BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00018187
         (1102 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAH66095.1| OSIGBa0114I04.2 [Oryza sativa Indica Group]           121   4e-25
dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa I...   119   1e-24
gb|ABB46832.2| retrotransposon protein, putative, Ty3-gypsy subc...   119   1e-24
gb|AAK92604.1|AC078944_15 Putative retroelement [Oryza sativa Ja...   119   1e-24
gb|ABA97341.1| retrotransposon protein, putative, Ty3-gypsy subc...   119   2e-24

>emb|CAH66095.1| OSIGBa0114I04.2 [Oryza sativa Indica Group]
          Length = 1361

 Score =  121 bits (303), Expect = 4e-25
 Identities = 94/307 (30%), Positives = 140/307 (45%), Gaps = 13/307 (4%)
 Frame = +2

Query: 53  LTRYFDQQLDCLQQISQRLSAVRSQDDSFV---RRVRDFTRLGGVKFSGDGGPLETMRWL 223
           L +   QQ   +  + Q+L   ++Q ++      ++ +F R+    FS    P+E   WL
Sbjct: 25  LAQVLAQQTQLMNMMMQQLQNQQNQGNNHPPPQNKLAEFLRVRPPIFSSTTNPVEAGDWL 84

Query: 224 RDTERVFEQMTLTAVERTALAAHHLTGVAGFWWDEVRAT-VRAEDLAXXXXXXXXXXXXX 400
              E+  + +  T  E+ + A+H L G A  WWD  R     AE +              
Sbjct: 85  HAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPITWIEFTAAFRKTH- 143

Query: 401 XXLPEAVRSRLIEEFSTLTQGGRSVSSYLAQFSELSYYAPYLVDTERKRAERFIRGLDAE 580
             +P  V S   +EF +LTQG RSV+ YL +F+ L+ YAP  V  + +R E+F+ GL+ E
Sbjct: 144 --IPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLEGLNDE 201

Query: 581 LQRIALVALRLGFDAVVDLCLRVEEMDHRTTESTLREAATGGPIRGASDHRR---GADRV 751
           L    +      F  +VD  +R E+  +R TE   R  A     +G +   R   G   +
Sbjct: 202 LSYPLMTGDYHDFQKLVDKAIRQEDKYNR-TEQKKRRIAQFKTQQGNNQKPRLTLGPQSM 260

Query: 752 SPYGGFTE----RRSFTPQFQQYPVLGPALIPLQFAAQQVPV--EAGRVPLVCFQCGEPG 913
            P GG T     +R F        +   AL P+  + QQ P   E G  P+VCF CG+PG
Sbjct: 261 PP-GGSTSVVRPQRQFFNNNAGNNIRNQALRPVAASTQQQPAKREQGSKPVVCFNCGDPG 319

Query: 914 HRACDCP 934
           H A  CP
Sbjct: 320 HYADKCP 326


>dbj|BAH80069.1| putative retrotransposon protein [Oryza sativa Indica Group]
          Length = 1475

 Score =  119 bits (298), Expect = 1e-24
 Identities = 91/306 (29%), Positives = 139/306 (45%), Gaps = 12/306 (3%)
 Frame = +2

Query: 53  LTRYFDQQLDCLQQISQRLSAVRSQDDSFV---RRVRDFTRLGGVKFSGDGGPLETMRWL 223
           L +   QQ   +  + Q+L   ++Q ++      ++ +F R+    FS    P+E   WL
Sbjct: 27  LAQVLVQQTQLMHMMMQQLQNQQNQGNNHAPPQNKLAEFLRVRPPVFSSTTNPVEAGDWL 86

Query: 224 RDTERVFEQMTLTAVERTALAAHHLTGVAGFWWDEVRAT-VRAEDLAXXXXXXXXXXXXX 400
              E+  + +  T  E+ + A+H L G A  WWD  R     AE +              
Sbjct: 87  HAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPITWLEFAAAFRKTH- 145

Query: 401 XXLPEAVRSRLIEEFSTLTQGGRSVSSYLAQFSELSYYAPYLVDTERKRAERFIRGLDAE 580
             +P  V S   +EF +LTQG RSV+ YL +F+ L+ YAP  V  + +R E+F+ GL+ E
Sbjct: 146 --IPSGVMSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLGGLNDE 203

