BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00018239
         (1358 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   358   1e-96
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...   346   9e-93
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   335   1e-89
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...   322   1e-85
ref|NP_564050.1| transcription initiation factor TFIIH subunit H...   320   4e-85

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
            vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
            product [Vitis vinifera]
          Length = 297

 Score =  358 bits (920), Expect = 1e-96
 Identities = 186/280 (66%), Positives = 200/280 (71%), Gaps = 1/280 (0%)
 Frame = +3

Query: 210  NPFFWGGANXXXXXXXXXXXXXHXXXXXXXXXXXXXXXXXXXXXTGVNSCSYIYDSSSQT 389
            NPFFW  A+             H                     TG NSC++I+DSSS  
Sbjct: 23   NPFFWSTASLPFSKFLS-----HVLAFLNSILLINQLNQVVVIATGCNSCNFIFDSSSVP 77

Query: 390  VVDSLESGRMTALSSRILGKLEEFVITDEQLSKEKXXXXXXXXXXXXXXXXX-CYIQRVF 566
               +LE+GRM AL S +L KLEEFV  DE+LSKE                   CYIQRVF
Sbjct: 78   ANPNLENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMALCYIQRVF 137

Query: 567  RSGSLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGSQHSAFLQQASYI 746
            R+G LHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIG+QHSAFLQQASYI
Sbjct: 138  RTGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYI 197

Query: 747  TGGVYLKPQHLDGLFQYLSTVFATDLQSRSVLELPKPAGVDFRASCFCHKKTIDMGYICS 926
            TGGVYLKPQ LDGLFQYLSTVFATDL SR  L+LPKPAGVDFRASCFCHK TIDMGYICS
Sbjct: 198  TGGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRASCFCHKNTIDMGYICS 257

Query: 927  VCLSIFCKHHKKCSTCGSVFGEAHPEAASTPDKKRKTPAT 1046
            VCLSIFCKHHKKCSTCGSVFG+A  +  S  D+KRKTP T
Sbjct: 258  VCLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRKTPET 297


>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
            predicted protein [Populus trichocarpa]
          Length = 289

 Score =  346 bits (887), Expect = 9e-93
 Identities = 170/236 (72%), Positives = 188/236 (79%), Gaps = 1/236 (0%)
 Frame = +3

Query: 342  TGVNSCSYIYDSSSQTVVDSLESGRMTALSSRILGKLEEFVITDEQLSKEKXXXXXXXXX 521
            +G N+C YIYDSSS       E GRM +L S +L KLEEF+I DE+L KE+         
Sbjct: 54   SGYNTCDYIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSL 113

Query: 522  XXXXXXXX-CYIQRVFRSGSLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSC 698
                     CYIQRVFRSG LHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSC
Sbjct: 114  LSGSLSMALCYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSC 173

Query: 699  VIGSQHSAFLQQASYITGGVYLKPQHLDGLFQYLSTVFATDLQSRSVLELPKPAGVDFRA 878
             +G+ +SAFLQQASYITGGVY+KPQHLDGLFQYL+TVFATDL SRS ++LP+PAGVDFRA
Sbjct: 174  YVGAHNSAFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRA 233

Query: 879  SCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGEAHPEAASTPDKKRKTPAT 1046
            SCFCHK TIDMGYICSVCLSIFC HHKKCSTCGSVFG+A  + +ST D KRK P T
Sbjct: 234  SCFCHKTTIDMGYICSVCLSIFCNHHKKCSTCGSVFGQAQSDTSSTSDLKRKAPET 289


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
            sativus]
          Length = 295

 Score =  335 bits (860), Expect = 1e-89
 Identities = 181/300 (60%), Positives = 194/300 (64%), Gaps = 1/300 (0%)
 Frame = +3

Query: 144  MASAPXXXXXXXXXXXXXXXXANPFFWGGANXXXXXXXXXXXXXHXXXXXXXXXXXXXXX 323
            MASAP                 NPFFW  +              H               
Sbjct: 1    MASAPSKLYADDVSLLVVLLDTNPFFWSTS-----ALPFSKFLSHVLAFLNSILVLNQLN 55

