BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00017496
         (720 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511542.1| pentatricopeptide repeat-containing protein,...   191   1e-46
ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containi...   183   3e-44
gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indi...   120   2e-25
ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group] g...   120   2e-25
ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containi...   116   4e-24

>ref|XP_002511542.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223550657|gb|EEF52144.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 434

 Score =  191 bits (485), Expect = 1e-46
 Identities = 96/179 (53%), Positives = 127/179 (70%)
 Frame = +3

Query: 180 MEQKLVNSLLQFSLHPNQLKQIHALIITNFFHLTPNFLKKLLNPPIIDYARQVFDQIPQP 359
           ME+ L+ +LL   L  NQLKQIH+LII     L    ++KLLN   IDYARQ+FDQ+PQP
Sbjct: 1   MERTLI-TLLHSPLQINQLKQIHSLIIIKHPSLATVLVRKLLNLSDIDYARQLFDQVPQP 59

Query: 360 APFLYSSMIYTYSKLHQHHQALETFFFMHRNKIDIHYLALPPVLKSCVSLSTVQEGKQIH 539
              LY+S+I TYSKL  H  AL+TFF MH +   +     PPV+K+C SL  +  GKQ+H
Sbjct: 60  GQILYNSLISTYSKLSLHKDALKTFFSMHHSDTRLSCFTGPPVIKACSSLLAIDVGKQVH 119

Query: 540 ALVINNGFDSNTFIQSGLIDFYAKTGELDSAKRVFLGISVKDPVSYNCLISGYSKSGEV 716
           +L++  G D N ++Q+ L+DFYAK GEL SA+++F GI VKDP+SYNCLI+GYSK+G+V
Sbjct: 120 SLIVICGIDCNVYVQTSLMDFYAKIGELGSARKIFDGILVKDPISYNCLITGYSKAGDV 178



 Score = 78.2 bits (191), Expect = 2e-12
 Identities = 44/131 (33%), Positives = 74/131 (56%)
 Frame = +3

Query: 318 IDYARQVFDQIPQPAPFLYSSMIYTYSKLHQHHQALETFFFMHRNKIDIHYLALPPVLKS 497
           +D AR+ FD++ Q     +S+MI  Y++  + ++ALE F  M R K+  + + L  VL +
Sbjct: 279 VDDARKEFDRMGQRDIVAWSAMIAGYAQNGRSNEALELFECMRREKVKPNDVTLVSVLSA 338

Query: 498 CVSLSTVQEGKQIHALVINNGFDSNTFIQSGLIDFYAKTGELDSAKRVFLGISVKDPVSY 677
           CV L +V+ G  I + V +    SN ++ S L+  Y+K G +  A+ VF     KD V++
Sbjct: 339 CVQLGSVEMGNYIGSYVESQDLASNVYVASALVGMYSKCGNISKAREVFGKTPQKDIVTW 398

Query: 678 NCLISGYSKSG 710
           N +I G + +G
Sbjct: 399 NSMIVGLAVNG 409



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 32/128 (25%), Positives = 69/128 (53%)
 Frame = +3

Query: 327 ARQVFDQIPQPAPFLYSSMIYTYSKLHQHHQALETFFFMHRNKIDIHYLALPPVLKSCVS 506
           AR++FD + +     +++MI  Y+     ++ L+TF  M    I  + + L  +L  C  
Sbjct: 181 ARRLFDSMTERTVVSWNAMISCYAHNGDLNEGLKTFERMQAEDISPNEITLVTLLSICAK 240

Query: 507 LSTVQEGKQIHALVINNGFDSNTFIQSGLIDFYAKTGELDSAKRVFLGISVKDPVSYNCL 686
           L  ++ G +I   + +N    N  + + +++ Y K G +D A++ F  +  +D V+++ +
Sbjct: 241 LGDLEMGLRIKKYIEDNNLCVNMIVSTAILEMYVKCGAVDDARKEFDRMGQRDIVAWSAM 300

Query: 687 ISGYSKSG 710
           I+GY+++G
Sbjct: 301 IAGYAQNG 308


>ref|XP_002267998.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 618

 Score =  183 bits (465), Expect = 3e-44
 Identities = 95/179 (53%), Positives = 124/179 (69%)
 Frame = +3

Query: 180 MEQKLVNSLLQFSLHPNQLKQIHALIITNFFHLTPNFLKKLLNPPIIDYARQVFDQIPQP 359
           ME+ L++ LL  SL  NQLKQI ALII  +  LTP F+++LLN   I YARQVFDQIP P
Sbjct: 1   MERYLID-LLHCSLPINQLKQIQALIIIKYLSLTPLFIRRLLNASFIQYARQVFDQIPHP 59

Query: 360 APFLYSSMIYTYSKLHQHHQALETFFFMHRNKIDIHYLALPPVLKSCVSLSTVQEGKQIH 539
              ++ S I  YS+L  +++AL TF  MH+N + I    +PP+ KSC SL  +  GKQ+H
Sbjct: 60  DQGVHCSFITAYSRLSLNNEALRTFVSMHQNNVRIVCFTIPPIFKSCASLLAIDVGKQVH 119

