BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00018334
         (688 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_187803.4| RNA binding protein [Arabidopsis thaliana] gi|3...   100   1e-42
dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis th...   100   1e-42
gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, ...   100   1e-42
ref|XP_002276633.2| PREDICTED: protein RRP5 homolog [Vitis vinif...   105   1e-42
emb|CBI29966.3| unnamed protein product [Vitis vinifera]              105   1e-42

>ref|NP_187803.4| RNA binding protein [Arabidopsis thaliana]
            gi|332641610|gb|AEE75131.1| RNA binding protein
            [Arabidopsis thaliana]
          Length = 1896

 Score =  100 bits (249), Expect(2) = 1e-42
 Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 14/148 (9%)
 Frame = -3

Query: 650  RLHITEANDDHVEDPFRKFRVGQMLTTRIVEKVDQSKKNSKYQWELSTKSAV---LSGNF 480
            R+H TE ND  V DP   FR GQ +  +++E    SK    +Q ELS ++++    S + 
Sbjct: 1264 RVHFTEINDSWVPDPLDGFREGQFVKCKVLEISSSSK--GTWQIELSLRTSLDGMSSADH 1321

Query: 479  LAHDLKRSRSFRKM*LFRVT-----------LRMLCQKGCFIMLSRRVEAKVLLSNLSNG 333
            L+ DLK + +  K    R+            ++    KGCFI+LSR VEAKV LSNL + 
Sbjct: 1322 LSEDLKNNDNVCKR-FERIEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDT 1380

Query: 332  FIETSEKEFPVGKLVQGKVLSVEPMSKR 249
            F++  EKEFPVGKLV G+VL+VEP+SKR
Sbjct: 1381 FVKEPEKEFPVGKLVTGRVLNVEPLSKR 1408



 Score = 99.4 bits (246), Expect(2) = 1e-42
 Identities = 45/83 (54%), Positives = 64/83 (77%)
 Frame = -1

Query: 250  EVTLKTEVTGNKSKFERRDYSSLRVGEVISGRIKRIESFGLFVTVEHTNMVGLCHVSELS 71
            EVTLKT   G + K E  D   L VG++ISGRI+R+E FGLF+ ++ T MVGLCH+S+LS
Sbjct: 1410 EVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLS 1469

Query: 70   DNPVDNIESQYRVGETVVAKILK 2
            D+ ++N++++Y+ GE+V AKILK
Sbjct: 1470 DDRMENVQARYKAGESVRAKILK 1492



 Score = 58.9 bits (141), Expect = 9e-07
 Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
 Frame = -3

Query: 650  RLHITEA--NDDHVED-PFRKFRVGQMLTTRIVEKVDQSKKNSKYQWELSTKSAVLSGNF 480
            R+HITE   ND    D PF KFRVGQ ++ R+V K   +       WELS K A+L  + 
Sbjct: 1054 RIHITEVLVNDASTSDEPFAKFRVGQSISARVVAKPCHTDIKKTQLWELSVKPAMLKDSS 1113

Query: 479  LAHDLKRSR--SFRKM*LFRVTLRMLCQKGCFIMLSRRVEAKVLLSNLS--NGFIETSEK 312
              +D + S    F         +  + ++  ++ +SR V A++ + + S     +E  E+
Sbjct: 1114 EFNDTQESEQLEFAAGQCVIGYVYKVDKEWVWLAVSRNVTARIFILDTSCKAHELEEFER 1173

Query: 311  EFPVGKLVQGKVLSVEPMSK 252
             FP+GK V G VL+     K
Sbjct: 1174 RFPIGKAVSGYVLTYNKEKK 1193


>dbj|BAB03107.1| pre-rRNA processing protein RRP5 [Arabidopsis thaliana]
          Length = 1765

 Score =  100 bits (249), Expect(2) = 1e-42
 Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 14/148 (9%)
 Frame = -3

Query: 650  RLHITEANDDHVEDPFRKFRVGQMLTTRIVEKVDQSKKNSKYQWELSTKSAV---LSGNF 480
            R+H TE ND  V DP   FR GQ +  +++E    SK    +Q ELS ++++    S + 
Sbjct: 1133 RVHFTEINDSWVPDPLDGFREGQFVKCKVLEISSSSK--GTWQIELSLRTSLDGMSSADH 1190

Query: 479  LAHDLKRSRSFRKM*LFRVT-----------LRMLCQKGCFIMLSRRVEAKVLLSNLSNG 333
            L+ DLK + +  K    R+            ++    KGCFI+LSR VEAKV LSNL + 
Sbjct: 1191 LSEDLKNNDNVCKR-FERIEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDT 1249

Query: 332  FIETSEKEFPVGKLVQGKVLSVEPMSKR 249
            F++  EKEFPVGKLV G+VL+VEP+SKR
Sbjct: 1250 FVKEPEKEFPVGKLVTGRVLNVEPLSKR 1277



