BLASTX nr result
ID: Cimicifuga21_contig00018330
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00018330
(2161 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004134588.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 659 0.0
ref|XP_002305441.1| predicted protein [Populus trichocarpa] gi|2... 656 0.0
ref|XP_002279094.1| PREDICTED: DEAD-box ATP-dependent RNA helica... 654 0.0
ref|NP_193320.6| RNA helicase 1 [Arabidopsis thaliana] gi|334302... 603 e-170
ref|XP_002870205.1| hypothetical protein ARALYDRAFT_493299 [Arab... 600 e-169
>ref|XP_004134588.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
sativus] gi|449490565|ref|XP_004158642.1| PREDICTED:
DEAD-box ATP-dependent RNA helicase 1-like [Cucumis
sativus]
Length = 517
Score = 659 bits (1701), Expect = 0.0
Identities = 338/484 (69%), Positives = 390/484 (80%)
Frame = +2
Query: 59 EDQAQKSVPVLPWMRSPVDVNLIEDCSLKLLSGLDPRLEEALQRMGFSSLFPVQVAVWQE 238
+ Q +K +PVLPWMRSPVDV+LIE+C L++L LD RL+ ALQ MG SSLFPVQ+AVWQE
Sbjct: 3 DKQKRKRIPVLPWMRSPVDVSLIEECPLEILPMLDHRLKAALQNMGISSLFPVQLAVWQE 62
Query: 239 TIGPGSFERDLCINSPTGSGKTLAYALPIVQTLSTXXXXXXXXXXXXPTRDLALQVKEVF 418
IGPGSF+RDLCINSPTGSGKTLAYALPIVQ LS+ PTRDLALQVKEVF
Sbjct: 63 AIGPGSFDRDLCINSPTGSGKTLAYALPIVQMLSSRTVKCLRALVVLPTRDLALQVKEVF 122
Query: 419 AAIAPAVGLSVGLSVGQTSIVDEISELIKRPKLEAGVCFDPEDRVADLQSSVDILVATPG 598
+AIAPAVGLSVGL+VGQ+SI DEISELIKRPKLEAG+C+DP+D + +LQSSVDILVATPG
Sbjct: 123 SAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPDDFLVELQSSVDILVATPG 182
Query: 599 RLVDHINTTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVFQLTHNNEQDSVFHSRTFAH 778
RL+DHIN TKGFTL+HLRYLV+DETDRLLREAYQSWLPTV QLTH ++ +F S
Sbjct: 183 RLMDHINFTKGFTLQHLRYLVIDETDRLLREAYQSWLPTVLQLTHADDSSIIFPSYISNP 242
Query: 779 SMIGSLKTTRKSGIERGFKGKTSPRLVKMVLSATLTRDPSKLSPLDLHHPLFLTTGPQRY 958
GSLKT R+ G+ERGFKGK PRL KMVLSATLT+DP KL+ LDLHHPLFLTTG +RY
Sbjct: 243 CSDGSLKTIRRFGVERGFKGKPYPRLAKMVLSATLTQDPGKLAQLDLHHPLFLTTGKRRY 302
Query: 959 QLPEKLESYKLICEAKLKPLYLVALLQELKGEKCIVFTSSVESTNRLSTRLKSFGGLQFK 1138
+LPEKLESY +ICE+KLKPLYLVALLQ L EKCIVFTSSVEST+RL + L F L+ K
Sbjct: 303 KLPEKLESYMMICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCSLLNFFEDLELK 362
Query: 1139 IKKYSGLQRQSERSKTLGAFRKGKIQVLVASDAMTRGMDVEGVRTVINYDVPVYIKTYVH 1318
