BLASTX nr result
ID: Cimicifuga21_contig00017825
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00017825
(1029 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containi... 83 1e-13
ref|XP_002532584.1| pentatricopeptide repeat-containing protein,... 82 2e-13
ref|XP_002451457.1| hypothetical protein SORBIDRAFT_04g002270 [S... 81 4e-13
dbj|BAK07990.1| predicted protein [Hordeum vulgare subsp. vulgare] 80 6e-13
ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 80 8e-13
>ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71210-like
[Vitis vinifera]
Length = 881
Score = 82.8 bits (203), Expect = 1e-13
Identities = 41/82 (50%), Positives = 55/82 (67%)
Frame = +1
Query: 1 QFFPPNIFTYNMLLKLSMTHGLDGFTDLFHKIRKKGYHPNNLTYDIIVRGLCKLGRRDEA 180
Q FP +++TYNMLL+ +D +LF++I +KGY PN TYDI+V GL K GR EA
Sbjct: 800 QCFPLDLYTYNMLLRRLTRSDMDLALELFNRICQKGYEPNRWTYDILVHGLFKHGRTSEA 859
Query: 181 MRWIDEMHQLGFELTERTQQLI 246
+W++EM GFE TE T+ LI
Sbjct: 860 NKWVEEMFCKGFEPTEATKLLI 881
Score = 55.5 bits (132), Expect(3) = 2e-11
Identities = 25/50 (50%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Frame = +3
Query: 657 IRKKGYKPNCLSYDVFVHGLCKHSK-EEGRRWIDEMHCMGFNLTGRTKQL 803
I +KGY+PN +YD+ VHGL KH + E +W++EM C GF T TK L
Sbjct: 831 ICQKGYEPNRWTYDILVHGLFKHGRTSEANKWVEEMFCKGFEPTEATKLL 880
Score = 35.8 bits (81), Expect(3) = 2e-11
Identities = 15/24 (62%), Positives = 20/24 (83%)
Frame = +1
Query: 544 LNDVI*QCFQLDIFMYNMLLRRLS 615
L +V+ QCF LD++ YNMLLRRL+
Sbjct: 794 LEEVMQQCFPLDLYTYNMLLRRLT 817
Score = 23.9 bits (50), Expect(3) = 2e-11
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 359 RHPGSFIGKAPSLHSFKCQRTF 424
RH SFIG LHS K F
Sbjct: 733 RHVSSFIGNVLLLHSLKTPELF 754
>ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527693|gb|EEF29801.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 895
Score = 82.0 bits (201), Expect = 2e-13
Identities = 39/82 (47%), Positives = 55/82 (67%)
Frame = +1
Query: 1 QFFPPNIFTYNMLLKLSMTHGLDGFTDLFHKIRKKGYHPNNLTYDIIVRGLCKLGRRDEA 180
Q FP +++TYNML++ +D +LF +I +KGY PN+ TYDI+V GL K GR EA
Sbjct: 814 QCFPLDLYTYNMLMRRLSMSNIDHARELFDRICQKGYEPNHWTYDILVHGLFKNGRIGEA 873
Query: 181 MRWIDEMHQLGFELTERTQQLI 246
RW+DEM + GF + RT+ L+
Sbjct: 874 RRWVDEMFRKGFSPSGRTKSLM 895
Score = 57.0 bits (136), Expect(2) = 4e-12
Identities = 27/50 (54%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
Frame = +3
Query: 657 IRKKGYKPNCLSYDVFVHGLCKHSK-EEGRRWIDEMHCMGFNLTGRTKQL 803
I +KGY+PN +YD+ VHGL K+ + E RRW+DEM GF+ +GRTK L
Sbjct: 845 ICQKGYEPNHWTYDILVHGLFKNGRIGEARRWVDEMFRKGFSPSGRTKSL 894
Score = 40.8 bits (94), Expect(2) = 4e-12
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = +1
Query: 538 EDLNDVI*QCFQLDIFMYNMLLRRLSMT 621
