BLASTX nr result

ID: Cimicifuga21_contig00018310 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00018310
         (2691 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB75932.1| putative protein [Arabidopsis thaliana]               266   1e-76
emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]               258   5e-75
gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thal...   263   2e-73
emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]         263   3e-73
gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabi...   262   1e-72

>emb|CAB75932.1| putative protein [Arabidopsis thaliana]
          Length = 1339

 Score =  266 bits (680), Expect(2) = 1e-76
 Identities = 173/517 (33%), Positives = 259/517 (50%), Gaps = 38/517 (7%)
 Frame = +3

Query: 1245 HK*SADGVPFFKNINTGVVCRGCQYGKSHRLPFQRSMN-RGSTMF*LVHSDLMGPTRTPS 1421
            HK    G+P  K   T  +C  C  GK HR    +  + + ST   LVHSD+ GP    S
Sbjct: 453  HKKMVIGLPILKA--TKEICAICLTGKQHRESMSKKTSWKSSTQLQLVHSDICGPITPIS 510

Query: 1422 YSGFSYVMVIVDDFFRYTWVYFLHQKSEALSRFIKFHMFVK*EFGSSISVCAPIIVESTY 1601
            +SG  Y++  +DDF R TWVYFLH+KSEA + F  F   V+ E G+ ++ C        +
Sbjct: 511  HSGKRYILSFIDDFTRKTWVYFLHEKSEAFATFKIFKASVEKEIGAFLT-CLRTDRGGEF 569

Query: 1602 LRSSL-HIVLKMGFNGK*HA*KHPQ*------KLAHLTSVCLSWLHEKNLPKELWAEAIR 1760
              +         G + +  A   PQ       K   + +   S L E+ +PK  W+EA +
Sbjct: 570  TSNEFGEFCRSHGISRQLTAAFTPQQNGVAERKNRTIMNAVRSMLSERQVPKMFWSEATK 629

Query: 1761 CLCHVINRLPSWPGVSPSPFEDLYHHKPNVSYF*VFGSVCYVYVPKSSITKLDPKVRKCI 1940
               H+ NR P+      +P E     KP V YF VFG + YV++P    +KLD K +KC+
Sbjct: 630  WSVHIQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIGYVHIPDQKRSKLDDKSKKCV 689

Query: 1941 FIGYDSHRKGWRCMDPETN*FIISHDVIFDKVSSY-YSAAPVS---------------NA 2072
            F+G     K WR  DP     +IS DV+FD+  S+ +  A V                N+
Sbjct: 690  FLGVSEESKAWRLYDPVMKKIVISKDVVFDEDKSWDWDQADVEAKEVTLECGDEDDEKNS 749

Query: 2073 IALEPFS--------SDHNYGEKGSIGSLFGAPVQQDVKNI*RSTRERRQPDYLTNYE-- 2222
              +EP +        SD+N      +     AP     K     TRERR P ++ +YE  
Sbjct: 750  EVVEPIAVASPNHVGSDNNVSSSPILAPSSPAPSPVAAK----VTRERRPPGWMADYETG 805

Query: 2223 ----VQLNYSTVTSYFLLGLTCDDEPKCYSEAQGAAAWEATMDEDIKALHKNNTWELVLK 2390
                ++ N S +    LL +  + +P  + +A     W   M+ +I+++ KNNTWEL   
Sbjct: 806  EGEEIEENLSVM----LLMMMTEADPIQFDDAVKDKIWREAMEHEIESIVKNNTWELTTL 861

Query: 2391 QQDAELVTCKWVFKLKKKVDGTVDRYKARLVARRFFQQYKLNYEETFSPIAKMVTGRTII 2570
             +    +  KWV+K K   DG VD+YKARLVA+ + Q Y ++Y E F+P+A++ T RTI+
Sbjct: 862  PKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQCYGIDYTEVFAPVARLDTVRTIL 921

