BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00017471
         (453 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277599.2| PREDICTED: cytochrome c6, chloroplastic isof...   183   1e-44
ref|XP_003631239.1| PREDICTED: cytochrome c6, chloroplastic isof...   183   1e-44
ref|XP_002333234.1| predicted protein [Populus trichocarpa] gi|2...   174   9e-42
ref|NP_568640.1| cytochrome c6 [Arabidopsis thaliana] gi|2780545...   172   3e-41
gb|ABK56012.1| electron transporter protein [Brassica rapa]           169   2e-40

>ref|XP_002277599.2| PREDICTED: cytochrome c6, chloroplastic isoform 1 [Vitis vinifera]
          Length = 167

 Score =  183 bits (464), Expect = 1e-44
 Identities = 86/133 (64%), Positives = 104/133 (78%), Gaps = 1/133 (0%)
 Frame = -1

Query: 396 LSTKGRVEIKGESD-SQQQNQLKLSKFLTPPLMAAILTLSPFCNPQASLGQVTEVHKGAA 220
           L  KG V  +G++   ++Q Q+K  K L PPLMAA++ LSP CN   SL Q T++ +GAA
Sbjct: 11  LPVKGMVGERGKTPVHEKQKQVKFLKGLAPPLMAAVVALSPICNTPVSLAQTTDIQRGAA 70

Query: 219 LFNKACIGCHVGGGNIIQPGTTLFSEDLLRNGVETEEKIYRITYSGKGRMPGFGQNCTPR 40
           LF +ACIGCH  GGNIIQPG TLF +DL RNGV+TEE+IYR+TY GKGRMPGFG+NCTPR
Sbjct: 71  LFGRACIGCHDAGGNIIQPGATLFLKDLQRNGVDTEEEIYRVTYYGKGRMPGFGENCTPR 130

Query: 39  GQCTFGPRLQDEE 1
           GQCTFG RLQ+EE
Sbjct: 131 GQCTFGARLQEEE 143


>ref|XP_003631239.1| PREDICTED: cytochrome c6, chloroplastic isoform 2 [Vitis vinifera]
           gi|297737964|emb|CBI27165.3| unnamed protein product
           [Vitis vinifera]
          Length = 173

 Score =  183 bits (464), Expect = 1e-44
 Identities = 86/133 (64%), Positives = 104/133 (78%), Gaps = 1/133 (0%)
 Frame = -1

Query: 396 LSTKGRVEIKGESD-SQQQNQLKLSKFLTPPLMAAILTLSPFCNPQASLGQVTEVHKGAA 220
           L  KG V  +G++   ++Q Q+K  K L PPLMAA++ LSP CN   SL Q T++ +GAA
Sbjct: 17  LPVKGMVGERGKTPVHEKQKQVKFLKGLAPPLMAAVVALSPICNTPVSLAQTTDIQRGAA 76

Query: 219 LFNKACIGCHVGGGNIIQPGTTLFSEDLLRNGVETEEKIYRITYSGKGRMPGFGQNCTPR 40
           LF +ACIGCH  GGNIIQPG TLF +DL RNGV+TEE+IYR+TY GKGRMPGFG+NCTPR
Sbjct: 77  LFGRACIGCHDAGGNIIQPGATLFLKDLQRNGVDTEEEIYRVTYYGKGRMPGFGENCTPR 136

Query: 39  GQCTFGPRLQDEE 1
           GQCTFG RLQ+EE
Sbjct: 137 GQCTFGARLQEEE 149


>ref|XP_002333234.1| predicted protein [Populus trichocarpa] gi|222835556|gb|EEE73991.1|
           predicted protein [Populus trichocarpa]
          Length = 159

 Score =  174 bits (440), Expect = 9e-42
 Identities = 83/128 (64%), Positives = 102/128 (79%), Gaps = 3/128 (2%)
 Frame = -1

