BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00017259
         (624 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsi...    80   4e-13
gb|ABI34371.1| Gag/pol polyprotein, 3'-partial, putative [Solanu...    78   1e-12
gb|ACS88375.1| retrotransposon protein [Coix lacryma-jobi]             74   2e-11
gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|43780...    73   4e-11
gb|AAT39963.2| Polyprotein, putative [Solanum demissum]                72   1e-10

>gb|AAD22283.1| putative retroelement pol polyprotein [Arabidopsis thaliana]
          Length = 1787

 Score = 79.7 bits (195), Expect = 4e-13
 Identities = 41/93 (44%), Positives = 52/93 (55%)
 Frame = -2

Query: 362  REELVRVLKNKRGIFALNVRQMPGIDLVVVCHKLDID*KYKPLKQTLRWISLDRKLKVQD 183
            + ELV  L+     FA +V  MPGID  V CH+L++D  YKPLKQ  R +  DR   V +
Sbjct: 741  QNELVNFLRQNAATFAWSVEDMPGIDSAVTCHELNVDPTYKPLKQKRRKLGPDRTKDVNE 800

Query: 182  EVNMILEVNLIKPFVYPIWLSNVATVPKKNEKY 84
            EV  +L+   I    YP WL N   V KKN K+
Sbjct: 801  EVKKLLDAGSIVEVRYPDWLRNPVVVKKKNGKW 833


>gb|ABI34371.1| Gag/pol polyprotein, 3'-partial, putative [Solanum demissum]
          Length = 907

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 37/109 (33%), Positives = 64/109 (58%)
 Frame = -2

Query: 413 ESQAEETTFVLKRCPQKREELVRVLKNKRGIFALNVRQMPGIDLVVVCHKLDID*KYKPL 234
           E +  E T +      ++E++++ L + + +FA +   MPG+   +V HKL ID K+ P+
Sbjct: 670 EDEVFEETKISVHARHQKEDIIQALFDYKDVFASSYDDMPGLSTDMVVHKLPIDPKFPPV 729

Query: 233 KQTLRWISLDRKLKVQDEVNMILEVNLIKPFVYPIWLSNVATVPKKNEK 87
           KQ LR +  D  + +++E+   LE  +I+   YP WL+N+  VPKK+ K
Sbjct: 730 KQKLRKLKTDMSVIIKEEITKQLEAKVIRVAQYPSWLANIVPVPKKDGK 778


>gb|ACS88375.1| retrotransposon protein [Coix lacryma-jobi]
          Length = 1902

 Score = 74.3 bits (181), Expect = 2e-11
 Identities = 37/96 (38%), Positives = 56/96 (58%)
 Frame = -2

Query: 371  PQKREELVRVLKNKRGIFALNVRQMPGIDLVVVCHKLDID*KYKPLKQTLRWISLDRKLK 192
            PQ    LV  L+     FA +   + G++  ++ H L+I   Y+P+KQ LR +S +RK  
Sbjct: 859  PQSEGNLVTFLRENSDTFAWSAEDLKGVNRSMIEHSLNIKTGYRPIKQKLRKMSEERKEA 918

Query: 191  VQDEVNMILEVNLIKPFVYPIWLSNVATVPKKNEKY 84
             + EV  +L+  +I+P  YP WLSNV  V KKN+K+
Sbjct: 919  AKAEVKRLLDAGVIRPVKYPSWLSNVVLVQKKNKKW 954


>gb|AAD27571.1|AF114171_12 polyprotein [Sorghum bicolor] gi|4378066|gb|AAD19359.1| polyprotein
            [Sorghum bicolor]
          Length = 1877

 Score = 73.2 bits (178), Expect = 4e-11
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 2/113 (1%)
 Frame = -2

Query: 419  PLESQAEETTFVLKRCPQKREEL--VRVLKNKRGIFALNVRQMPGIDLVVVCHKLDID*K 246
            PL+    +    +     + EEL  + VL+  + IFA +   + G+   ++ H LDID +
Sbjct: 815  PLQEAVPDKKVTISATLSREEELELLDVLQKNQDIFAWSAADLQGVSRDIIEHSLDIDPR 874

Query: 245  YKPLKQTLRWISLDRKLKVQDEVNMILEVNLIKPFVYPIWLSNVATVPKKNEK 87
             +P KQ  R +S +R L  + EV  +L+  +I+  +YP WL+NV  VPKKN K
Sbjct: 875  MRPKKQRQRKMSEERTLAAKAEVQRLLDAKVIREVIYPEWLANVVLVPKKNGK 927


>gb|AAT39963.2| Polyprotein, putative [Solanum demissum]
          Length = 1504

 Score = 71.6 bits (174), Expect = 1e-10
 Identities = 33/93 (35%), Positives = 57/93 (61%)
 Frame = -2

Query: 365 KREELVRVLKNKRGIFALNVRQMPGIDLVVVCHKLDID*KYKPLKQTLRWISLDRKLKVQ 186
           + E+ ++ L + + +FA +   MPG+   +V HKL ID K+ P+K+ LR +  D  + ++
Sbjct: 532 EEEDKIQALLDYKDVFASSYDDMPGLSTDMVVHKLPIDPKFPPVKKKLRKLKTDMSVIIK 591

Query: 185 DEVNMILEVNLIKPFVYPIWLSNVATVPKKNEK 87
           +E+   LE  +I+   YP WL+N+  VPKK+ K
Sbjct: 592 EEITKQLEAKVIRVAQYPSWLANIVPVPKKDGK 624