Query: 2571 SLVTYNGWNLWHLDVNNVFLYGELVRDIYVEQPQGFV 2681
            ++ +   W ++ LDV + FL+GEL  ++YV QP+GF+
Sbjct: 922  AISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFI 958



 Score = 49.7 bits (117), Expect(2) = 1e-76
 Identities = 82/457 (17%), Positives = 168/457 (36%), Gaps = 90/457 (19%)
 Frame = +1

Query: 163  YSYWKLCMESYLQGQDLWELIS--------GDETMS------------------------ 246
            Y +W + ME++L+ ++LW L+         G   +S                        
Sbjct: 19   YDFWSMTMENFLRSRELWRLVEEGIPAIVVGTTPVSEAQRSAVEEAKLKDLKVKNFLFQA 78

Query: 247  ISKDYIEHVRDVSSPKQVWETLERLF---TQKNTLRLQYLENELDAI------------- 378
            I ++ +E + D S+ K +WE++++ +   T+    +LQ L  E + +             
Sbjct: 79   IDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFELLAMKEGEKIDTFLG 138

Query: 379  ----------TRGWATQLSIVDLENLLS------------NQEQSIKKISVKPISG---V 483
                      T G   + S +  + L S             +   +  +S+  + G   V
Sbjct: 139  RTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDLSTLSIDELHGSLLV 198

Query: 484  ADVLFTKHQWKN---KVT--SRYSQSNSKQ----STAEGDSKGHIQQNCCVTLASEDANI 636
             +     H  +    KVT   R SQ   +     S   G  +G    N  +    +  N+
Sbjct: 199  HEQRLNGHVQEEQALKVTHEERPSQGRGRGVFRGSRGRGRGRGRSGTNRAIVECYKCHNL 258

Query: 637  VHESNESD*PKWKHYFSIEVIGKPDNVASVVHSTDVTTDATGSVDYKKQWIVDFGCSHHA 816
             H   E   P+W+   +   + + + +  + +            +  + W +D GCS+H 
Sbjct: 259  GHFQYEC--PEWEKNANYAELEEEEELLLMAYVEQ------NQANRDEVWFLDSGCSNHM 310

Query: 817  TGDATLLFGVRLHVGKRVIVTADNSLHHVMKEGHLNVKADSSHNKGVT--LKDIYHVLRL 990
            TG     F        R +   +++   V+ +G + VK +     GVT  + ++Y+V  L
Sbjct: 311  TGSKE-WFSELEEGFNRTVKLGNDTRMSVVGKGSVKVKVN-----GVTQVIPEVYYVPEL 364

Query: 991  KKYLASVSHIVDYGKYVLFGPDDV*IFDNLQYVSADVFFTRKRKNSLYVLSASEAYIQKI 1170
            +  L S+  + + G  +L       ++   +     +  T    N ++ L AS+     +
Sbjct: 365  RNNLLSLGQLQERGLAILIRDGTCKVYHPSK---GAIMETNMSGNRMFFLLASKPQKNSL 421

Query: 1171 NQNTSP------SVWHARLGHVGYQLLQKISINNLLM 1263
               T         +WH R GH+  + L+ ++   +++
Sbjct: 422  CLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHKKMVI 458


>emb|CAC95126.1| gag-pol polyprotein [Populus deltoides]
          Length = 1382

 Score =  258 bits (658), Expect(2) = 5e-75
 Identities = 163/507 (32%), Positives = 246/507 (48%), Gaps = 44/507 (8%)
 Frame = +3

Query: 1302 CRGCQYGKSHRLPFQRSMNRGSTMF*LVHSDLMGPTRTPSYSGFSYVMVIVDDFFRYTWV 1481
            C GC+  K   LPF RS +  S+ F L+HSD+ GP+   +  G  Y +  +DD  RY WV
Sbjct: 513  CSGCKLAKFSALPFNRSTSVSSSPFDLIHSDVWGPSPVSTKGGSRYYVSFIDDHTRYCWV 572

