGVAHCLTDLGGSPDSHIKALTGKLQSSGDSSLQNAL 974
            +EAFIREFFDQNPLS IG++ +KDG+A CLTDLGGSPDSH+KAL GKL+ SGDSSLQNAL
Sbjct: 124  IEAFIREFFDQNPLSQIGLVTIKDGLAQCLTDLGGSPDSHVKALMGKLECSGDSSLQNAL 183

Query: 973  ELVHGFLNQIPSYGHREVLILYSALSTCDPGDIMETIQKCKKAKIRCSVVGLSAEIYICK 794
            +LVHG+LNQIPSYGHREVLILYSALSTCDPGDIMETIQ+CKK+KIRCSV+GLSAEI+IC+
Sbjct: 184  DLVHGYLNQIPSYGHREVLILYSALSTCDPGDIMETIQECKKSKIRCSVIGLSAEIFICR 243

Query: 793  HLCQETGGSYTVALDESHFKELVLEHAPPPPAIAEFAVSNLIKMGFPQRAAEGVISICAC 614
            HLCQETGGSY+VALDESHFKEL+LEHAPPPPAIAEFA++NLIKMGFPQRAAEGVISIC+C
Sbjct: 244  HLCQETGGSYSVALDESHFKELLLEHAPPPPAIAEFAIANLIKMGFPQRAAEGVISICSC 303

Query: 613  HKEAKVGGGYTCPRCKARVCELPTECQICGLTLVSSPHLARSYHHLFPITPFNEVSSTIL 434
            HKEAKVGGGYTCPRCKARVCELPTEC+ICGLTLVSSPHLARSYHHLFPI PF+EVS ++L
Sbjct: 304  HKEAKVGGGYTCPRCKARVCELPTECRICGLTLVSSPHLARSYHHLFPIPPFDEVSLSLL 363

Query: 433  NNTHHKLPRACFGCQQTLPLPGKKPSMRVACPKCNQHFCLDCDIYIHESLHNCPGCESLP 254
            NN H +  RACFGCQ++L +PG KP++ VACPKC QHFCLDCDIYIHESLHNCPGCES  
Sbjct: 364  NNPHQRSSRACFGCQESLLIPGNKPTLCVACPKCKQHFCLDCDIYIHESLHNCPGCESFR 423

Query: 253  HSKSVS 236
            HSK VS
Sbjct: 424  HSKIVS 429


>ref|XP_004143721.1| PREDICTED: general transcription factor IIH subunit 2-like [Cucumis
            sativus]
          Length = 423

 Score =  648 bits (1672), Expect = 0.0
 Identities = 298/394 (75%), Positives = 344/394 (87%), Gaps = 2/394 (0%)
 Frame = -3

Query: 1420 GMEAWERAYADERSWESLQEDESGLLRPIDNNSLHHAQYXXXXXXXXXXXXXXXIQKGLI 1241
            G+ AWER YAD+RSWE+LQEDESGLLRPIDN +++HAQY               IQKGLI
Sbjct: 24   GLAAWERTYADDRSWEALQEDESGLLRPIDNKAIYHAQYRRRLRTLSSLATTARIQKGLI 83

Query: 1240 RYLYILIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHIGIIILKDGVAHCLT 1061
            RYLYI+IDFS+AA EMDFRPSRM VVAKHV+AF+REFFDQNPLS IG++ +KDG A+CLT
Sbjct: 84   RYLYIVIDFSKAATEMDFRPSRMAVVAKHVDAFVREFFDQNPLSQIGLVTIKDGFANCLT 143

Query: 1060 DLGGSPDSHIKALTGKLQSSGDSSLQNALELVHGFLNQIPSYGHREVLILYSALSTCDPG 881
            DLGGSP+SH+KAL GKL+ SGD+SLQN LELVH +LNQIPSYGHREVL+LYSAL++CDPG
Sbjct: 144  DLGGSPESHVKALMGKLECSGDASLQNGLELVHSYLNQIPSYGHREVLVLYSALNSCDPG 203

