BLASTX nr result
ID: Cimicifuga21_contig00017653
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00017653
(710 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 84 5e-28
gb|ABF81452.1| TIR-NBS type disease resistance protein [Populus ... 102 3e-27
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 84 8e-25
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera] 89 1e-24
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 84 2e-24
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 84.0 bits (206), Expect(2) = 5e-28
Identities = 37/67 (55%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Frame = +1
Query: 448 VLLPKGKKAIGCKWVYTKKEDASNGN-IRFKERLVAKGYAQKEGIDYNEVFSPVVKHSSI 624
V+ P G+K I CKWV+ KKE S +++K R+VA+G+ Q+EG+DYNE+FSPVV+H+SI
Sbjct: 826 VIQPSGRKIITCKWVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNEIFSPVVRHTSI 885
Query: 625 RILLDLV 645
R+LL +V
Sbjct: 886 RVLLAIV 892
Score = 66.6 bits (161), Expect(2) = 5e-28
Identities = 39/76 (51%), Positives = 49/76 (64%), Gaps = 6/76 (7%)
Frame = +3
Query: 237 IEESIALGRGRR-GTKTNPKY--RDYVAYALLVIEE---GIPSNYKEATMSSENEQWKVA 398
I +SIA R RR G + +Y D V YAL V EE PS YKEA +SS++E+W A
Sbjct: 750 IHQSIAQDRPRRVGVRPPTRYGFEDMVGYALQVAEEVDTSEPSTYKEAILSSDSEKWFAA 809
Query: 399 MDEEMKSHHKNETWDL 446
M +EM+S HKN+TWDL
Sbjct: 810 MGDEMESLHKNQTWDL 825
>gb|ABF81452.1| TIR-NBS type disease resistance protein [Populus trichocarpa]
Length = 1309
Score = 102 bits (255), Expect(2) = 3e-27
Identities = 52/64 (81%), Positives = 54/64 (84%), Gaps = 1/64 (1%)
Frame = +1
Query: 466 KKAIGCKWVYTKKE-DASNGNIRFKERLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLDL 642
KK IGCKWVY KKE + NIRFK RLVAKGYAQKEGIDYNEVFSPVVKHSSIRILL L
Sbjct: 105 KKTIGCKWVYAKKEGNPGKDNIRFKARLVAKGYAQKEGIDYNEVFSPVVKHSSIRILLAL 164
Query: 643 VTRF 654
V +F
Sbjct: 165 VAQF 168
Score = 45.1 bits (105), Expect(2) = 3e-27
Identities = 23/49 (46%), Positives = 32/49 (65%)
Frame = +3
Query: 240 EESIALGRGRRGTKTNPKYRDYVAYALLVIEEGIPSNYKEATMSSENEQ 386
+ESIA + +R K +Y + VAYAL VI++GIP YKEA S E ++
Sbjct: 58 QESIATSKPKRVIKKPARYCNMVAYALPVIDDGIPYTYKEAVQSVERKK 106
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 83.6 bits (205), Expect(2) = 8e-25
Identities = 41/70 (58%), Positives = 53/70 (75%), Gaps = 1/70 (1%)
Frame = +1
Query: 448 VLLPKGKKAIGCKWVYTKKEDASNGNI-RFKERLVAKGYAQKEGIDYNEVFSPVVKHSSI 624
V LP+G K + CKW++ K+ S ++K RLVAKG++QKEGIDYNEVFSPVVKH SI
Sbjct: 949 VPLPEGVKPVDCKWLFKIKDGISXDEPPKYKSRLVAKGFSQKEGIDYNEVFSPVVKHKSI 1008
Query: 625 RILLDLVTRF 654
R+LL +V+ F
Sbjct: 1009 RVLLAMVSVF 1018
Score = 56.2 bits (134), Expect(2) = 8e-25