Query: 1482 YFLHQKSEALSRFIKFHMFVK*EFGSSISV--------------CAPIIVESTYLRSSLH 1619
            Y +  +SE    +  F   +K +  + I                C  + ++ T  ++S  
Sbjct: 573  YLMKHRSEFFEIYAAFRALIKTQHSAVIKCFRCDLGGEYTSNKFCQMLALDGTIHQTSCT 632

Query: 1620 IVLKMGFNGK*HA*KHPQ*KLAHLTSVCLSWLHEKNLPKELWAEAIRCLCHVINRLPSWP 1799
               +   NG        + K  H+     S L    +  E W EA+     +IN +PS  
Sbjct: 633  DTPEQ--NGV------AERKHRHIVETARSLLLSAFVLSEFWGEAVLTAVSLINTIPSSH 684

Query: 1800 GVSPSPFEDLYHHKPNVSYF*VFGSVCYVYVPKSSITKLDPKVRKCIFIGYDSHRKGWRC 1979
                SPFE LY H P+ S F VFG   +V  P     KL  +   C+F+GY   +KG+RC
Sbjct: 685  SSGLSPFEKLYGHVPDYSSFRVFGCTYFVLHPHVERNKLSSRSAICVFLGYGEGKKGYRC 744

Query: 1980 MDPETN*FIISHDVIFDKVSSYYSAAPV------SNAIALEPFSSD-------------- 2099
             DP T    +SH V+F +   ++S          S+ I ++PFS D              
Sbjct: 745  FDPITQKLYVSHHVVFLEHIPFFSIPSTTHSLTKSDLIHIDPFSEDSGNDTSPYVRSICT 804

Query: 2100 HNYGEKGSIGSLFGAPVQQDVKNI*RSTRERRQPDYLTNYEVQLN----------YSTVT 2249
            HN    G++  L G P         +++ E   P    +  ++ +          YS+  
Sbjct: 805  HNSAGTGTL--LSGTPEASFSSTAPQASSEIVDPPPRQSIRIRKSTKLPDFAYSCYSSSF 862

Query: 2250 SYFLLGLTCDDEPKCYSEAQGAAAWEATMDEDIKALHKNNTWELVLKQQDAELVTCKWVF 2429
            + FL  + C  EP  Y EA      +  MDE++ ALHK +TW+LV       +V C+WV+
Sbjct: 863  TSFLAYIHCLFEPSSYKEAILDPLGQQAMDEELSALHKTDTWDLVPLPPGKSVVGCRWVY 922

Query: 2430 KLKKKVDGTVDRYKARLVARRFFQQYKLNYEETFSPIAKMVTGRTIISLVTYNGWNLWHL 2609
            K+K   DG+++RYKARLVA+ + QQY ++YEETF+PIAKM T RT+I++ +   W++  L
Sbjct: 923  KIKTNSDGSIERYKARLVAKGYSQQYGMDYEETFAPIAKMTTIRTLIAVASIRQWHISQL 982

Query: 2610 DVNNVFLYGELVRDIYVEQPQGFVSHE 2690
            DV N FL G+L  ++Y+  P G +SH+
Sbjct: 983  DVKNAFLNGDLQEEVYMAPPPG-ISHD 1008



 Score = 52.8 bits (125), Expect(2) = 5e-75
 Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 12/172 (6%)
 Frame = +1

Query: 781  QWIVDFGCSHHATGDATLLFGVRLHVGKRVIVTADNSLHHVMKEGHLNVKADSSHNKGVT 960
            +W++D G SHH + D++    V   +    ++TAD +   +   G       S     ++
Sbjct: 341  EWVLDSGASHHMSPDSSSFTSVS-PLSSIPVMTADGTPMPLAGVG-------SVVTLHLS 392

Query: 961  LKDIYHVLRLKKYLASVSHIVDYGKYVLFGPDDV*IFDNLQYVSADVFFTRKRKNSLYVL 1140
            L ++Y + +LK  LAS+  I D G Y++          +LQ  S  +  T +R+N LY+L
Sbjct: 393  LPNVYLIPKLKLNLASIGQICDSGDYLVMFSGSFCCVQDLQ--SQKLIGTGRRENGLYIL 450