Query: 540 ALVINNGFDSNTFIQSGLIDFYAKTGELDSAKRVFLGISVKDPVSYNCLISGYSKSGEV 716
           +LVI  GF S+ F Q+ LI+FYAK  +L SA+ +F GI VKD ++YNCLIS YS+SGEV
Sbjct: 120 SLVIRYGFHSSVFCQNALINFYAKINDLGSAELIFDGILVKDTIAYNCLISAYSRSGEV 178



 Score = 72.8 bits (177), Expect = 7e-11
 Identities = 40/131 (30%), Positives = 75/131 (57%)
 Frame = +3

Query: 318 IDYARQVFDQIPQPAPFLYSSMIYTYSKLHQHHQALETFFFMHRNKIDIHYLALPPVLKS 497
           +D  R VFD + +     +S+MI  Y++  + ++ALE F  M   +I  + + L  VL +
Sbjct: 279 VDDGRLVFDHMARRDVVTWSAMIAGYAQNGRSNEALELFENMKSAQIKPNDVTLVSVLSA 338

Query: 498 CVSLSTVQEGKQIHALVINNGFDSNTFIQSGLIDFYAKTGELDSAKRVFLGISVKDPVSY 677
           C  L +V+ G++I + V + G  SN ++ S L+  Y+K G +  A+++F  +  +D V++
Sbjct: 339 CAQLGSVETGERIGSYVESRGLISNVYVASALLGMYSKCGNIIKARQIFDKLPQRDNVTW 398

Query: 678 NCLISGYSKSG 710
           N +I G + +G
Sbjct: 399 NSMIMGLAING 409



 Score = 64.7 bits (156), Expect = 2e-08
 Identities = 33/128 (25%), Positives = 69/128 (53%)
 Frame = +3

Query: 327 ARQVFDQIPQPAPFLYSSMIYTYSKLHQHHQALETFFFMHRNKIDIHYLALPPVLKSCVS 506
           AR++FD++   +   +++MI  Y++   +H+    F  M     + + + L  VL  C  
Sbjct: 181 ARELFDKMRDRSIVSWNAMISCYAQNGDYHKGWIIFQRMQDEMCEPNEITLATVLSICAK 240

Query: 507 LSTVQEGKQIHALVINNGFDSNTFIQSGLIDFYAKTGELDSAKRVFLGISVKDPVSYNCL 686
           L  ++ G +I  L  N    SN  + + +++ Y K G +D  + VF  ++ +D V+++ +
Sbjct: 241 LGDLEMGLRIKKLNDNKNLGSNMIVSTAMLEMYVKCGAVDDGRLVFDHMARRDVVTWSAM 300

Query: 687 ISGYSKSG 710
           I+GY+++G
Sbjct: 301 IAGYAQNG 308


>gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  120 bits (302), Expect = 2e-25
 Identities = 57/130 (43%), Positives = 84/130 (64%)
 Frame = +3

Query: 327 ARQVFDQIPQPAPFLYSSMIYTYSKLHQHHQALETFFFMHRNKIDIHYLALPPVLKSCVS 506
           AR +FD +P+P P L  ++I   S+L  H + L+ F  +HR   D+    +P V+KSC  
Sbjct: 38  ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97

Query: 507 LSTVQEGKQIHALVINNGFDSNTFIQSGLIDFYAKTGELDSAKRVFLGISVKDPVSYNCL 686
           L+  ++GKQ+H   I  G   + F+Q+ L+DFYAK G++D A +VF  + VKDP+  NCL
Sbjct: 98  LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCL 157

Query: 687 ISGYSKSGEV 716
           I+GYSKSG+V
Sbjct: 158 ITGYSKSGDV 167



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 39/131 (29%), Positives = 69/131 (52%)
 Frame = +3

Query: 318 IDYARQVFDQIPQPAPFLYSSMIYTYSKLHQHHQALETFFFMHRNKIDIHYLALPPVLKS 497
           ID AR+ FD++ Q     +S+MI  Y++  + H++LE F  M       + + L  VL +
Sbjct: 267 IDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSA 326

Query: 498 CVSLSTVQEGKQIHALVINNGFDSNTFIQSGLIDFYAKTGELDSAKRVFLGISVKDPVSY 677
           C  L + + G QI + V +      +++ S LID Y K G +  A+ VF  +  K  +++
Sbjct: 327 CAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITW 386

Query: 678 NCLISGYSKSG 710
           N ++ G + +G
Sbjct: 387 NSMMRGLALNG 397


>ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
           gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR)
           repeat-containing protein-like [Oryza sativa Japonica
           Group] gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza
           sativa Japonica Group] gi|125571815|gb|EAZ13330.1|
           hypothetical protein OsJ_03251 [Oryza sativa Japonica
           Group]
          Length = 608