Query: 880  DIMETIQKCKKAKIRCSVVGLSAEIYICKHLCQETGGSYTVALDESHFKELVLEHAPPPP 701
            DIMET+QKCK +KIRCSV+GL+AEI+IC+HLCQETGGSY+VALDESHFKEL+LEHAPPPP
Sbjct: 204  DIMETVQKCKTSKIRCSVIGLTAEIFICRHLCQETGGSYSVALDESHFKELLLEHAPPPP 263

Query: 700  AIAEFAVSNLIKMGFPQRAAEGVISICACHKEAKVGGGYTCPRCKARVCELPTECQICGL 521
            AIA+ A+ NLIKMGFPQRAAE  I+IC+CHKEAKVGGGYTCPRCKARVCELPTEC+ICGL
Sbjct: 264  AIADSAMPNLIKMGFPQRAAESSIAICSCHKEAKVGGGYTCPRCKARVCELPTECRICGL 323

Query: 520  TLVSSPHLARSYHHLFPITPFNEVSSTILNNTHHKLPRACFGCQQTL--PLPGKKPSMRV 347
            TL+SSPHLARSYHHLFPI PF+EVS  + ++  H+LP+ CFGCQ++L  P  G  PS+RV
Sbjct: 324  TLISSPHLARSYHHLFPIIPFDEVSDKVFHDPRHQLPKVCFGCQESLMNPSTGNSPSIRV 383

Query: 346  ACPKCNQHFCLDCDIYIHESLHNCPGCESLPHSK 245
            +CPKC QHFCLDCDIYIHESLHNCPGCES    K
Sbjct: 384  SCPKCKQHFCLDCDIYIHESLHNCPGCESFRRPK 417


>ref|XP_003554116.1| PREDICTED: general transcription factor IIH subunit 2-like [Glycine
            max]
          Length = 420

 Score =  644 bits (1660), Expect = 0.0
 Identities = 291/395 (73%), Positives = 343/395 (86%)
 Frame = -3

Query: 1420 GMEAWERAYADERSWESLQEDESGLLRPIDNNSLHHAQYXXXXXXXXXXXXXXXIQKGLI 1241
            G+EAWER YA++RSWE+LQEDESGLLRPID  +++HAQY               IQKGLI
Sbjct: 23   GLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRTLAATAATARIQKGLI 82

Query: 1240 RYLYILIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHIGIIILKDGVAHCLT 1061
            RYLYI++D S+AA+E DFRPSRM V+ K VEAFIREFFDQNPLSH+G++ +KDG+AHC+T
Sbjct: 83   RYLYIVVDLSKAASERDFRPSRMAVMGKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCIT 142

Query: 1060 DLGGSPDSHIKALTGKLQSSGDSSLQNALELVHGFLNQIPSYGHREVLILYSALSTCDPG 881
            +LGGSP+SHIKAL GKL+ SGD+SLQNALELV G+LNQIPSYGHREVLILYSALSTCDPG
Sbjct: 143  ELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPG 202

Query: 880  DIMETIQKCKKAKIRCSVVGLSAEIYICKHLCQETGGSYTVALDESHFKELVLEHAPPPP 701
            D+METIQKCKK+KIRCSV+GL+AE+++CKHLCQETGG+Y+VALDESHFKEL+LEHAPPPP
Sbjct: 203  DLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPP 262

Query: 700  AIAEFAVSNLIKMGFPQRAAEGVISICACHKEAKVGGGYTCPRCKARVCELPTECQICGL 521
            AIAE+A +NLIKMGFPQR+AEG ++IC CH+EAK GGGYTCPRCK RVCELPTEC++CGL
Sbjct: 263  AIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGL 322