IK+YSGLQRQS RSKTL AFR G+IQVLV+SDAMTRGMDVEGV+ VINYD+P +IKTY+H
Sbjct: 363 IKEYSGLQRQSLRSKTLNAFRGGEIQVLVSSDAMTRGMDVEGVKNVINYDMPAFIKTYIH 422
Query: 1319 XXXXXXXXXXXXXCFTLLQRHEVKRFKKLLQKAGDNTCSVYPLPADLVESLGRQYTSAFG 1498
CFTLL++ EVKRFKKLLQKA +++C V+ LP+ +E L Y SA
Sbjct: 423 RAGRTARAGQSGRCFTLLRKDEVKRFKKLLQKADNDSCPVHNLPSSSIEFLQPTYVSALE 482
Query: 1499 GTEE 1510
+E
Sbjct: 483 KLKE 486
>ref|XP_002305441.1| predicted protein [Populus trichocarpa] gi|222848405|gb|EEE85952.1|
predicted protein [Populus trichocarpa]
Length = 518
Score = 656 bits (1692), Expect = 0.0
Identities = 337/489 (68%), Positives = 390/489 (79%)
Frame = +2
Query: 74 KSVPVLPWMRSPVDVNLIEDCSLKLLSGLDPRLEEALQRMGFSSLFPVQVAVWQETIGPG 253
K+VPVLPWMRSPVDV+ E+ L +L LDPRL+ ALQ MGF +LFPVQ+AVWQETIGPG
Sbjct: 11 KNVPVLPWMRSPVDVSKFEEYPLDILPCLDPRLKMALQNMGFKTLFPVQIAVWQETIGPG 70
Query: 254 SFERDLCINSPTGSGKTLAYALPIVQTLSTXXXXXXXXXXXXPTRDLALQVKEVFAAIAP 433
+FERDLCINSPTGSGKTLAYALPIVQ LST PTRDLALQVK+VFAAIAP
Sbjct: 71 AFERDLCINSPTGSGKTLAYALPIVQLLSTRAVKCLRALVVLPTRDLALQVKQVFAAIAP 130
Query: 434 AVGLSVGLSVGQTSIVDEISELIKRPKLEAGVCFDPEDRVADLQSSVDILVATPGRLVDH 613
A+GLSVGL+VGQ+SI DEISELIK+P+ EAG+C+DP+D + +LQSSVDILVATPGRL+DH
Sbjct: 131 AMGLSVGLAVGQSSIADEISELIKKPEHEAGICYDPQDVLQELQSSVDILVATPGRLMDH 190
Query: 614 INTTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVFQLTHNNEQDSVFHSRTFAHSMIGS 793
I TTKGFTLEHL YLVVDETDRLLRE+YQSWLPTV +LT ++ V F GS
Sbjct: 191 ITTTKGFTLEHLCYLVVDETDRLLRESYQSWLPTVLKLTRPYDESLVPGVNNFLPCASGS 250
Query: 794 LKTTRKSGIERGFKGKTSPRLVKMVLSATLTRDPSKLSPLDLHHPLFLTTGPQRYQLPEK 973
LKT R+ G+ERGFKGK+ PRL KMVLSATLT+DPSKL+ L+LHHPLFLTTG +RYQLPEK
Sbjct: 251 LKTIRRCGVERGFKGKSYPRLAKMVLSATLTQDPSKLAQLNLHHPLFLTTGQRRYQLPEK 310
Query: 974 LESYKLICEAKLKPLYLVALLQELKGEKCIVFTSSVESTNRLSTRLKSFGGLQFKIKKYS 1153
LESYKLIC +KLKPLYLVA+LQ L GEKCIVFTSSVEST+RL T L FG L+ KIK+YS
Sbjct: 311 LESYKLICVSKLKPLYLVAVLQHLGGEKCIVFTSSVESTHRLCTLLNFFGDLKVKIKEYS 370
Query: 1154 GLQRQSERSKTLGAFRKGKIQVLVASDAMTRGMDVEGVRTVINYDVPVYIKTYVHXXXXX 1333
GLQRQS RSKTL AFR+G+IQVLV+SDAMTRGMD+EGVR +INYD+P Y+KTYVH
Sbjct: 371 GLQRQSVRSKTLKAFREGEIQVLVSSDAMTRGMDIEGVRNIINYDMPAYVKTYVHRAGRT 430
Query: 1334 XXXXXXXXCFTLLQRHEVKRFKKLLQKAGDNTCSVYPLPADLVESLGRQYTSAFGGTEEV 1513