 Score =  120 bits (302), Expect = 2e-25
 Identities = 57/130 (43%), Positives = 84/130 (64%)
 Frame = +3

Query: 327 ARQVFDQIPQPAPFLYSSMIYTYSKLHQHHQALETFFFMHRNKIDIHYLALPPVLKSCVS 506
           AR +FD +P+P P L  ++I   S+L  H + L+ F  +HR   D+    +P V+KSC  
Sbjct: 38  ARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSCAI 97

Query: 507 LSTVQEGKQIHALVINNGFDSNTFIQSGLIDFYAKTGELDSAKRVFLGISVKDPVSYNCL 686
           L+  ++GKQ+H   I  G   + F+Q+ L+DFYAK G++D A +VF  + VKDP+  NCL
Sbjct: 98  LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCL 157

Query: 687 ISGYSKSGEV 716
           I+GYSKSG+V
Sbjct: 158 ITGYSKSGDV 167



 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 39/131 (29%), Positives = 69/131 (52%)
 Frame = +3

Query: 318 IDYARQVFDQIPQPAPFLYSSMIYTYSKLHQHHQALETFFFMHRNKIDIHYLALPPVLKS 497
           ID AR+ FD++ Q     +S+MI  Y++  + H++LE F  M       + + L  VL +
Sbjct: 267 IDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSA 326

Query: 498 CVSLSTVQEGKQIHALVINNGFDSNTFIQSGLIDFYAKTGELDSAKRVFLGISVKDPVSY 677
           C  L + + G QI + V +      +++ S LID Y K G +  A+ VF  +  K  +++
Sbjct: 327 CAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITW 386

Query: 678 NCLISGYSKSG 710
           N ++ G + +G
Sbjct: 387 NSMMRGLALNG 397


>ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera] gi|296081235|emb|CBI17979.3| unnamed
           protein product [Vitis vinifera]
          Length = 742

 Score =  116 bits (291), Expect = 4e-24
 Identities = 61/175 (34%), Positives = 103/175 (58%), Gaps = 4/175 (2%)
 Frame = +3

Query: 198 NSLLQFSLHPNQLKQIHALIITNFF----HLTPNFLKKLLNPPIIDYARQVFDQIPQPAP 365
           +SLL  S+H   L QIHA ++ +       L   F+    N   I YAR+VFD+ P+P+ 
Sbjct: 75  SSLLDHSVHKRHLNQIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSV 134

Query: 366 FLYSSMIYTYSKLHQHHQALETFFFMHRNKIDIHYLALPPVLKSCVSLSTVQEGKQIHAL 545
           FL++++I  YS  +    A+E +  M  + ++     LP VLK+C  +  ++ GK++H  
Sbjct: 135 FLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQ 194

Query: 546 VINNGFDSNTFIQSGLIDFYAKTGELDSAKRVFLGISVKDPVSYNCLISGYSKSG 710
           +   GF+S+ F+Q+GL+  YAK G ++ A+ VF G+  ++ VS+  +ISGY ++G
Sbjct: 195 IFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNG 249



 Score = 63.5 bits (153), Expect = 4e-08
 Identities = 36/131 (27%), Positives = 68/131 (51%)
 Frame = +3

Query: 318 IDYARQVFDQIPQPAPFLYSSMIYTYSKLHQHHQALETFFFMHRNKIDIHYLALPPVLKS 497
           ++ AR VF+ +       ++SMI  Y +     +AL  F  M +  +   ++AL  VL++
Sbjct: 220 VEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRA 279

Query: 498 CVSLSTVQEGKQIHALVINNGFDSNTFIQSGLIDFYAKTGELDSAKRVFLGISVKDPVSY 677
              +  +++GK IH  V+  G +    +   L   YAK G++  A+  F  + + + + +
Sbjct: 280 YTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMW 339

Query: 678 NCLISGYSKSG 710
           N +ISGY+K+G
Sbjct: 340 NAMISGYAKNG 350



 Score = 59.7 bits (143), Expect = 6e-07
 Identities = 41/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
 Frame = +3

Query: 231 QLKQIHALIITNFFHLTPNFLKKLLNPPI----IDYARQVFDQIPQPAPFLYSSMIYTYS 398
           Q K IH  ++       P+ L  L         +  AR  FDQ+  P   ++++MI  Y+
Sbjct: 288 QGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYA 347

Query: 399 KLHQHHQALETFFFMHRNKIDIHYLALPPVLKSCVSLSTVQEGKQIHALVINNGFDSNTF 578
           K    ++A+  F  M    I    + +   + +C  + ++   K +   +    + ++ F
Sbjct: 348 KNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEYRNDVF 407

Query: 579 IQSGLIDFYAKTGELDSAKRVFLGISVKDPVSYNCLISGYSKSG 710
           + + LID +AK G +D A+ VF     KD V ++ +I GY   G
Sbjct: 408 VNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHG 451