Query: 1141 ------------SASEAYIQKINQNTSPSVWHARLGHVGYQLLQKISINNLL 1260
                        +   ++ +    ++S  +WH+RLGHV    L+ ++    L
Sbjct: 451  DELKVPVVVAATTVDLSFFRLSLSSSSFYLWHSRLGHVSSSRLRFLASTGAL 502



 Score = 59.7 bits (143), Expect = 4e-06
 Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 28/111 (25%)
 Frame = +1

Query: 130 QAVVDKLVGNNYSYWKLCMESYLQGQDLWELISG----------DETMSIS--------- 252
           Q+V  +L G NYSYW   M ++L+G+ +W  +SG           +T+SI          
Sbjct: 10  QSVSVRLDGKNYSYWSYVMRNFLKGKKMWGYVSGTYVVPKNTEEGDTVSIDTWEANNAKI 69

Query: 253 ----KDYIEH-----VRDVSSPKQVWETLERLFTQKNTLRLQYLENELDAI 378
                +Y+EH     +    + K+VW+ L+RLFTQ N  +   LEN++ A+
Sbjct: 70  ITWINNYVEHSIGTQLAKYETAKEVWDHLQRLFTQSNFAKQYQLENDIRAL 120


>gb|AAD50001.1|AC007259_14 Hypothetical protein [Arabidopsis thaliana]
          Length = 1352

 Score =  263 bits (672), Expect(2) = 2e-73
 Identities = 166/490 (33%), Positives = 245/490 (50%), Gaps = 17/490 (3%)
 Frame = +3

Query: 1263 GVPFFKNINTGVVCRGCQYGKSHRLPFQR-SMNRGSTMF*LVHSDLMGPTRTPSYSGFSY 1439
            G+P   + N   VC GC  GK  ++ F + S +R      L+H+D+ GP +  S    +Y
Sbjct: 491  GLPCINHPNQ--VCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNY 548

Query: 1440 VMVIVDDFFRYTWVYFLHQKSEALSRFIKFHMFVK*EFGSSISVCAPIIVESTYLRSSLH 1619
             ++ +DDF R TWVYFL +KSE    F KF   V+ E G  I             +  L 
Sbjct: 549  FLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLK 608

Query: 1620 IVLKMGFNGK*HA*KHPQ*------KLAHLTSVCLSWLHEKNLPKELWAEAIRCLCHVIN 1781
                 G   +    + PQ       K   +  +  S L  K LPKELWAEA+ C  +++N
Sbjct: 609  YCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLN 668

Query: 1782 RLPSWPGVSPSPFEDLYHHKPNVSYF*VFGSVCYVYVPKSSITKLDPKVRKCIFIGYDSH 1961
            R P+      +P E     KP VS+  VFGS+ + +VP    +KLD K  K IFIGYD++
Sbjct: 669  RSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNN 728

Query: 1962 RKGWRCMDPETN*FIISHDVIFDKVSSY--------YSAAPVSNAIALEPFSSDHNYGEK 2117
             KG++  +P+T   IIS +++FD+   +        Y+  P       EP   +    E 
Sbjct: 729  SKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEP 788

Query: 2118 GSIGSLFGAPVQQDVKNI*RSTRER--RQPDYLTNYEVQLNYSTVTSYFLLGLTCDDEPK 2291
             +       P       I  S+ ER  R       YEV  N   +T + L     + EP 
Sbjct: 789  TT------PPTSPTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFA---ECEPM 839

Query: 2292 CYSEAQGAAAWEATMDEDIKALHKNNTWELVLKQQDAELVTCKWVFKLKKKVDGTVDRYK 2471
             + +A     W   MDE+IK++ KN+TWEL       + +  KWV+K KK   G V+RYK
Sbjct: 840  DFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYK 899

