BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00018368
         (484 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519056.1| rnf5, putative [Ricinus communis] gi|2235417...    82   3e-14
ref|XP_002262822.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...    77   1e-12
gb|AEC04825.1| ubiquitin ligase protein [Vitis pseudoreticulata]       75   5e-12
ref|XP_003543049.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...    73   2e-11
ref|XP_003545948.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H...    73   3e-11

>ref|XP_002519056.1| rnf5, putative [Ricinus communis] gi|223541719|gb|EEF43267.1| rnf5,
           putative [Ricinus communis]
          Length = 241

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 48/114 (42%), Positives = 62/114 (54%), Gaps = 4/114 (3%)
 Frame = -3

Query: 359 FQSDQRQQLYSASSSPVFNLGGPTT----HPMVWMFGEMVHARVFGNSEEVNLIGYPNSY 192
           +  D       AS SP+ NLGG       HP V MFGEMV+ARVFGNS+  +L  Y NSY
Sbjct: 145 YTPDPYSSFEEASQSPLLNLGGSAVTGFHHPFVGMFGEMVYARVFGNSD--SLYAYRNSY 202

Query: 191 HHLTSISPSVRRQEMKTEKSLNRXXXXXXXXXXXXXXXX*MYPFYFCFIICVLV 30
           H + S SP +RRQEM+ +KSLNR                     + CF++C++V
Sbjct: 203 HLMGSNSPRLRRQEMQADKSLNRISIF----------------LFCCFLLCLIV 240


>ref|XP_002262822.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1 isoform 1 [Vitis
           vinifera] gi|359497380|ref|XP_003635497.1| PREDICTED: E3
           ubiquitin-protein ligase RMA1H1 isoform 2 [Vitis
           vinifera] gi|359497382|ref|XP_003635498.1| PREDICTED: E3
           ubiquitin-protein ligase RMA1H1 isoform 3 [Vitis
           vinifera] gi|147810574|emb|CAN63097.1| hypothetical
           protein VITISV_013326 [Vitis vinifera]
          Length = 240

 Score = 77.4 bits (189), Expect = 1e-12
 Identities = 57/143 (39%), Positives = 66/143 (46%), Gaps = 23/143 (16%)
 Frame = -3

Query: 482 LVPLYGRGDFSSEPNSKDSMEIXXXXXXXXXXXXXXXXXXQFQSDQRQQLYSA------- 324
           LVPLYGRG   SE   +                          S   QQL          
Sbjct: 85  LVPLYGRGQTPSETELEGKTHCFGMAIPPRPPACGTQALINATSHNGQQLQYRNPYQNQQ 144

Query: 323 ------------SSSPVFNLGGPTT----HPMVWMFGEMVHARVFGNSEEVNLIGYPNSY 192
                       S S +FN+GG T     HP V MFGEMV+ARVFGNSE  +L  YPNSY
Sbjct: 145 YDPHPYNDYEHDSPSSLFNMGGSTATSFFHP-VGMFGEMVYARVFGNSE--SLYAYPNSY 201

Query: 191 HHLTSISPSVRRQEMKTEKSLNR 123
           H   S +P +RRQEM+ +KSLNR
Sbjct: 202 HLTGSSTPRLRRQEMQADKSLNR 224


>gb|AEC04825.1| ubiquitin ligase protein [Vitis pseudoreticulata]
          Length = 240

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 56/143 (39%), Positives = 65/143 (45%), Gaps = 23/143 (16%)
 Frame = -3

Query: 482 LVPLYGRGDFSSEPNSKDSMEIXXXXXXXXXXXXXXXXXXQFQSDQRQQLYSA------- 324
           LVPLYGRG   SE   +                          S   QQL          
Sbjct: 85  LVPLYGRGQTPSETELEGKTHCFGMAIPPRPPACGTQALINATSHNGQQLQYRNPYQNQQ 144

Query: 323 ------------SSSPVFNLGGPTT----HPMVWMFGEMVHARVFGNSEEVNLIGYPNSY 192
                       S S +FN+GG T     HP V MFGEMV+ARVFGNSE  +L  YPNSY
Sbjct: 145 YDPHPYNDYEHDSPSSLFNMGGSTATSFFHP-VGMFGEMVYARVFGNSE--SLYAYPNSY 201

Query: 191 HHLTSISPSVRRQEMKTEKSLNR 123
           H   S +P +R QEM+ +KSLNR
Sbjct: 202 HLTGSSTPRLRTQEMQADKSLNR 224


>ref|XP_003543049.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max]
          Length = 232

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 42/98 (42%), Positives = 56/98 (57%)
 Frame = -3

Query: 323 SSSPVFNLGGPTTHPMVWMFGEMVHARVFGNSEEVNLIGYPNSYHHLTSISPSVRRQEMK 144
           ++S + NLG    HP+  MFGEMV+ARVFGN E  NL  YPNSY  + S +P +RRQEM+
Sbjct: 153 ATSQMLNLGSHH-HPVTGMFGEMVYARVFGNPE--NLYAYPNSYQLMGSATPRLRRQEMQ 209

Query: 143 TEKSLNRXXXXXXXXXXXXXXXX*MYPFYFCFIICVLV 30
             KSLNR                     + CF++C++V
Sbjct: 210 AHKSLNRISIF----------------LFCCFLLCLIV 231


>ref|XP_003545948.1| PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Glycine max]
          Length = 232

 Score = 72.8 bits (177), Expect = 3e-11
 Identities = 42/98 (42%), Positives = 56/98 (57%)
 Frame = -3

Query: 323 SSSPVFNLGGPTTHPMVWMFGEMVHARVFGNSEEVNLIGYPNSYHHLTSISPSVRRQEMK 144
           ++S + NLG    HP+  MFGEMV+ARVFGN E  NL  YPNSY  + S +P +RRQEM+
Sbjct: 153 ATSQMLNLGSHH-HPVTGMFGEMVYARVFGNPE--NLYAYPNSYQLMGSATPRLRRQEMQ 209

Query: 143 TEKSLNRXXXXXXXXXXXXXXXX*MYPFYFCFIICVLV 30
             KSLNR                     + CF++C++V
Sbjct: 210 AHKSLNRISIF----------------LFCCFLLCLVV 231