 Score = 99.4 bits (246), Expect(2) = 1e-42
 Identities = 45/83 (54%), Positives = 64/83 (77%)
 Frame = -1

Query: 250  EVTLKTEVTGNKSKFERRDYSSLRVGEVISGRIKRIESFGLFVTVEHTNMVGLCHVSELS 71
            EVTLKT   G + K E  D   L VG++ISGRI+R+E FGLF+ ++ T MVGLCH+S+LS
Sbjct: 1279 EVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLS 1338

Query: 70   DNPVDNIESQYRVGETVVAKILK 2
            D+ ++N++++Y+ GE+V AKILK
Sbjct: 1339 DDRMENVQARYKAGESVRAKILK 1361


>gb|AAF23213.1|AC016795_26 putative pre-rRNA processing protein, 5' partial [Arabidopsis
           thaliana]
          Length = 1111

 Score =  100 bits (249), Expect(2) = 1e-42
 Identities = 64/148 (43%), Positives = 88/148 (59%), Gaps = 14/148 (9%)
 Frame = -3

Query: 650 RLHITEANDDHVEDPFRKFRVGQMLTTRIVEKVDQSKKNSKYQWELSTKSAV---LSGNF 480
           R+H TE ND  V DP   FR GQ +  +++E    SK    +Q ELS ++++    S + 
Sbjct: 479 RVHFTEINDSWVPDPLDGFREGQFVKCKVLEISSSSK--GTWQIELSLRTSLDGMSSADH 536

Query: 479 LAHDLKRSRSFRKM*LFRVT-----------LRMLCQKGCFIMLSRRVEAKVLLSNLSNG 333
           L+ DLK + +  K    R+            ++    KGCFI+LSR VEAKV LSNL + 
Sbjct: 537 LSEDLKNNDNVCKR-FERIEDLSPDMGVQGYVKNTMSKGCFIILSRTVEAKVRLSNLCDT 595

Query: 332 FIETSEKEFPVGKLVQGKVLSVEPMSKR 249
           F++  EKEFPVGKLV G+VL+VEP+SKR
Sbjct: 596 FVKEPEKEFPVGKLVTGRVLNVEPLSKR 623



 Score = 99.4 bits (246), Expect(2) = 1e-42
 Identities = 45/83 (54%), Positives = 64/83 (77%)
 Frame = -1

Query: 250 EVTLKTEVTGNKSKFERRDYSSLRVGEVISGRIKRIESFGLFVTVEHTNMVGLCHVSELS 71
           EVTLKT   G + K E  D   L VG++ISGRI+R+E FGLF+ ++ T MVGLCH+S+LS
Sbjct: 625 EVTLKTVNAGGRPKSESYDLKKLHVGDMISGRIRRVEPFGLFIDIDQTGMVGLCHISQLS 684

Query: 70  DNPVDNIESQYRVGETVVAKILK 2
           D+ ++N++++Y+ GE+V AKILK
Sbjct: 685 DDRMENVQARYKAGESVRAKILK 707


>ref|XP_002276633.2| PREDICTED: protein RRP5 homolog [Vitis vinifera]
          Length = 1879

 Score =  105 bits (261), Expect(2) = 1e-42
 Identities = 49/83 (59%), Positives = 65/83 (78%)
 Frame = -1

Query: 250  EVTLKTEVTGNKSKFERRDYSSLRVGEVISGRIKRIESFGLFVTVEHTNMVGLCHVSELS 71
            EVTLKT    +  K E  D+SS+ VG++I G IKR+ES+GLF+T++ TNMVGLCH+SELS
Sbjct: 1399 EVTLKTSSATSVQKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMVGLCHISELS 1458

Query: 70   DNPVDNIESQYRVGETVVAKILK 2
            D+ + NIE++Y+ GE V AKILK
Sbjct: 1459 DDHISNIETKYKAGERVAAKILK 1481



 Score = 94.4 bits (233), Expect(2) = 1e-42
 Identities = 51/145 (35%), Positives = 92/145 (63%)
 Frame = -3

Query: 683  MLLKXXXXXXGRLHITEANDDHVEDPFRKFRVGQMLTTRIVEKVDQSKKNSKYQWELSTK 504
            +L++      G++H TE  D  V DP   +  GQ +  +++E +  S+K + +  +LS  
Sbjct: 1255 LLVQIGPHLYGKVHFTELKDSWVSDPLSGYHEGQFVKCKVLE-IGHSEKGTVHV-DLSLW 1312

Query: 503  SAVLSGNFLAHDLKRSRSFRKM*LFRVTLRMLCQKGCFIMLSRRVEAKVLLSNLSNGFIE 324
            S++   +     +++  +     L +  ++ +  KGCFI+LSR+++A++LL+NLS+G++E
Sbjct: 1313 SSLNGMHSPNSRVEKIDNLHSDMLVQGYVKNVTSKGCFILLSRKLDARILLANLSDGYVE 1372

