BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00017890
         (457 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   120   9e-26
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   116   2e-24
emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis hall...   114   6e-24
ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis ...   113   2e-23
gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thali...   112   2e-23

>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
           gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
           [Populus trichocarpa]
          Length = 1133

 Score =  120 bits (302), Expect = 9e-26
 Identities = 65/133 (48%), Positives = 83/133 (62%)
 Frame = -3

Query: 401 TKTVHIYGFPINVTVEEVKAYLEQCTGNGTVQALKIGQSQNKGLKARSFAMVQFTTTECV 222
           +KTV + GFP + T   V+ +LE  TG GTV+ALKI + +  G  AR +A+VQFTTT   
Sbjct: 2   SKTVKVSGFPSSTTAGAVQVFLESHTGGGTVEALKIREIRTGG--ARKYAIVQFTTTRAA 59

Query: 221 ETISSLINRRLRYGVYFLKIWDMKRDIIPKPRASMLNLEVTAMHFGNQVSKEMFLGLWKG 42
           E I SL N RL YG  +L    M RDIIP+PR+ +  +E   +HFG Q SKE F  +W G
Sbjct: 60  EQIISLANPRLWYGHSYLNARPMDRDIIPQPRSFLHTMESVTLHFGYQTSKEKFSAVWSG 119

Query: 41  MGVVVNIGVGRRK 3
             V VN G+G RK
Sbjct: 120 NNVSVNFGLGMRK 132


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score =  116 bits (290), Expect = 2e-24
 Identities = 61/135 (45%), Positives = 85/135 (62%), Gaps = 3/135 (2%)
 Frame = -3

Query: 398 KTVHIYGFPINVTVEEVKAYLEQCTGNGTVQALKIGQSQNKGLKARSFAMVQFTTTECVE 219
           KT+ +YGFP +V V +VK ++EQ TG GTV A+K+     KG   R+FA++QFTT     
Sbjct: 3   KTIELYGFPTSVNVSDVKTFVEQYTGEGTVFAIKL--RHGKGRVPRAFAIIQFTTANSAT 60

Query: 218 TISSLIN---RRLRYGVYFLKIWDMKRDIIPKPRASMLNLEVTAMHFGNQVSKEMFLGLW 48
           ++ S  N   R LRYG  +LK  +M+RDI+P+PR  + +L+   + FG Q+SK  F  LW
Sbjct: 61  SMMSRANNILRTLRYGTSYLKAREMERDIVPRPRVFLHSLDDVKLSFGCQISKGRFSVLW 120

Query: 47  KGMGVVVNIGVGRRK 3
           K   V+VN G G RK
Sbjct: 121 KKQDVIVNFGSGMRK 135


>emb|CCD74482.1| RNA-dependent RNA polymerase 1 [Arabidopsis halleri subsp. halleri]
          Length = 1107

 Score =  114 bits (286), Expect = 6e-24
 Identities = 60/133 (45%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
 Frame = -3

Query: 398 KTVHIYGFPINVTVEEVKAYLEQCTGNGTVQALKIGQSQNKGLKARSFAMVQFTTTECV- 222
           KT+ ++GFP  V+ EEVK +LE+ TG+GTV A+K+ Q +  G   R FA+VQFT      
Sbjct: 3   KTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVFAIVQFTNERYAR 60

Query: 221 ETISSLINRRLRYGVYFLKIWDMKRDIIPKPRASMLNLEVTAMHFGNQVSKEMFLGLWKG 42
           + I+    RRL YG  +L  +++ +DI+PKPRAS+ N+    M+FG QVS + FL LW  
Sbjct: 61  QIITGAAERRLYYGRSYLNAFEVDQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSA 120

Query: 41  MGVVVNIGVGRRK 3
             V V+ G+G RK
Sbjct: 121 QDVCVSFGIGMRK 133


>ref|XP_002870481.1| RNA-dependent RNA polymerase 1 [Arabidopsis lyrata subsp. lyrata]
           gi|297316317|gb|EFH46740.1| RNA-dependent RNA polymerase
           1 [Arabidopsis lyrata subsp. lyrata]
          Length = 1097

 Score =  113 bits (282), Expect = 2e-23
 Identities = 59/133 (44%), Positives = 85/133 (63%), Gaps = 1/133 (0%)
 Frame = -3

Query: 398 KTVHIYGFPINVTVEEVKAYLEQCTGNGTVQALKIGQSQNKGLKARSFAMVQFTTTECV- 222
           KT+ ++GFP  V+ EEVK +LE+ TG+GTV A+K+ Q +  G   R FA+VQFT      
Sbjct: 3   KTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVFAIVQFTNERYAR 60

Query: 221 ETISSLINRRLRYGVYFLKIWDMKRDIIPKPRASMLNLEVTAMHFGNQVSKEMFLGLWKG 42
           + I+    R L YG  +L  +++++DI+PKPRAS+ N+    M+FG QVS + FL LW  
Sbjct: 61  QIITGAAERSLYYGRSYLNAFEVEQDIVPKPRASLHNISGLKMYFGCQVSTQKFLTLWSA 120

Query: 41  MGVVVNIGVGRRK 3
             V V+ G+G RK
Sbjct: 121 QDVCVSFGIGMRK 133


>gb|AAN64409.1| RNA-dependent RNA polymerase 1 [Arabidopsis thaliana]
          Length = 1107

 Score =  112 bits (281), Expect = 2e-23
 Identities = 58/132 (43%), Positives = 84/132 (63%)
 Frame = -3

Query: 398 KTVHIYGFPINVTVEEVKAYLEQCTGNGTVQALKIGQSQNKGLKARSFAMVQFTTTECVE 219
           KT+ ++GFP  V+ EEVK +LE+ TG+GTV A+K+ Q +  G   R +A+VQFT+     
Sbjct: 3   KTIQVFGFPNGVSAEEVKKFLERLTGSGTVYAIKVRQPKKGG--PRVYAIVQFTSERHTR 60

Query: 218 TISSLINRRLRYGVYFLKIWDMKRDIIPKPRASMLNLEVTAMHFGNQVSKEMFLGLWKGM 39
            I +    RL YG  +LK +++++DI+PKPRAS+  +    M FG QVS + FL LW   
Sbjct: 61  LIITAAAERLYYGRSYLKAFEVEQDIVPKPRASLHTISGLKMFFGCQVSTKKFLTLWSAQ 120

Query: 38  GVVVNIGVGRRK 3
            V V+ G+G RK
Sbjct: 121 DVCVSFGIGMRK 132