C TLL+ HEVKRFKKLLQKA +++C +Y +P+ V+SL Y SA +E
Sbjct: 431 ARAGQTGRCITLLRTHEVKRFKKLLQKADNDSCPIYSIPSSSVKSLHPFYLSALEKLKET 490
Query: 1514 CGSRNHQDG 1540
S + G
Sbjct: 491 VQSETSRKG 499
>ref|XP_002279094.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 1 [Vitis vinifera]
gi|297740757|emb|CBI30939.3| unnamed protein product
[Vitis vinifera]
Length = 516
Score = 654 bits (1688), Expect = 0.0
Identities = 335/484 (69%), Positives = 388/484 (80%)
Frame = +2
Query: 59 EDQAQKSVPVLPWMRSPVDVNLIEDCSLKLLSGLDPRLEEALQRMGFSSLFPVQVAVWQE 238
E + +K+VPVLPWMRSP+DV+L E+C L L LDPRLE AL+ MGFSSLFPVQVAVWQE
Sbjct: 3 EAKQKKNVPVLPWMRSPIDVSLFEECPLHLFPCLDPRLEVALKNMGFSSLFPVQVAVWQE 62
Query: 239 TIGPGSFERDLCINSPTGSGKTLAYALPIVQTLSTXXXXXXXXXXXXPTRDLALQVKEVF 418
T+GPG+FERDLCINSPTGSGKTLAYALPIV LS+ PTRDLALQVKEVF
Sbjct: 63 TVGPGAFERDLCINSPTGSGKTLAYALPIVNVLSSRAVKCLRALVVLPTRDLALQVKEVF 122
Query: 419 AAIAPAVGLSVGLSVGQTSIVDEISELIKRPKLEAGVCFDPEDRVADLQSSVDILVATPG 598
AAIAPAVGLSVGL+VGQTSI DEISELIKRPKLEAG+C+DPED +LQSSVDILVATPG
Sbjct: 123 AAIAPAVGLSVGLAVGQTSIADEISELIKRPKLEAGICYDPEDISLELQSSVDILVATPG 182
Query: 599 RLVDHINTTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVFQLTHNNEQDSVFHSRTFAH 778
RL+DHINTTKGFTL+HLRYLVVDETDRLLREAYQSWLPTV QLT ++++ +T
Sbjct: 183 RLMDHINTTKGFTLKHLRYLVVDETDRLLREAYQSWLPTVLQLTRSSDESLFPCGKTILP 242
Query: 779 SMIGSLKTTRKSGIERGFKGKTSPRLVKMVLSATLTRDPSKLSPLDLHHPLFLTTGPQRY 958
S GS+ T R+ G+ERGFKG++ PRLVK+VLSATLT+DPSKL+ LDLHHPL LT G +RY
Sbjct: 243 STFGSMNTIRRCGVERGFKGRSYPRLVKIVLSATLTQDPSKLALLDLHHPLLLTAGQRRY 302
Query: 959 QLPEKLESYKLICEAKLKPLYLVALLQELKGEKCIVFTSSVESTNRLSTRLKSFGGLQFK 1138
QLPEKL+S+KLICE+KLKPLYLVALL++L GEKCIVFTSSVES +RL T L FG LQ K
Sbjct: 303 QLPEKLKSFKLICESKLKPLYLVALLRDLGGEKCIVFTSSVESAHRLCTLLNFFGDLQIK 362
Query: 1139 IKKYSGLQRQSERSKTLGAFRKGKIQVLVASDAMTRGMDVEGVRTVINYDVPVYIKTYVH 1318
I +YSGLQ Q RSKTL FR GKIQVL++SD MTRGMDVEGVR VINYDVP +IKTY+H
Sbjct: 363 IGEYSGLQHQRVRSKTLEEFRGGKIQVLISSDGMTRGMDVEGVRNVINYDVPKFIKTYIH 422
Query: 1319 XXXXXXXXXXXXXCFTLLQRHEVKRFKKLLQKAGDNTCSVYPLPADLVESLGRQYTSAFG 1498
CFTLL++ E KRFK+LLQKA ++C V+ + ++ +E+L Y SA
Sbjct: 423 RAGRTARAGQTGRCFTLLRKDEDKRFKQLLQKADSDSCPVHSVASNSIEALHSVYVSALE 482
Query: 1499 GTEE 1510
+E
Sbjct: 483 KLKE 486
