BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00018048
         (1377 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                603   e-170
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              521   e-145
gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-...   508   e-141
emb|CAN71553.1| hypothetical protein VITISV_034738 [Vitis vinifera]   508   e-141
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc...   508   e-141

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  603 bits (1554), Expect = e-170
 Identities = 289/453 (63%), Positives = 366/453 (80%)
 Frame = +2

Query: 17   PTCYSQASKYPQWRQAMIEEFNALQQTGTWTLVPPHSSQKPVGCKWVFKVKYKADGSVDR 196
            P+ + QASK   W +AM  EF ALQ TGTW LVP HS+   VGCKWVFKVK+K DG+++R
Sbjct: 1149 PSTFLQASKSSHWMEAMQFEFQALQSTGTWELVPNHSTYNIVGCKWVFKVKHKPDGTIER 1208

Query: 197  YKARLVAKGYHQLSGIDYTETFSPVAKPSTIRLVLSIAVQFNWCIRQLDVSNAFLHGHLK 376
            YKARLVAKG+HQ  G+D++ETFSPVAKP+TIR++LSIAV + W I QLDVSNAFLHGHLK
Sbjct: 1209 YKARLVAKGFHQQEGLDFSETFSPVAKPTTIRILLSIAVSYYWFIHQLDVSNAFLHGHLK 1268

Query: 377  EEVFMLQPPGFIDQEYPHHVCKLLKSLYGLKQAPRAWYEALQSALLQLGFNQSKSDYSLF 556
            E+V+M+QPPGF+D   PHHVCKL KSLYGLKQAPRAWYEA  +A+L LGF+ S SD SLF
Sbjct: 1269 EDVYMVQPPGFVDPSKPHHVCKLRKSLYGLKQAPRAWYEAFYTAILSLGFSSSHSDTSLF 1328

Query: 557  TKKDSAATTYILVYVDDXXXXXXXXXHLHELISQLGTSFALKDLGNLHYFLGLEVFRTEK 736
             K+D+ + T+ILVYVDD             +ISQL T F +KDLG+++YFLG+EV ++++
Sbjct: 1329 IKRDT-SITFILVYVDDIIITGSSVTECQSIISQLQTMFPVKDLGDINYFLGIEVHKSDQ 1387

Query: 737  GIFLTQSKYALDLLKKAKMETSKPCSTPCSSNFKLDSTSGELLADGSEYRSLVGALQYLT 916
            G+ L Q+KYALDLLKK  M  +KPC+TP S++ KLD  SG LL+D + YRS VGALQYLT
Sbjct: 1388 GLLLHQAKYALDLLKKTDMLGAKPCATPVSTS-KLDH-SGTLLSDPTSYRSTVGALQYLT 1445

Query: 917  WTRPDLSFSVNQVCQFLHSPRTSHLIAVKRILRFVKATLNHGIYITKGSPTLTAYTDADW 1096
            WTRPDL+F+VNQVCQ++HSP+T HL AVKRILR++K T++ G++ TKGS  LTA++DADW
Sbjct: 1446 WTRPDLAFAVNQVCQYMHSPQTIHLQAVKRILRYLKGTVDLGLWFTKGSQCLTAWSDADW 1505

Query: 1097 AGCPIDRRSTSGFCIYFGSNPISWSSKKQHTIARSSTEAEYRSLSHTAAEIIWLCQLLQD 1276
            AGCP+DRRSTSG+C++ GSN ISWS+KKQ T+ARSSTEAEYRSL++TAAEI W+C++L D
Sbjct: 1506 AGCPVDRRSTSGYCVFLGSNLISWSAKKQATVARSSTEAEYRSLANTAAEITWVCKILHD 1565

Query: 1277 LFVYIPSPPLVWCDNISAIAISTNPVYHARTKH 1375
            +   +   P+++CDN S IA++ NPV+HARTKH
Sbjct: 1566 ISFPLLKTPVIYCDNKSVIALAFNPVFHARTKH 1598


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  521 bits (1341), Expect = e-145
 Identities = 255/453 (56%), Positives = 324/453 (71%)
 Frame = +2

Query: 17   PTCYSQASKYPQWRQAMIEEFNALQQTGTWTLVPPHSSQKPVGCKWVFKVKYKADGSVDR 196
            PTCY+QA+KYP+WR+AM  EF ALQQ GTW LVPP S    +  KWVF++K ++DGSV+R
Sbjct: 874  PTCYTQAAKYPEWREAMDHEFKALQQAGTWFLVPPSSLMNILPNKWVFRIKKRSDGSVER 933