Query: 581 LQRIALVALRLGFDAVVDLCLRVEEMDHRTTESTLREAATGGPIRGASDHRR--GADRVS 754
           L    +V     F  +VD  +R E+  +   E   R  A     +G++   R     +  
Sbjct: 204 LSYPLMVGDYPDFQKLVDKAIRQED-KYNFMEQKKRRMAQFKAQQGSNQKPRLTFGPQSM 262

Query: 755 PYGGFTE----RRSFTPQFQQYPVLGPALIPLQFAAQQVPV--EAGRVPLVCFQCGEPGH 916
           P+GG +     +R F        +   A  P+   AQQ P   E G  P+VCF CG+PGH
Sbjct: 263 PHGGSSSVVRPQRQFFNNNVGNNIRNQAPRPVATPAQQQPAKREQGSKPVVCFNCGDPGH 322

Query: 917 RACDCP 934
            A  CP
Sbjct: 323 YADKCP 328


>gb|ABB46832.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
            Japonica Group]
          Length = 1662

 Score =  119 bits (298), Expect = 1e-24
 Identities = 91/306 (29%), Positives = 138/306 (45%), Gaps = 12/306 (3%)
 Frame = +2

Query: 53   LTRYFDQQLDCLQQISQRLSAVRSQDDSFV---RRVRDFTRLGGVKFSGDGGPLETMRWL 223
            L +   QQ   +  + Q+L   ++Q ++      ++ +F R+    FS    P+E   WL
Sbjct: 295  LAQVLAQQTQLMNMMMQQLQNQQNQGNNHAPPHNKLAEFLRVRPPIFSSTTNPVEAGDWL 354

Query: 224  RDTERVFEQMTLTAVERTALAAHHLTGVAGFWWDEVRAT-VRAEDLAXXXXXXXXXXXXX 400
               E+  + +  T  E+ + A+H L G A  WWD  R     AE +              
Sbjct: 355  HAIEKKLDLLQCTDQEKASFASHQLHGPASEWWDHFRLNRTTAEPITWLEFTAAFRKTH- 413

Query: 401  XXLPEAVRSRLIEEFSTLTQGGRSVSSYLAQFSELSYYAPYLVDTERKRAERFIRGLDAE 580
              +P  V S   +EF +LTQG RSV+ YL +F+ L+ YAP  V  + +R E+F+ GL+ E
Sbjct: 414  --IPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLEGLNDE 471

Query: 581  LQRIALVALRLGFDAVVDLCLRVEEMDHRTTESTLREAATGGPIRGASDHRR--GADRVS 754
            L    +      F  +VD  +R E+  +R  E   R  A     +G +   R     +  
Sbjct: 472  LSYPLMTGDYSDFQKLVDKAIRQEDKYNR-MEQKKRRIAQFKTQQGNNQRPRLTLGPQSM 530

Query: 755  PYGGFTE----RRSFTPQFQQYPVLGPALIPLQFAAQQVPV--EAGRVPLVCFQCGEPGH 916
            P+GG +     +R F        +   AL P+    QQ P   E G  P+VCF CG+PGH
Sbjct: 531  PHGGSSSVVRPQRQFFNNNAGNNIRNQALRPVAAPTQQQPAKREHGSKPVVCFNCGDPGH 590

Query: 917  RACDCP 934
             A  CP
Sbjct: 591  YADKCP 596


>gb|AAK92604.1|AC078944_15 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1571

 Score =  119 bits (298), Expect = 1e-24
 Identities = 91/306 (29%), Positives = 138/306 (45%), Gaps = 12/306 (3%)
 Frame = +2

Query: 53   LTRYFDQQLDCLQQISQRLSAVRSQDDSFV---RRVRDFTRLGGVKFSGDGGPLETMRWL 223
            L +   QQ   +  + Q+L   ++Q ++      ++ +F R+    FS    P+E   WL
Sbjct: 303  LAQVLAQQTQLMNMMMQQLQNQQNQGNNHAPPHNKLAEFLRVRPPIFSSTTNPVEAGDWL 362