++L +VI QCF LD++ YNML+RRLSM+
Sbjct: 806 DNLEEVIEQCFPLDLYTYNMLMRRLSMS 833
>ref|XP_002451457.1| hypothetical protein SORBIDRAFT_04g002270 [Sorghum bicolor]
gi|241931288|gb|EES04433.1| hypothetical protein
SORBIDRAFT_04g002270 [Sorghum bicolor]
Length = 917
Score = 81.3 bits (199), Expect = 4e-13
Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 QFFPPNIFTYNMLLK-LSMTHGLDGFTDLFHKIRKKGYHPNNLTYDIIVRGLCKLGRRDE 177
++FP +I+TYNMLL+ LSM +D +L+ +I ++GY PN T+DIIV G CK+G ++E
Sbjct: 819 KYFPVDIYTYNMLLRGLSMAGRMDSACNLYERICRQGYQPNRWTFDIIVHGFCKIGDKNE 878
Query: 178 AMRWIDEMHQLGFELTERTQQL 243
A RW+D +++ GF T T +L
Sbjct: 879 AERWMDALYRNGFYPTWYTMRL 900
Score = 49.3 bits (116), Expect(2) = 3e-06
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +3
Query: 657 IRKKGYKPNCLSYDVFVHGLCK-HSKEEGRRWIDEMHCMGFNLTGRTKQLKNNTM 818
I ++GY+PN ++D+ VHG CK K E RW+D ++ GF T T +L NN +
Sbjct: 851 ICRQGYQPNRWTFDIIVHGFCKIGDKNEAERWMDALYRNGFYPTWYTMRLYNNLL 905
Score = 28.9 bits (63), Expect(2) = 3e-06
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 568 FQLDIFMYNMLLRRLSMTLRFSNS 639
F +DI+ YNMLLR LSM R ++
Sbjct: 821 FPVDIYTYNMLLRGLSMAGRMDSA 844
>dbj|BAK07990.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 912
Score = 80.5 bits (197), Expect = 6e-13
Identities = 39/82 (47%), Positives = 56/82 (68%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 QFFPPNIFTYNMLLK-LSMTHGLDGFTDLFHKIRKKGYHPNNLTYDIIVRGLCKLGRRDE 177
QFFP +I+TYNMLL+ LSM +D ++F ++ ++GY PN T+DI+V G CK G R E
Sbjct: 814 QFFPVDIYTYNMLLRGLSMAGRMDSACNMFERLCQRGYLPNRYTFDIMVHGFCKHGSRSE 873
Query: 178 AMRWIDEMHQLGFELTERTQQL 243
A RW++ M++ GF T T +L
Sbjct: 874 AERWMEAMYRNGFYPTWYTMRL 895
Score = 53.5 bits (127), Expect(2) = 3e-08
Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 1/52 (1%)
Frame = +3
Query: 663 KKGYKPNCLSYDVFVHGLCKH-SKEEGRRWIDEMHCMGFNLTGRTKQLKNNT 815
++GY PN ++D+ VHG CKH S+ E RW++ M+ GF T T +L NNT
Sbjct: 848 QRGYLPNRYTFDIMVHGFCKHGSRSEAERWMEAMYRNGFYPTWYTMRLYNNT 899
Score = 31.2 bits (69), Expect(2) = 3e-08
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +1
Query: 538 EDLNDVI*QCFQLDIFMYNMLLRRLSMTLRFSNS 639
E L + + Q F +DI+ YNMLLR LSM R ++
Sbjct: 806 EVLEEGLEQFFPVDIYTYNMLLRGLSMAGRMDSA 839
>ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71210-like, partial [Cucumis sativus]
Length = 889
Score = 80.1 bits (196), Expect = 8e-13
Identities = 40/80 (50%), Positives = 55/80 (68%)
Frame = +1
Query: 7 FPPNIFTYNMLLKLSMTHGLDGFTDLFHKIRKKGYHPNNLTYDIIVRGLCKLGRRDEAMR 186
FP +I+TYN+LL+ +T ++ +LF ++ +KGY PN TYDI+V GL K GR EA R
Sbjct: 801 FPLDIYTYNLLLRTLITSDMERAFELFDRLCEKGYVPNKWTYDILVHGLFKQGRTVEAKR 860
Query: 187 WIDEMHQLGFELTERTQQLI 246
++ MH+ GF LTE TQ LI
Sbjct: 861 LLEIMHKKGFSLTECTQALI 880