>ref|NP_193320.6| RNA helicase 1 [Arabidopsis thaliana]
gi|334302879|sp|Q7FGZ2.3|RH1_ARATH RecName: Full=DEAD-box
ATP-dependent RNA helicase 1 gi|332658259|gb|AEE83659.1|
RNA helicase 1 [Arabidopsis thaliana]
Length = 522
Score = 603 bits (1555), Expect = e-170
Identities = 310/497 (62%), Positives = 377/497 (75%), Gaps = 1/497 (0%)
Frame = +2
Query: 53 EMEDQAQKSVPVLPWMRSPVDVNLIEDCSLKLLSGLDPRLEEALQRMGFSSLFPVQVAVW 232
+ ED+ + V+PWMR+PVDV+ +E+C+L L L+P+L++AL+ MG SSLFPVQVAVW
Sbjct: 4 DKEDKTEMD-SVVPWMRAPVDVSNVENCALDTLPCLNPKLKKALENMGISSLFPVQVAVW 62
Query: 233 QETIGPGSFERDLCINSPTGSGKTLAYALPIVQTLSTXXXXXXXXXXXXPTRDLALQVKE 412
ETIGPG FERD+C+NSPTGSGKTL+YALPIVQ L++ PTRDLALQVK+
Sbjct: 63 HETIGPGGFERDICVNSPTGSGKTLSYALPIVQLLASRPVRCLRALVVLPTRDLALQVKD 122
Query: 413 VFAAIAPAVGLSVGLSVGQTSIVDEISELIKRPKLEAGVCFDPEDRVADLQSSVDILVAT 592
VF AIAPAVGLSVG +VGQ+SI EIS+LIK PKL+AG+C+DP+D +L+S+VDILVAT
Sbjct: 123 VFDAIAPAVGLSVGSAVGQSSIAGEISQLIKTPKLDAGICYDPDDLSQNLESAVDILVAT 182
Query: 593 PGRLVDHINTTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVFQLTHNNEQDSVFHSRT- 769
PGRL+DHIN TKGFTLEHLRYLVVDETDRLLREAYQSWLPTV QLT ++ DS+F S T
Sbjct: 183 PGRLMDHINNTKGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSD-DSLFPSFTP 241
Query: 770 FAHSMIGSLKTTRKSGIERGFKGKTSPRLVKMVLSATLTRDPSKLSPLDLHHPLFLTTGP 949
F S GSL+T R+ +ERGFKGK PRLVKMVLSATLT+DPSKL LDLHHPLF+TTG
Sbjct: 242 FVPSAFGSLQTVRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGG 301
Query: 950 QRYQLPEKLESYKLICEAKLKPLYLVALLQELKGEKCIVFTSSVESTNRLSTRLKSFGGL 1129
RY+LPEKLE +LICE +KP+YLVALL+ +GEKCI+FTSSVE+T RL L FG
Sbjct: 302 SRYRLPEKLECLRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDP 361
Query: 1130 QFKIKKYSGLQRQSERSKTLGAFRKGKIQVLVASDAMTRGMDVEGVRTVINYDVPVYIKT 1309
+ K K+YSG QS RSK L AFRKG IQVLVASDA+TRGMDV+GV VINYD+P + KT
Sbjct: 362 KIKAKEYSGGLNQSLRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKT 421
Query: 1310 YVHXXXXXXXXXXXXXCFTLLQRHEVKRFKKLLQKAGDNTCSVYPLPADLVESLGRQYTS 1489
++H CFTLL HEV+RF KLL+K G ++C +YP+P ++S+ YT
Sbjct: 422 FIHRAGRTARAGQAGRCFTLLSNHEVRRFSKLLEKVGSDSCPIYPIPPTSLDSIRATYTP 481
Query: 1490 AFGGTEEVCGSRNHQDG 1540
A +E+ S + G
Sbjct: 482 ALEKLKELVESEAPKKG 498
>ref|XP_002870205.1| hypothetical protein ARALYDRAFT_493299 [Arabidopsis lyrata subsp.