Query: 224  RDTERVFEQMTLTAVERTALAAHHLTGVAGFWWDEVRAT-VRAEDLAXXXXXXXXXXXXX 400
               E+  + +  T  E+ + A+H L G A  WWD  R     AE +              
Sbjct: 363  HAIEKKLDLLQCTDQEKASFASHQLHGPASEWWDHFRLNRTTAEPITWLEFTAAFRKTH- 421

Query: 401  XXLPEAVRSRLIEEFSTLTQGGRSVSSYLAQFSELSYYAPYLVDTERKRAERFIRGLDAE 580
              +P  V S   +EF +LTQG RSV+ YL +F+ L+ YAP  V  + +R E+F+ GL+ E
Sbjct: 422  --IPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLEGLNDE 479

Query: 581  LQRIALVALRLGFDAVVDLCLRVEEMDHRTTESTLREAATGGPIRGASDHRR--GADRVS 754
            L    +      F  +VD  +R E+  +R  E   R  A     +G +   R     +  
Sbjct: 480  LSYPLMTGDYSDFQKLVDKAIRQEDKYNR-MEQKKRRIAQFKTQQGNNQRPRLTLGPQSM 538

Query: 755  PYGGFTE----RRSFTPQFQQYPVLGPALIPLQFAAQQVPV--EAGRVPLVCFQCGEPGH 916
            P+GG +     +R F        +   AL P+    QQ P   E G  P+VCF CG+PGH
Sbjct: 539  PHGGSSSVVRPQRQFFNNNAGNNIRNQALRPVAAPTQQQPAKREHGSKPVVCFNCGDPGH 598

Query: 917  RACDCP 934
             A  CP
Sbjct: 599  YADKCP 604


>gb|ABA97341.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1325

 Score =  119 bits (297), Expect = 2e-24
 Identities = 89/305 (29%), Positives = 135/305 (44%), Gaps = 11/305 (3%)
 Frame = +2

Query: 53  LTRYFDQQLDCLQQISQRLSAVRSQDDSFV---RRVRDFTRLGGVKFSGDGGPLETMRWL 223
           L +   QQ   +  + Q+L   ++Q ++      ++ +F R+    FS    P+E   WL
Sbjct: 24  LAQVLAQQTQLMNMMMQQLQNQQNQGNNHAPPQNKLAEFLRVRPPIFSSTTNPVEAGDWL 83

Query: 224 RDTERVFEQMTLTAVERTALAAHHLTGVAGFWWDEVRAT-VRAEDLAXXXXXXXXXXXXX 400
              E+  + +  T  E+ + A+H L G A  WWD  R     AE +              
Sbjct: 84  HAIEKKLDLLQCTDQEKVSFASHQLHGPASEWWDHFRLNRTTAEPITWLEFTAAFRKTH- 142

Query: 401 XXLPEAVRSRLIEEFSTLTQGGRSVSSYLAQFSELSYYAPYLVDTERKRAERFIRGLDAE 580
             +P  V S   +EF +LTQG RSV+ YL +F+ L+ YAP  V  + +R E+F+ GL+ E
Sbjct: 143 --IPSGVVSLKKKEFRSLTQGSRSVTEYLHEFNRLARYAPEDVRNDEERQEKFLEGLNDE 200

Query: 581 LQRIALVALRLGFDAVVDLCLRVEEMDHRTTESTLREAA-TGGPIRGASDHRRGADRVSP 757
           L    +      F  +VD  +R E+  +R  +   R A     P            +  P
Sbjct: 201 LSYPLMAGDYPDFQKLVDKAIRQEDKYNRMEQKKRRIAQFKTQPGNNQRPRLTLGPQSMP 260

Query: 758 YGGFTE----RRSFTPQFQQYPVLGPALIPLQFAAQQVPV--EAGRVPLVCFQCGEPGHR 919
           +GG +     RR F        +   A  P+  + QQ P   E G  P+VCF CG+PGH 
Sbjct: 261 HGGSSSVVRPRRQFFNNNAGNNIRNQAPRPVAVSTQQQPAKREQGSKPVVCFNCGDPGHY 320

Query: 920 ACDCP 934
           A  CP
Sbjct: 321 ADKCP 325