Identities = 48/167 (28%), Positives = 77/167 (46%), Gaps = 13/167 (7%)
Frame = +3
Query: 3 VTFDEASLWKPKEPSREVLQPVETSKVSVRTSVVHVDAP--DGEDTSTTEVPXXXXXXXX 176
VTFDE++++ ++ ++ +T + + VDAP +G D ++ E P
Sbjct: 811 VTFDESAMFGQRKEFGDLAGTSKTDLGANQKVEFEVDAPMENGVDDTSEEQPV------- 863
Query: 177 XXXXXXXXXXXNVNTGIEIPIEESIALGRGRRGTKTNPKYRDYV--------AYALLVIE 332
I+ +SIA R RR + +Y D V A+AL V E
Sbjct: 864 ----------------IDQNDSQSIAAHRPRREIRRPMRYVDCVSANITNPVAFALAVAE 907
Query: 333 E---GIPSNYKEATMSSENEQWKVAMDEEMKSHHKNETWDLCAFAKG 464
E P +YKEA S ++++W +MD+EM S KN+TW+L +G
Sbjct: 908 EIGREEPRSYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEG 954
>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
Length = 595
Score = 89.0 bits (219), Expect(2) = 1e-24
Identities = 41/67 (61%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Frame = +1
Query: 457 PKGKKAIGCKWVYTKKEDASNGN-IRFKERLVAKGYAQKEGIDYNEVFSPVVKHSSIRIL 633
P+GK+AIGCKWVY KKE S +FK RLVAKGY+Q++G+DY+E+FSP+V+H+SIR +
Sbjct: 199 PEGKRAIGCKWVYKKKEAISKKEGEKFKARLVAKGYSQRKGVDYDEIFSPMVRHTSIRTV 258
Query: 634 LDLVTRF 654
L LV F
Sbjct: 259 LGLVAHF 265
Score = 50.4 bits (119), Expect(2) = 1e-24
Identities = 28/69 (40%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Frame = +3
Query: 246 SIALGRGRRGTKTNPKY--RDYVAYALLVIEEGIPSNYKEATMSSENEQWKVAMDEEMKS 419
SIA+ + RR K +Y D V+YAL+ + P ++EA + E +W AM EE++
Sbjct: 128 SIAIDKPRRTIKPPTRYGFEDLVSYALITSSKD-PITFQEAIHNQEKSRWMGAMVEEIQF 186
Query: 420 HHKNETWDL 446
HKN+TWDL
Sbjct: 187 LHKNQTWDL 195
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 84.3 bits (207), Expect(2) = 2e-24
Identities = 41/67 (61%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Frame = +1
Query: 448 VLLPKGKKAIGCKWVYTKKEDASNGN-IRFKERLVAKGYAQKEGIDYNEVFSPVVKHSSI 624
V LPK KK I CKW++ +KE S+ + R+K RL+AKGY+Q GID+N+VFSPVVKHSSI
Sbjct: 1058 VKLPKEKKPIRCKWIFKRKEGISSSDEARYKARLIAKGYSQIPGIDFNDVFSPVVKHSSI 1117
Query: 625 RILLDLV 645
R LL +V
Sbjct: 1118 RTLLSIV 1124
Score = 53.9 bits (128), Expect(2) = 2e-24
Identities = 44/160 (27%), Positives = 69/160 (43%), Gaps = 7/160 (4%)
Frame = +3
Query: 3 VTFDEASLWKPKEPSREVLQPVETSKVSVRTSVVHVDAPDGEDTSTTEVPXXXXXXXXXX 182
V F E+ + K + ++ E + V V + AP+ ED + +
Sbjct: 917 VVFHESVMLHDKPSTNVPVESQEKASVQVEHLISSGHAPEKEDVAINQ------------ 964
Query: 183 XXXXXXXXXNVNTGIEIPIEESIALGRGRRGTKTNPKY---RDYVAYALLVIEE----GI 341
+ ++ ++ + SIA R +R K +Y + VAYAL V EE
Sbjct: 965 --DEPVIEDSNSSIVQQSPKRSIAKDRPKRNIKPPQRYIEEANIVAYALSVAEEIEGNAE 1022
Query: 342 PSNYKEATMSSENEQWKVAMDEEMKSHHKNETWDLCAFAK 461
PS Y EA +S + +W AM +EM+S KN TW+L K
Sbjct: 1023 PSTYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPK 1062