Query: 197  YKARLVAKGYHQLSGIDYTETFSPVAKPSTIRLVLSIAVQFNWCIRQLDVSNAFLHGHLK 376
            YKARLVA G+HQ  G+DYTETFSPV K STIRLVL++AV   W IRQLDV N FLHG+L 
Sbjct: 934  YKARLVANGFHQQEGLDYTETFSPVVKHSTIRLVLALAVSHRWPIRQLDVQNVFLHGYLN 993

Query: 377  EEVFMLQPPGFIDQEYPHHVCKLLKSLYGLKQAPRAWYEALQSALLQLGFNQSKSDYSLF 556
            E+++M Q  GF+D ++P HVCKL +SLYGLKQAPRAW+      L +LGF +S++DYS+F
Sbjct: 994  EDIYMKQHVGFVDPKFPQHVCKLRRSLYGLKQAPRAWFRCFSDYLEELGFLESRADYSMF 1053

Query: 557  TKKDSAATTYILVYVDDXXXXXXXXXHLHELISQLGTSFALKDLGNLHYFLGLEVFRTEK 736
            T  +      +L+YVDD         H+  LI  L + F++KDLG++HYFLG+E      
Sbjct: 1054 TFNNRGIYIILLIYVDDILITGNNSSHISHLIHNLNSLFSMKDLGSVHYFLGIETVYNGD 1113

Query: 737  GIFLTQSKYALDLLKKAKMETSKPCSTPCSSNFKLDSTSGELLADGSEYRSLVGALQYLT 916
             + LTQ KY +DLLKK K+  S+P  TP  S  KL    G  L D SEYRS+VGALQYLT
Sbjct: 1114 HLHLTQHKYIVDLLKKTKLHDSRPYPTPVLSGKKLSVYDGVKLEDPSEYRSIVGALQYLT 1173

Query: 917  WTRPDLSFSVNQVCQFLHSPRTSHLIAVKRILRFVKATLNHGIYITKGSPTLTAYTDADW 1096
             TRPD+ ++VNQVCQF+HSP   H +AVKRILR++K TLNHG+    GS  L AY+DAD+
Sbjct: 1174 LTRPDICYAVNQVCQFMHSPTNVHWVAVKRILRYLKYTLNHGLVYQPGSHKLVAYSDADY 1233

Query: 1097 AGCPIDRRSTSGFCIYFGSNPISWSSKKQHTIARSSTEAEYRSLSHTAAEIIWLCQLLQD 1276
            AG P DR ST GFC          SSKK  T++RSS EAEYR L++TAAE+ WL  L +D
Sbjct: 1234 AGDPDDRHSTGGFC----------SSKKHKTVSRSSAEAEYRQLAYTAAELSWLRSLFRD 1283

Query: 1277 LFVYIPSPPLVWCDNISAIAISTNPVYHARTKH 1375
            L V++ S P +WCDNIS+I++++NPV+H+RTKH
Sbjct: 1284 LNVFL-SCPRIWCDNISSISLASNPVFHSRTKH 1315


>gb|AAX96193.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  508 bits (1309), Expect = e-141
 Identities = 256/461 (55%), Positives = 322/461 (69%), Gaps = 3/461 (0%)
 Frame = +2

Query: 2    TADIVPTCYSQASKYPQWRQAMIEEFNALQQTGTWTLVPPHSSQKPVGCKWVFKVKYKAD 181
            TA   PT   +A K   W+ AM  E++AL +  TW LVPP   +  +GCKWV+K+K KAD
Sbjct: 662  TASGEPTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKAD 721

Query: 182  GSVDRYKARLVAKGYHQLSGIDYTETFSPVAKPSTIRLVLSIAVQFNWCIRQLDVSNAFL 361
            G++DRYKARLVAKG+ Q  GIDY +TFSPV K +TIR++LS+AV   W +RQLDV NAFL
Sbjct: 722  GTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFL 781

Query: 362  HGHLKEEVFMLQPPGFIDQEYPHHVCKLLKSLYGLKQAPRAWYEALQSALLQLGFNQSKS 541
            HG+L+EEV+MLQPPGF D   PHHVCKL K+LYGLKQAPRAW+  L   L+ LGF  SK+
Sbjct: 782  HGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKA 841

Query: 542  DYSLFTKKDSAATTYILVYVDDXXXXXXXXXHLHELISQLGTSFALKDLGNLHYFLGLEV 721
            D SLF       T ++LVYVDD             L+  L   FALKDLG LHYFLG+EV
Sbjct: 842  DTSLFFLNKGDITMFVLVYVDDIIVASSSEKATAALLQNLKGEFALKDLGELHYFLGIEV 901