Query: 323  TSEKEFPVGKLVQGKVLSVEPMSKR 249
              E+EFP+GKLV G+VLSVEP+S+R
Sbjct: 1373 KPEREFPIGKLVSGRVLSVEPLSRR 1397



 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 54/151 (35%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
 Frame = -3

Query: 686  EMLLKXXXXXXGRLHITEANDDHV-EDPFRKFRVGQMLTTRIVEKVDQSKKNSK-YQWEL 513
            E+ LK      GR+HITE  D++V E+PF  FR+GQ ++ RIV K ++S+ N K +QWEL
Sbjct: 1046 ELRLKFGIGFHGRVHITEVCDENVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWEL 1105

Query: 512  STKSAVLSGNFLAHDLKRSRSFRKM*LFRVT--LRMLCQKGCFIMLSRRVEAKVLLSNLS 339
            S K  +L+G+    +      FR     RVT  +  +  +  ++ +SR ++A++ L + S
Sbjct: 1106 SIKPEMLTGSIEVENKLVDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTS 1165

Query: 338  --NGFIETSEKEFPVGKLVQGKVLSVEPMSK 252
                 ++  +K F VGK V G VLS     K
Sbjct: 1166 CEPNELQEFQKRFEVGKAVSGYVLSANKEKK 1196


>emb|CBI29966.3| unnamed protein product [Vitis vinifera]
          Length = 1862

 Score =  105 bits (261), Expect(2) = 1e-42
 Identities = 49/83 (59%), Positives = 65/83 (78%)
 Frame = -1

Query: 250  EVTLKTEVTGNKSKFERRDYSSLRVGEVISGRIKRIESFGLFVTVEHTNMVGLCHVSELS 71
            EVTLKT    +  K E  D+SS+ VG++I G IKR+ES+GLF+T++ TNMVGLCH+SELS
Sbjct: 1382 EVTLKTSSATSVQKSEVNDFSSILVGDIIFGTIKRVESYGLFITIDDTNMVGLCHISELS 1441

Query: 70   DNPVDNIESQYRVGETVVAKILK 2
            D+ + NIE++Y+ GE V AKILK
Sbjct: 1442 DDHISNIETKYKAGERVAAKILK 1464



 Score = 94.4 bits (233), Expect(2) = 1e-42
 Identities = 51/145 (35%), Positives = 92/145 (63%)
 Frame = -3

Query: 683  MLLKXXXXXXGRLHITEANDDHVEDPFRKFRVGQMLTTRIVEKVDQSKKNSKYQWELSTK 504
            +L++      G++H TE  D  V DP   +  GQ +  +++E +  S+K + +  +LS  
Sbjct: 1238 LLVQIGPHLYGKVHFTELKDSWVSDPLSGYHEGQFVKCKVLE-IGHSEKGTVHV-DLSLW 1295

Query: 503  SAVLSGNFLAHDLKRSRSFRKM*LFRVTLRMLCQKGCFIMLSRRVEAKVLLSNLSNGFIE 324
            S++   +     +++  +     L +  ++ +  KGCFI+LSR+++A++LL+NLS+G++E
Sbjct: 1296 SSLNGMHSPNSRVEKIDNLHSDMLVQGYVKNVTSKGCFILLSRKLDARILLANLSDGYVE 1355

Query: 323  TSEKEFPVGKLVQGKVLSVEPMSKR 249
              E+EFP+GKLV G+VLSVEP+S+R
Sbjct: 1356 KPEREFPIGKLVSGRVLSVEPLSRR 1380



 Score = 76.3 bits (186), Expect = 5e-12
 Identities = 54/151 (35%), Positives = 84/151 (55%), Gaps = 6/151 (3%)
 Frame = -3

Query: 686  EMLLKXXXXXXGRLHITEANDDHV-EDPFRKFRVGQMLTTRIVEKVDQSKKNSK-YQWEL 513
            E+ LK      GR+HITE  D++V E+PF  FR+GQ ++ RIV K ++S+ N K +QWEL
Sbjct: 1052 ELRLKFGIGFHGRVHITEVCDENVIENPFSNFRIGQTVSARIVAKANKSENNGKNHQWEL 1111

Query: 512  STKSAVLSGNFLAHDLKRSRSFRKM*LFRVT--LRMLCQKGCFIMLSRRVEAKVLLSNLS 339
            S K  +L+G+    +      FR     RVT  +  +  +  ++ +SR ++A++ L + S
Sbjct: 1112 SIKPEMLTGSIEVENKLVDAEFRISTGQRVTGYVYKVENEWIWLTISRHIKAQLFLLDTS 1171

Query: 338  --NGFIETSEKEFPVGKLVQGKVLSVEPMSK 252
                 ++  +K F VGK V G VLS     K
Sbjct: 1172 CEPNELQEFQKRFEVGKAVSGYVLSANKEKK 1202