Query: 2472 ARLVARRFFQQYKLNYEETFSPIAKMVTGRTIISLVTYNGWNLWHLDVNNVFLYGELVRD 2651
            ARLVA+ + Q+  ++Y+E F+P+A++ T R IISL   N W +  +DV + FL G+L  +
Sbjct: 900  ARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEE 959

Query: 2652 IYVEQPQGFV 2681
            +Y+EQPQG++
Sbjct: 960  VYIEQPQGYI 969



 Score = 42.0 bits (97), Expect(2) = 2e-73
 Identities = 38/186 (20%), Positives = 85/186 (45%), Gaps = 5/186 (2%)
 Frame = +1

Query: 703  KPDNVASVVHSTDVTTDATGSVDYKKQ---WIVDFGCSHHATGDATLLFGVRLHVGKRVI 873
            K + V   +   D+   A+   D +K+   W +D G S+H  G  ++   +   V   V 
Sbjct: 305  KANYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNVA 364

Query: 874  VTADNSLHHVMKEGHLNVKADSSHNKGVTLKDIYHVLRLKKYLASVSHIVDYGKYVLFGP 1053
            +  D S   V  +G++ ++  +  ++ ++  ++Y++  +K  + S+  +++ G  +    
Sbjct: 365  L-GDESKMEVKGKGNILIRLKNGDHQFIS--NVYYIPSMKTNILSLGQLLEKGYDIRLKD 421

Query: 1054 DDV*IFDNLQYVSADVFFTRKRKNSLYVLSASEAYIQ--KINQNTSPSVWHARLGHVGYQ 1227
            +++ I D    +   V  +   KN ++VL+      Q  K+       +WH R GH+ + 
Sbjct: 422  NNLSIRDQESNLITKVPMS---KNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFG 478

Query: 1228 LLQKIS 1245
             L+ +S
Sbjct: 479  GLELLS 484


>emb|CAB71063.1| copia-type polyprotein [Arabidopsis thaliana]
          Length = 1352

 Score =  263 bits (672), Expect(2) = 3e-73
 Identities = 166/490 (33%), Positives = 245/490 (50%), Gaps = 17/490 (3%)
 Frame = +3

Query: 1263 GVPFFKNINTGVVCRGCQYGKSHRLPFQR-SMNRGSTMF*LVHSDLMGPTRTPSYSGFSY 1439
            G+P   + N   VC GC  GK  ++ F + S +R      L+H+D+ GP +  S    +Y
Sbjct: 491  GLPCINHPNQ--VCEGCLLGKQFKMSFPKESSSRAQKPLELIHTDVCGPIKPKSLGKSNY 548

Query: 1440 VMVIVDDFFRYTWVYFLHQKSEALSRFIKFHMFVK*EFGSSISVCAPIIVESTYLRSSLH 1619
             ++ +DDF R TWVYFL +KSE    F KF   V+ E G  I             +  L 
Sbjct: 549  FLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLK 608

Query: 1620 IVLKMGFNGK*HA*KHPQ*------KLAHLTSVCLSWLHEKNLPKELWAEAIRCLCHVIN 1781
                 G   +    + PQ       K   +  +  S L  K LPKELWAEA+ C  +++N
Sbjct: 609  YCEDNGIRRQLTVPRSPQQNGVVERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLN 668

Query: 1782 RLPSWPGVSPSPFEDLYHHKPNVSYF*VFGSVCYVYVPKSSITKLDPKVRKCIFIGYDSH 1961
            R P+      +P E     KP VS+  VFGS+ + +VP    +KLD K  K IFIGYD++
Sbjct: 669  RSPTKSVSGKTPQEAWSGRKPGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNN 728

Query: 1962 RKGWRCMDPETN*FIISHDVIFDKVSSY--------YSAAPVSNAIALEPFSSDHNYGEK 2117
             KG++  +P+T   IIS +++FD+   +        Y+  P       EP   +    E 
Sbjct: 729  SKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEP 788

