BLASTX nr result

ID: Cimicifuga21_contig00018023 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00018023
         (1159 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002300362.1| multidrug resistance protein ABC transporter...    63   2e-16
ref|XP_003634753.1| PREDICTED: ABC transporter C family member 3...    72   3e-10
ref|XP_003519622.1| PREDICTED: ABC transporter C family member 3...    71   5e-10
ref|XP_003518544.1| PREDICTED: ABC transporter C family member 3...    71   5e-10
ref|XP_003634755.1| PREDICTED: ABC transporter C family member 3...    70   1e-09

>ref|XP_002300362.1| multidrug resistance protein ABC transporter family [Populus
           trichocarpa] gi|222847620|gb|EEE85167.1| multidrug
           resistance protein ABC transporter family [Populus
           trichocarpa]
          Length = 1488

 Score = 63.2 bits (152), Expect(2) = 2e-16
 Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 12/103 (11%)
 Frame = +3

Query: 576 LLIHGFSSAFHXXXXXXXSVYWVFKNLNN-----------KNENRSLYHKITVFSCVALS 722
           + + GF+++ H        V +V K L              N  R  ++K T+F  + +S
Sbjct: 12  IFLRGFTASLHLVLLLALFVSFVLKKLRVGDGVQGSKERFSNNKRFFFYKQTLFCSLGVS 71

Query: 723 ICHLLLCVVNYFYFCTV-WSQDKIVTQLDLVLTTLAWLAISAY 848
             +L+L +V+YFY+ T  WS DK+VT LD VLT L+W A+S Y
Sbjct: 72  SLNLVLSLVSYFYWYTNGWSDDKLVTLLDFVLTALSWAALSVY 114



 Score = 50.1 bits (118), Expect(2) = 2e-16
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
 Frame = +2

Query: 968  YYSRPLKFPIFLRIWWVFFFIMSCYCLVSDL----NHHFLPTHLWIKDVLSFVMGFIFLY 1135
            + S   KFP  LR+WW  FF +SCYCLV D      H        + D++S    F   Y
Sbjct: 120  FNSGETKFPFLLRVWWALFFSISCYCLVVDFLVFHKHGSFEIQYLVSDLVSVFTAFFLCY 179

Query: 1136 YG 1141
             G
Sbjct: 180  VG 181


>ref|XP_003634753.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera]
          Length = 1488

 Score = 72.0 bits (175), Expect = 3e-10
 Identities = 39/97 (40%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
 Frame = +3

Query: 576 LLIHGFSSAFHXXXXXXXSVYWVFKNLN-----NKNENRSLYHKITVFSCVALSICHLLL 740
           + +  FS++ H        V WV K +N     N    R LY+K T   C  LS+ +  L
Sbjct: 14  VFLRAFSASLHLVLLLLLFVSWVCKRINGGALENYKRTRFLYYKQTFACCQGLSLLNFFL 73

Query: 741 CVVNYFY-FCTVWSQDKIVTQLDLVLTTLAWLAISAY 848
           C +NYFY +   WS +K+VT LDLVL TL+W A+S Y
Sbjct: 74  CFLNYFYWYRNGWSGEKLVTLLDLVLRTLSWGAVSVY 110


>ref|XP_003519622.1| PREDICTED: ABC transporter C family member 3-like [Glycine max]
          Length = 1493

 Score = 71.2 bits (173), Expect = 5e-10
 Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
 Frame = +3

Query: 546 YIQRMVLYLFLLIHGFSSAFHXXXXXXXSVYWVFKNL-------NNKNENRSLYHKITVF 704
           ++   VL   + +HG S   H        + WV++         + K  N SL+ K TVF
Sbjct: 8   HLSTAVLLKPIFLHGLSGFLHLLLLVAVVLSWVWRKFTAGPGDESKKKPNNSLF-KTTVF 66

Query: 705 SCVALSICHLLLCVVNYFYFCTV-WSQDKIVTQLDLVLTTLAW 830
           S +ALS  + LLC +NYFY+ T  WS++K+VT LDL L TLAW
Sbjct: 67  SSLALSAFNFLLCFINYFYWYTSGWSEEKLVTLLDLALKTLAW 109


>ref|XP_003518544.1| PREDICTED: ABC transporter C family member 3-like [Glycine max]
          Length = 2054

 Score = 71.2 bits (173), Expect = 5e-10
 Identities = 41/103 (39%), Positives = 57/103 (55%), Gaps = 8/103 (7%)
 Frame = +3

Query: 546 YIQRMVLYLFLLIHGFSSAFHXXXXXXXSVYWVFKNL-------NNKNENRSLYHKITVF 704
           ++   VL   + +HG S   H        + WV++         + K  N SL+ K TVF
Sbjct: 569 HLSTAVLLKPIFLHGLSGFLHLLLLVAVVLSWVWRKFTAGPGDESKKKPNNSLF-KTTVF 627

Query: 705 SCVALSICHLLLCVVNYFYFCTV-WSQDKIVTQLDLVLTTLAW 830
           S +ALS  + LLC +NYFY+ T  WS++K+VT LDL L TLAW
Sbjct: 628 SSLALSAFNFLLCFINYFYWYTSGWSEEKLVTLLDLALKTLAW 670


>ref|XP_003634755.1| PREDICTED: ABC transporter C family member 3-like [Vitis vinifera]
          Length = 1488

 Score = 70.1 bits (170), Expect = 1e-09
 Identities = 39/92 (42%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
 Frame = +3

Query: 591 FSSAFHXXXXXXXSVYWVFKNLN-----NKNENRSLYHKITVFSCVALSICHLLLCVVNY 755
           FS++ H        V WV K +      N    R LY+K T   C  LS+ +LLLC +NY
Sbjct: 19  FSASLHLVLLLLLFVSWVCKRIKGGAPENCKRTRFLYYKQTFACCQGLSLLNLLLCFLNY 78

Query: 756 FY-FCTVWSQDKIVTQLDLVLTTLAWLAISAY 848
           FY +   WS +++VT LDLVL TLAW A+  Y
Sbjct: 79  FYWYRNGWSDERLVTLLDLVLRTLAWGAVCVY 110


Top