Query: 722  FRTEKGIFLTQSKYALDLLKKAKMETSKPCSTPCSSNFKLDSTSGELLA--DGSEYRSLV 895
             + + GI L Q KYA DLLKK  M   KP +TP S + KL    G LL   D S YRS+V
Sbjct: 902  SKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVV 961

Query: 896  GALQYLTWTRPDLSFSVNQVCQFLHSPRTSHLIAVKRILRFVKATLNHGIYITK-GSPTL 1072
            GALQYLT TRPD++FSVN+VCQFLH+P T H IAVKRILR++K     G+ I K GS  +
Sbjct: 962  GALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIHKSGSTLV 1021

Query: 1073 TAYTDADWAGCPIDRRSTSGFCIYFGSNPISWSSKKQHTIARSSTEAEYRSLSHTAAEII 1252
            + ++DADWAGC  DRRST GF I+ GSN +SW+++KQ T++RSSTE+EY+++++  AEI+
Sbjct: 1022 SGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESEYKAIANATAEIM 1081

Query: 1253 WLCQLLQDLFVYIPSPPLVWCDNISAIAISTNPVYHARTKH 1375
            W+  LL +L +  P    +WCDN+ A  +S NPV+HARTKH
Sbjct: 1082 WVQTLLAELEIKSPKAAKIWCDNLGAKYLSANPVFHARTKH 1122


>emb|CAN71553.1| hypothetical protein VITISV_034738 [Vitis vinifera]
          Length = 1312

 Score =  508 bits (1308), Expect = e-141
 Identities = 252/458 (55%), Positives = 328/458 (71%), Gaps = 3/458 (0%)
 Frame = +2

Query: 11   IVPTCYSQASKYPQWRQAMIEEFNALQQTGTWTLVPPHSSQKPVGCKWVFKVKYKADGSV 190
            I P    QA + P W+ AM +E+ AL +  TW+LVPP S+ K +GCKWVFK+K+K +GS+
Sbjct: 797  IEPRTVKQALQDPNWKVAMEQEYQALLKNQTWSLVPPPSNAKIIGCKWVFKLKHKPNGSI 856

Query: 191  DRYKARLVAKGYHQLSGIDYTETFSPVAKPSTIRLVLSIAVQFNWCIRQLDVSNAFLHGH 370
            DRYKARLVA+G+HQ  GID+ ETFSPV KP TIRLVLSIAV  NW I+QLDV NAFL+G 
Sbjct: 857  DRYKARLVAQGFHQTYGIDFFETFSPVVKPCTIRLVLSIAVSSNWPIKQLDVHNAFLNGD 916

Query: 371  LKEEVFMLQPPGFIDQEYPHHVCKLLKSLYGLKQAPRAWYEALQSALLQLGFNQSKSDYS 550
            L+E+VFM+QPPGF D   P HVC+L K+LYGLKQAPRAW+  L S LLQ+GF  S++D S
Sbjct: 917  LQEQVFMMQPPGFEDNSCPTHVCRLQKALYGLKQAPRAWFHKLSSFLLQIGFQCSRADAS 976

Query: 551  LFTKKDSAATTYILVYVDDXXXXXXXXXHLHELISQLGTSFALKDLGNLHYFLGLEVFRT 730
            LF    ++    +L+YVDD          +H++ISQL + FAL+DLG++ YFLG+EV R 
Sbjct: 977  LFYFHSASDIIILLIYVDDILITGSNPSRVHQIISQLSSHFALRDLGDISYFLGIEVTRR 1036

Query: 731  EKGIFLTQSKYALDLLKKAKMETSKPCSTPCSSNFKLDSTSGELLA--DGSEYRSLVGAL 904
               + L Q +Y   LL++A +  +K  STP +    L +  GE L+  D + YRSLVGAL
Sbjct: 1037 SHALHLNQQRYIHQLLERANLHEAKSASTPGALGKLLSAADGEPLSALDATHYRSLVGAL 1096

Query: 905  QYLTWTRPDLSFSVNQVCQFLHSPRTSHLIAVKRILRFVKATLNHGIYI-TKGSPTLTAY 1081
            QY+T TRP++SF+VN+ CQ++  P TSHL A KRILR++K T  HGI I    S +L  Y
Sbjct: 1097 QYITLTRPEISFAVNRACQYMARPTTSHLQAAKRILRYLKGTATHGISIHASPSLSLQGY 1156