Query: 375 EIKGESDSQ---QQNQLKLSKFLTPPLMAAILTLSPFCNPQASLGQVTEVHKGAALFNKA 205
           E +GES +    +Q ++KL K L  PLMAA++ LSP  N   SLGQ  +V +GA+LF++ 
Sbjct: 8   EKQGESQNPVVLKQKEVKLVKSLALPLMAALVALSPIGNTPVSLGQTLDVQRGASLFSRT 67

Query: 204 CIGCHVGGGNIIQPGTTLFSEDLLRNGVETEEKIYRITYSGKGRMPGFGQNCTPRGQCTF 25
           CIGCH  GGNIIQPG TLF++DL RNGV+TEE+IYR+TY GKGRMPGFG++CTPRGQCTF
Sbjct: 68  CIGCHDAGGNIIQPGATLFTKDLQRNGVDTEEEIYRMTYFGKGRMPGFGESCTPRGQCTF 127

Query: 24  GPRLQDEE 1
           GPRLQDEE
Sbjct: 128 GPRLQDEE 135


>ref|NP_568640.1| cytochrome c6 [Arabidopsis thaliana]
           gi|27805454|sp|Q93VA3.1|CYC6_ARATH RecName:
           Full=Cytochrome c6, chloroplastic; AltName:
           Full=Cytochrome c-552; Short=Atc6; AltName:
           Full=Cytochrome c-553; AltName: Full=Cytochrome c553;
           AltName: Full=Soluble cytochrome f; Flags: Precursor
           gi|13926305|gb|AAK49619.1|AF372903_1 AT5g45040/K21C13_23
           [Arabidopsis thaliana] gi|16323250|gb|AAL15359.1|
           AT5g45040/K21C13_23 [Arabidopsis thaliana]
           gi|19571824|emb|CAD27418.1| c6 type cytochrome
           [Arabidopsis thaliana] gi|332007810|gb|AED95193.1|
           cytochrome c6 [Arabidopsis thaliana]
          Length = 175

 Score =  172 bits (436), Expect = 3e-41
 Identities = 78/110 (70%), Positives = 90/110 (81%)
 Frame = -1

Query: 330 LSKFLTPPLMAAILTLSPFCNPQASLGQVTEVHKGAALFNKACIGCHVGGGNIIQPGTTL 151
           L K L PPL A +L +SP C P  SLGQ  ++ +GA LFN+ACIGCH  GGNIIQPG TL
Sbjct: 44  LLKKLAPPLTAVLLAVSPICFPPESLGQTLDIQRGATLFNRACIGCHDTGGNIIQPGATL 103

Query: 150 FSEDLLRNGVETEEKIYRITYSGKGRMPGFGQNCTPRGQCTFGPRLQDEE 1
           F++DL RNGV+TEE+IYR+TY GKGRMPGFG+ CTPRGQCTFGPRLQDEE
Sbjct: 104 FTKDLERNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEE 153


>gb|ABK56012.1| electron transporter protein [Brassica rapa]
          Length = 174

 Score =  169 bits (428), Expect = 2e-40
 Identities = 76/110 (69%), Positives = 87/110 (79%)
 Frame = -1

Query: 330 LSKFLTPPLMAAILTLSPFCNPQASLGQVTEVHKGAALFNKACIGCHVGGGNIIQPGTTL 151
           L K    PL A +L +SP CNP  SLGQ  ++ +GA +FN+ACIGCH  GGNIIQPG TL
Sbjct: 43  LIKGFAAPLTAVLLAVSPICNPPESLGQTLDIQRGATVFNRACIGCHDTGGNIIQPGATL 102

Query: 150 FSEDLLRNGVETEEKIYRITYSGKGRMPGFGQNCTPRGQCTFGPRLQDEE 1
           F  DL RNGV+TEE+IYR+TY GKGRMPGFG+ CTPRGQCTFGPRLQDEE
Sbjct: 103 FPSDLQRNGVDTEEEIYRVTYFGKGRMPGFGEKCTPRGQCTFGPRLQDEE 152