Query: 2118 GSIGSLFGAPVQQDVKNI*RSTRER--RQPDYLTNYEVQLNYSTVTSYFLLGLTCDDEPK 2291
             +       P       I  S+ ER  R       YEV  N   +T + L     + EP 
Sbjct: 789  TT------PPTSPTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFA---ECEPM 839

Query: 2292 CYSEAQGAAAWEATMDEDIKALHKNNTWELVLKQQDAELVTCKWVFKLKKKVDGTVDRYK 2471
             + +A     W   MDE+IK++ KN+TWEL       + +  KWV+K KK   G V+RYK
Sbjct: 840  DFQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYK 899

Query: 2472 ARLVARRFFQQYKLNYEETFSPIAKMVTGRTIISLVTYNGWNLWHLDVNNVFLYGELVRD 2651
            ARLVA+ + Q+  ++Y+E F+P+A++ T R IISL   N W +  +DV + FL G+L  +
Sbjct: 900  ARLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEE 959

Query: 2652 IYVEQPQGFV 2681
            +Y+EQPQG++
Sbjct: 960  VYIEQPQGYI 969



 Score = 41.2 bits (95), Expect(2) = 3e-73
 Identities = 38/186 (20%), Positives = 84/186 (45%), Gaps = 5/186 (2%)
 Frame = +1

Query: 703  KPDNVASVVHSTDVTTDATGSVDYKKQ---WIVDFGCSHHATGDATLLFGVRLHVGKRVI 873
            K   V   +   D+   A+   D +K+   W +D G S+H  G  ++   +   V   V 
Sbjct: 305  KAHYVEEKIQEEDMLLMASYKKDEQKENHKWYLDSGASNHMCGRKSMFAELDESVRGNVA 364

Query: 874  VTADNSLHHVMKEGHLNVKADSSHNKGVTLKDIYHVLRLKKYLASVSHIVDYGKYVLFGP 1053
            +  D S   V  +G++ ++  +  ++ ++  ++Y++  +K  + S+  +++ G  +    
Sbjct: 365  L-GDESKMEVKGKGNILIRLKNGDHQFIS--NVYYIPSMKTNILSLGQLLEKGYDIRLKD 421

Query: 1054 DDV*IFDNLQYVSADVFFTRKRKNSLYVLSASEAYIQ--KINQNTSPSVWHARLGHVGYQ 1227
            +++ I D    +   V  +   KN ++VL+      Q  K+       +WH R GH+ + 
Sbjct: 422  NNLSIRDQESNLITKVPMS---KNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFG 478

Query: 1228 LLQKIS 1245
             L+ +S
Sbjct: 479  GLELLS 484


>gb|AAG60117.1|AC073555_1 copia-type polyprotein, putative [Arabidopsis thaliana]
          Length = 1352

 Score =  262 bits (670), Expect(2) = 1e-72
 Identities = 166/490 (33%), Positives = 244/490 (49%), Gaps = 17/490 (3%)
 Frame = +3

Query: 1263 GVPFFKNINTGVVCRGCQYGKSHRLPFQR-SMNRGSTMF*LVHSDLMGPTRTPSYSGFSY 1439
            G+P   + N   VC GC  GK  ++ F + S +R      L+H+D+ GP +  S    +Y
Sbjct: 491  GLPCINHPNQ--VCEGCLLGKQFKMSFPKESSSRAQKSLELIHTDVCGPIKPKSLGKSNY 548

Query: 1440 VMVIVDDFFRYTWVYFLHQKSEALSRFIKFHMFVK*EFGSSISVCAPIIVESTYLRSSLH 1619
             ++ +DDF R TWVYFL +KSE    F KF   V+ E G  I             +  L 
Sbjct: 549  FLLFIDDFSRKTWVYFLKEKSEVFEIFKKFKAHVEKESGLVIKTMRSDRGGEFTSKEFLK 608