Query: 1082 TDADWAGCPIDRRSTSGFCIYFGSNPISWSSKKQHTIARSSTEAEYRSLSHTAAEIIWLC 1261
            TDADWA CP DRRSTSGFC++FG+N ISWSS KQ  ++RSS E+EYR+L+  AAE+ W+ 
Sbjct: 1157 TDADWASCPDDRRSTSGFCLFFGTNLISWSSTKQRVVSRSSAESEYRALALLAAEVSWVQ 1216

Query: 1262 QLLQDLFVYIPSPPLVWCDNISAIAISTNPVYHARTKH 1375
             LL++L +     PL+WCDNISA A++ N V+HAR+KH
Sbjct: 1217 FLLKELCIPQQDTPLIWCDNISATALAANSVFHARSKH 1254


>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1460

 Score =  508 bits (1307), Expect = e-141
 Identities = 256/461 (55%), Positives = 321/461 (69%), Gaps = 3/461 (0%)
 Frame = +2

Query: 2    TADIVPTCYSQASKYPQWRQAMIEEFNALQQTGTWTLVPPHSSQKPVGCKWVFKVKYKAD 181
            TA   PT   +A K   W+ AM  E++AL +  TW LVPP   +  +GCKWV+K+K KAD
Sbjct: 940  TASGEPTNDLEALKDKNWKLAMDSEYDALVKNKTWHLVPPQRGRNIIGCKWVYKIKRKAD 999

Query: 182  GSVDRYKARLVAKGYHQLSGIDYTETFSPVAKPSTIRLVLSIAVQFNWCIRQLDVSNAFL 361
            G++DRYKARLVAKG+ Q  GIDY +TFSPV K +TIR++LS+AV   W +RQLDV NAFL
Sbjct: 1000 GTLDRYKARLVAKGFKQRYGIDYEDTFSPVVKAATIRIILSLAVSKGWSLRQLDVQNAFL 1059

Query: 362  HGHLKEEVFMLQPPGFIDQEYPHHVCKLLKSLYGLKQAPRAWYEALQSALLQLGFNQSKS 541
            HG+L+EEV+MLQPPGF D   PHHVCKL K+LYGLKQAPRAW+  L   L+ LGF  SK 
Sbjct: 1060 HGYLEEEVYMLQPPGFEDPTKPHHVCKLDKALYGLKQAPRAWFSRLSKKLMDLGFKGSKP 1119

Query: 542  DYSLFTKKDSAATTYILVYVDDXXXXXXXXXHLHELISQLGTSFALKDLGNLHYFLGLEV 721
            D SLF       T ++LVYVDD             L+  L   FALKDLG LHYFLG+EV
Sbjct: 1120 DTSLFFLNKGDITMFVLVYVDDIIVASSSEKATAALLQDLKGEFALKDLGELHYFLGIEV 1179

Query: 722  FRTEKGIFLTQSKYALDLLKKAKMETSKPCSTPCSSNFKLDSTSGELLA--DGSEYRSLV 895
             + + GI L Q KYA DLLKK  M   KP +TP S + KL    G LL   D S YRS+V
Sbjct: 1180 SKVQNGIVLNQDKYANDLLKKVGMIDCKPANTPLSVSEKLSLHEGSLLGPEDASHYRSVV 1239

Query: 896  GALQYLTWTRPDLSFSVNQVCQFLHSPRTSHLIAVKRILRFVKATLNHGIYITK-GSPTL 1072
            GALQYLT TRPD++FSVN+VCQFLH+P T H IAVKRILR++K     G+ I K GS  +
Sbjct: 1240 GALQYLTLTRPDIAFSVNKVCQFLHAPTTVHWIAVKRILRYLKQCTRLGLEIHKSGSTLV 1299

Query: 1073 TAYTDADWAGCPIDRRSTSGFCIYFGSNPISWSSKKQHTIARSSTEAEYRSLSHTAAEII 1252
            + ++DADWAGC  DRRST GF I+ GSN +SW+++KQ T++RSSTE+EY+++++  AEI+
Sbjct: 1300 SGFSDADWAGCLDDRRSTGGFAIFLGSNLVSWNARKQATVSRSSTESEYKAIANATAEIM 1359

Query: 1253 WLCQLLQDLFVYIPSPPLVWCDNISAIAISTNPVYHARTKH 1375
            W+  LL +L +  P    +WCDN+ A  +S NPV+HARTKH
Sbjct: 1360 WVQTLLAELEIKSPKAAKIWCDNLGAKYLSANPVFHARTKH 1400