lyrata] gi|297316041|gb|EFH46464.1| hypothetical protein
ARALYDRAFT_493299 [Arabidopsis lyrata subsp. lyrata]
Length = 522
Score = 600 bits (1548), Expect = e-169
Identities = 306/486 (62%), Positives = 370/486 (76%), Gaps = 1/486 (0%)
Frame = +2
Query: 86 VLPWMRSPVDVNLIEDCSLKLLSGLDPRLEEALQRMGFSSLFPVQVAVWQETIGPGSFER 265
V+PWMR+PVDV+ +E+C+L+ L L+P+L++AL+ MG SSLFPVQVAVW ETIGPG FER
Sbjct: 14 VVPWMRAPVDVSNVENCALETLPCLNPKLKKALENMGISSLFPVQVAVWHETIGPGGFER 73
Query: 266 DLCINSPTGSGKTLAYALPIVQTLSTXXXXXXXXXXXXPTRDLALQVKEVFAAIAPAVGL 445
D+C+NSPTGSGKTL+YALPIVQ L++ PTRDLALQVK+VF AIAP VGL
Sbjct: 74 DICVNSPTGSGKTLSYALPIVQILASRPVRCLRALVVLPTRDLALQVKDVFDAIAPTVGL 133
Query: 446 SVGLSVGQTSIVDEISELIKRPKLEAGVCFDPEDRVADLQSSVDILVATPGRLVDHINTT 625
SVG +VGQ+SI EIS+LIK PKL+AG+C+DPED + +S+VDILVATPGRL+DHIN T
Sbjct: 134 SVGSAVGQSSIAGEISQLIKTPKLDAGICYDPEDLSQNFESAVDILVATPGRLMDHINNT 193
Query: 626 KGFTLEHLRYLVVDETDRLLREAYQSWLPTVFQLTHNNEQDSVFHSRT-FAHSMIGSLKT 802
KGFTLEHLRYLVVDETDRLLREAYQSWLPTV QLT ++ D +F S T F S GSL+T
Sbjct: 194 KGFTLEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSD-DGLFPSCTPFVPSAFGSLRT 252
Query: 803 TRKSGIERGFKGKTSPRLVKMVLSATLTRDPSKLSPLDLHHPLFLTTGPQRYQLPEKLES 982
R+ +ERGFKGK PRLVKMVLSATLT+DPSKL LDLHHPLF+TTG RY+LPEKLE
Sbjct: 253 VRRQSVERGFKGKPYPRLVKMVLSATLTQDPSKLIQLDLHHPLFMTTGGSRYRLPEKLEC 312
Query: 983 YKLICEAKLKPLYLVALLQELKGEKCIVFTSSVESTNRLSTRLKSFGGLQFKIKKYSGLQ 1162
+LICE +KP+YLVALL+ +GEKCI+FTSSVE+T RL L FG + K K+YSG
Sbjct: 313 LRLICETGMKPVYLVALLKSWEGEKCIIFTSSVETTRRLCKLLNFFGDPKIKAKEYSGGL 372
Query: 1163 RQSERSKTLGAFRKGKIQVLVASDAMTRGMDVEGVRTVINYDVPVYIKTYVHXXXXXXXX 1342
QS RSK L AFRKG IQVLVASDA+TRGMDV+GV VINYD+P + KT++H
Sbjct: 373 NQSVRSKELKAFRKGDIQVLVASDALTRGMDVKGVTNVINYDMPPFAKTFIHRAGRTARA 432
Query: 1343 XXXXXCFTLLQRHEVKRFKKLLQKAGDNTCSVYPLPADLVESLGRQYTSAFGGTEEVCGS 1522
CFTLL HEV+RF KLL+K G ++C +YP+P ++S+ YT A +E+ S
Sbjct: 433 GQAGRCFTLLSNHEVRRFSKLLKKVGSDSCPIYPIPPTSLDSIRATYTPALEKLKELVES 492
Query: 1523 RNHQDG 1540
+ G
Sbjct: 493 EAPKKG 498