Query: 324  XXXXXXTGVNSCSYIYDSSSQTVVDSLESGRMTALSSRILGKLEEFVITDEQLSKEKXXX 503
                  TG  SC Y+Y+SSS +    LE GRM AL +R+L  LEEFVI DEQ  KE    
Sbjct: 56   EVVVIGTGYASCKYLYNSSSYSN-HGLEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKG 114

Query: 504  XXXXXXXXXXXXXX-CYIQRVFRSGSLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSM 680
                           CYIQ+VFRSGSLHPQPRILCLQGSPDGPEQYVA+MNAIFSAQRSM
Sbjct: 115  GTMSSLLSGSLSMALCYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSM 174

Query: 681  VPIDSCVIGSQHSAFLQQASYITGGVYLKPQHLDGLFQYLSTVFATDLQSRSVLELPKPA 860
            VPIDSC IGS +SAFLQQASYITGGVYLKPQ +DGLFQYLSTVF TDL SR+ L+LPK  
Sbjct: 175  VPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSV 234

Query: 861  GVDFRASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGEAHPEAASTPDKKRKTP 1040
            GVDFRASCFCHKKTIDMGY+CSVCLSIFCKHHKKCSTCGSVFGE   E  S    KRKTP
Sbjct: 235  GVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRKTP 294


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
            lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
            ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score =  322 bits (825), Expect = 1e-85
 Identities = 165/240 (68%), Positives = 187/240 (77%), Gaps = 5/240 (2%)
 Frame = +3

Query: 342  TGVNSCSYIYDSSSQTVVDSLESGR--MTALSSRILGKLEEFVITDEQLSKEKXXXXXXX 515
            TG +SC YIYDSS  +   +LES    M AL   +L KLE+FV  DE+LS+E+       
Sbjct: 62   TGYSSCDYIYDSSLTSNHGNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRIP 121

Query: 516  XXXXXXXXXX--CYIQRVFRSGSLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPI 689
                        CYIQRVFRSG LHPQPRILCLQGSPDGPEQYVAVMN+IFSAQR MVPI
Sbjct: 122  SCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPI 181

Query: 690  DSCVIGSQHSAFLQQASYITGGVYLKPQHLDGLFQYLSTVFATDLQSRSVLELPKPAGVD 869
            DSC IG Q+SAFLQQASYITGGV+  P+ LDGLFQYL+T+FATDL SRS ++LPKP GVD
Sbjct: 182  DSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPIGVD 241

Query: 870  FRASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGEAH-PEAASTPDKKRKTPAT 1046
            FRASCFCHKKTIDMGYICSVCLSIFC+HHKKCSTCGSVFG++   +A+S  DKKRK P+T
Sbjct: 242  FRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSVSDKKRKAPST 301


>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
            thaliana] gi|21537277|gb|AAM61618.1| unknown [Arabidopsis
            thaliana] gi|92856638|gb|ABE77412.1| At1g18340
            [Arabidopsis thaliana] gi|332191584|gb|AEE29705.1|
            transcription initiation factor TFIIH subunit H3
            [Arabidopsis thaliana]
          Length = 301

 Score =  320 bits (821), Expect = 4e-85
 Identities = 164/240 (68%), Positives = 185/240 (77%), Gaps = 5/240 (2%)
 Frame = +3

Query: 342  TGVNSCSYIYDSSSQTVVDSLESGR--MTALSSRILGKLEEFVITDEQLSKEKXXXXXXX 515
            TG +SC YIYDSS  +   + ES    M A+   +L KLEEFV  DE+LSKE+       
Sbjct: 62   TGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIP 121

Query: 516  XXXXXXXXXX--CYIQRVFRSGSLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPI 689
                        CYIQRVFRSG LHPQPRILCLQGSPDGPEQYVAVMN+IFSAQR MVPI
Sbjct: 122  SCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPI 181

Query: 690  DSCVIGSQHSAFLQQASYITGGVYLKPQHLDGLFQYLSTVFATDLQSRSVLELPKPAGVD 869
            DSC IG Q+SAFLQQASYITGGV+  P+ LDGLFQYL+T+FATDL SR  ++LPKP GVD
Sbjct: 182  DSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVD 241

Query: 870  FRASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGEAH-PEAASTPDKKRKTPAT 1046
            FRASCFCHKKTIDMGYICSVCLSIFC+HHKKCSTCGSVFG++   +A+S  DKKRK P+T
Sbjct: 242  FRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRKAPST 301