Query: 520  TLVSSPHLARSYHHLFPITPFNEVSSTILNNTHHKLPRACFGCQQTLPLPGKKPSMRVAC 341
            TL+SSPHLARSYHHLFPI  F+EV+ +  N+++H  P  CFGCQQ+L   G KP + V C
Sbjct: 323  TLISSPHLARSYHHLFPIVMFDEVTPSSQNDSNHSFPNTCFGCQQSLLSQGNKPGLSVIC 382

Query: 340  PKCNQHFCLDCDIYIHESLHNCPGCESLPHSKSVS 236
            PKC Q FCLDCDIY+HESLHNCPGCES  HSKSV+
Sbjct: 383  PKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVT 417


>ref|XP_003624959.1| General transcription factor IIH subunit [Medicago truncatula]
            gi|355499974|gb|AES81177.1| General transcription factor
            IIH subunit [Medicago truncatula]
          Length = 426

 Score =  640 bits (1652), Expect = 0.0
 Identities = 296/399 (74%), Positives = 340/399 (85%), Gaps = 4/399 (1%)
 Frame = -3

Query: 1420 GMEAWERAYADERSWESLQEDESGLLRPIDNNSLHHAQYXXXXXXXXXXXXXXXIQKGLI 1241
            G+EAWERAY ++RSWESLQEDESGLLRPID  ++HHAQY               IQKGLI
Sbjct: 25   GLEAWERAYTEDRSWESLQEDESGLLRPIDTTAIHHAQYRRRLRALASNAATARIQKGLI 84

Query: 1240 RYLYILIDFSRAAAEMDFRPSRMVVVAKHVEAFIREFFDQNPLSHIGIIILKDGVAHCLT 1061
            RYLYI++D S+AA+E DFRPSRM V+AK VE FIREFFDQNPLSH+G++  KDGVA+CLT
Sbjct: 85   RYLYIVVDLSKAASERDFRPSRMAVIAKQVELFIREFFDQNPLSHVGLVTTKDGVANCLT 144

Query: 1060 DLGGSPDSHIKALTGKLQSSGDSSLQNALELVHGFLNQIPSYGHREVLILYSALSTCDPG 881
            DLGGSP+SHIKAL GKL+ SGD+SLQNALELVH  LNQIPSYGHREVLILYSALSTCDPG
Sbjct: 145  DLGGSPESHIKALMGKLECSGDASLQNALELVHSNLNQIPSYGHREVLILYSALSTCDPG 204

Query: 880  DIMETIQKCKKAKIRCSVVGLSAEIYICKHLCQETGGSYTVALDESHFKELVLEHAPPPP 701
            D+METIQKCKK+KIRCSV+GL+AE++ICKHLCQETGG+Y+VALDESHFKEL+LEH+PPPP
Sbjct: 205  DLMETIQKCKKSKIRCSVIGLAAEMFICKHLCQETGGTYSVALDESHFKELILEHSPPPP 264

Query: 700  AIAEFAVSNLIKMGFPQRAAEGVISICACHKEAKVGGGYTCPRCKARVCELPTECQICGL 521
            AIAE+A +NLIKMGFPQRAAEG ++IC CH+EAK GGGYTCPRCK RVCELPTEC++CGL
Sbjct: 265  AIAEYATANLIKMGFPQRAAEGSVAICTCHEEAKTGGGYTCPRCKVRVCELPTECRVCGL 324

Query: 520  TLVSSPHLARSYHHLFPITPFNEVSSTILNNTHHKLPRACFGCQQTLPL----PGKKPSM 353
            TL+SSPHLARSYHHLFPI PF E+S +  N+ +H  P  CFGCQQ+L       G K  +
Sbjct: 325  TLISSPHLARSYHHLFPIVPFAEISPSSQNDPNHSFPNTCFGCQQSLLSQGFGAGNKAEL 384

Query: 352  RVACPKCNQHFCLDCDIYIHESLHNCPGCESLPHSKSVS 236
             V+CPKC Q FCLDCD+YIHESLHNCPGCES  HSKSV+
Sbjct: 385  SVSCPKCKQQFCLDCDMYIHESLHNCPGCESFRHSKSVT 423