BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00018336
         (337 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511313.1| pentatricopeptide repeat-containing protein,...    88   8e-16
ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containi...    82   4e-14
ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containi...    80   1e-13
ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containi...    78   6e-13
ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containi...    74   2e-11

>ref|XP_002511313.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550428|gb|EEF51915.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 627

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 49/103 (47%), Positives = 72/103 (69%), Gaps = 2/103 (1%)
 Frame = -3

Query: 305 MKTAKRILDSLRPAKPFLLTRISN-RFQVTEYSHISP-FLSSSVQKQAYNYNFLNTHQKL 132
           M  A+ IL SLR +   L TRIS  R  +T+ +H  P FLS   ++ +Y  +++N H+KL
Sbjct: 1   MNRARTILVSLRLSNFLLSTRISTTRPFLTQVTHFFPCFLS---REHSYTSDYVNIHKKL 57

Query: 131 YFSSRPSSIIEVVTTNEWSEDLEKELEKSHPTLTHESVLYVLK 3
           Y SS+PSS++E+++ N+WS +LE +LE S P LTHE+V+YVLK
Sbjct: 58  YSSSKPSSLVELLSVNDWSPELETQLENSSPLLTHETVIYVLK 100


>ref|XP_002277390.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Vitis vinifera]
          Length = 631

 Score = 82.0 bits (201), Expect = 4e-14
 Identities = 47/105 (44%), Positives = 64/105 (60%), Gaps = 4/105 (3%)
 Frame = -3

Query: 305 MKTAKRILDSLRPAKPFLLTRISNR----FQVTEYSHISPFLSSSVQKQAYNYNFLNTHQ 138
           M  AK IL S+R    F  T+        +QVT+ S  SP  S+     A+ Y     + 
Sbjct: 1   MNRAKAILFSIRFTNSFRSTQFRRASSLCYQVTQSSRFSPSFSNQSYTSAFPYIL---YG 57

Query: 137 KLYFSSRPSSIIEVVTTNEWSEDLEKELEKSHPTLTHESVLYVLK 3
           KL+FSS+P+SI+E+V  N+WS++LE ELEKS   LTHE+V+YVLK
Sbjct: 58  KLFFSSKPNSIVELVLENDWSDELESELEKSSSVLTHETVIYVLK 102


>ref|XP_003549820.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 44/108 (40%), Positives = 71/108 (65%), Gaps = 7/108 (6%)
 Frame = -3

Query: 305 MKTAKRILDSLRPAKPFLLTRIS-------NRFQVTEYSHISPFLSSSVQKQAYNYNFLN 147
           M   + I+ +LR  +  L +R++        R QVT +S  +P   S +   ++++   N
Sbjct: 1   MNRLRAIVVNLRFLESPLASRVTATRSLLLTRNQVTHFSLCTP---SPLLDNSHHFLLPN 57

Query: 146 THQKLYFSSRPSSIIEVVTTNEWSEDLEKELEKSHPTLTHESVLYVLK 3
            HQ LYFSS+P+SI+E+V T++WS+ LE+ELEK +P++THE+V+YVLK
Sbjct: 58  IHQNLYFSSKPNSIVELVLTSDWSKGLEQELEKCYPSMTHETVVYVLK 105


>ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
           gi|449524136|ref|XP_004169079.1| PREDICTED:
           pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Cucumis sativus]
          Length = 632

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 48/101 (47%), Positives = 61/101 (60%)
 Frame = -3

Query: 305 MKTAKRILDSLRPAKPFLLTRISNRFQVTEYSHISPFLSSSVQKQAYNYNFLNTHQKLYF 126
           M     I  SLR A  F  TR S   QVT +S      SS V  Q+   +F   H  L+F
Sbjct: 1   MTRRNAIFTSLRLANSFFSTR-SRYPQVTRFSP-----SSYVSHQSLVSHFTINHPVLFF 54

Query: 125 SSRPSSIIEVVTTNEWSEDLEKELEKSHPTLTHESVLYVLK 3
           SS P S++++V+TN+WSE LE ELE  +PTLTHE+V+YVLK
Sbjct: 55  SSNPQSLLQLVSTNDWSEMLETELETLNPTLTHETVVYVLK 95


>ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
           chloroplastic-like [Glycine max]
          Length = 635

 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 43/104 (41%), Positives = 65/104 (62%), Gaps = 3/104 (2%)
 Frame = -3

Query: 305 MKTAKRILDSLRPAKPFLLTRIS-NRFQVTEYSHISPFLSSSVQKQAYNYNFLNTHQKLY 129
           M   K I  SLR  +  L TR+   R QVT +S  +P     +  ++++  F  TH KLY
Sbjct: 1   MNRVKAIASSLRTLESSLATRVLVTRNQVTHFSLHNPL---PLFDRSHHLRFPITHHKLY 57

Query: 128 FSSRP--SSIIEVVTTNEWSEDLEKELEKSHPTLTHESVLYVLK 3
           FS++P  +SI+E++ TN+WS+ LE +LE   P++ HE+VLYV+K
Sbjct: 58  FSTKPKPNSIVELLLTNDWSQALELKLENRFPSMPHETVLYVIK 101