Query: 1620 IVLKMGFNGK*HA*KHPQ*------KLAHLTSVCLSWLHEKNLPKELWAEAIRCLCHVIN 1781
                 G   +    + PQ       K   +  +  S L  K LPKELWAEA+ C  +++N
Sbjct: 609  YCEDNGIRRQLTVPRSPQQNGVAERKNRTILEMARSMLKSKRLPKELWAEAVACAVYLLN 668

Query: 1782 RLPSWPGVSPSPFEDLYHHKPNVSYF*VFGSVCYVYVPKSSITKLDPKVRKCIFIGYDSH 1961
            R P+      +P E     K  VS+  VFGS+ + +VP    +KLD K  K IFIGYD++
Sbjct: 669  RSPTKSVSGKTPQEAWSGRKSGVSHLRVFGSIAHAHVPDEKRSKLDDKSEKYIFIGYDNN 728

Query: 1962 RKGWRCMDPETN*FIISHDVIFDKVSSY--------YSAAPVSNAIALEPFSSDHNYGEK 2117
             KG++  +P+T   IIS +++FD+   +        Y+  P       EP   +    E 
Sbjct: 729  SKGYKLYNPDTKKTIISRNIVFDEEGEWDWNSNEEDYNFFPHFEEDEPEPTREEPPSEEP 788

Query: 2118 GSIGSLFGAPVQQDVKNI*RSTRER--RQPDYLTNYEVQLNYSTVTSYFLLGLTCDDEPK 2291
             +       P       I  S+ ER  R       YEV  N   +T + L     + EP 
Sbjct: 789  TT------PPTSPTSSQIEESSSERTPRFRSIQELYEVTENQENLTLFCLFA---ECEPM 839

Query: 2292 CYSEAQGAAAWEATMDEDIKALHKNNTWELVLKQQDAELVTCKWVFKLKKKVDGTVDRYK 2471
             + EA     W   MDE+IK++ KN+TWEL       + +  KWV+K KK   G V+RYK
Sbjct: 840  DFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYK 899

Query: 2472 ARLVARRFFQQYKLNYEETFSPIAKMVTGRTIISLVTYNGWNLWHLDVNNVFLYGELVRD 2651
            ARLVA+ + Q+  ++Y+E F+P+A++ T R IISL   N W +  +DV + FL G+L  +
Sbjct: 900  ARLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEE 959

Query: 2652 IYVEQPQGFV 2681
            +Y+EQPQG++
Sbjct: 960  VYIEQPQGYI 969



 Score = 40.4 bits (93), Expect(2) = 1e-72
 Identities = 37/186 (19%), Positives = 85/186 (45%), Gaps = 5/186 (2%)
 Frame = +1

Query: 703  KPDNVASVVHSTDVTTDATGSVDYKKQ---WIVDFGCSHHATGDATLLFGVRLHVGKRVI 873
            K + V   +   D+   A+   D +++   W +D G S+H  G  ++   +   V   V 
Sbjct: 305  KANYVEEKIQEEDMLLMASYKKDEQEENHKWYLDSGASNHMCGRKSMFAELDESVRGNVA 364

Query: 874  VTADNSLHHVMKEGHLNVKADSSHNKGVTLKDIYHVLRLKKYLASVSHIVDYGKYVLFGP 1053
            +  D S   V  +G++ ++  +  ++ ++  ++Y++  +K  + S+  +++ G  +    
Sbjct: 365  L-GDESKMEVKGKGNILIRLKNGDHQFIS--NVYYIPSMKTNILSLGQLLEKGYDIRLKD 421

Query: 1054 DDV*IFDNLQYVSADVFFTRKRKNSLYVLSASEAYIQ--KINQNTSPSVWHARLGHVGYQ 1227
            +++ I D    +   V  +   KN ++VL+      Q  K+       +WH R GH+ + 
Sbjct: 422  NNLSIRDQESNLITKVPMS---KNRMFVLNIRNDIAQCLKMCYKEESWLWHLRFGHLNFG 478

Query: 1228 LLQKIS 1245
             L+ +S
Sbjct: 479  GLELLS 484


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