BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00017027
         (581 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containi...   300   2e-79
ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containi...   293   1e-77
ref|XP_002324065.1| predicted protein [Populus trichocarpa] gi|2...   290   2e-76
ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containi...   285   4e-75
ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago t...   276   2e-72

>ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Vitis vinifera]
          Length = 703

 Score =  300 bits (767), Expect = 2e-79
 Identities = 141/193 (73%), Positives = 163/193 (84%)
 Frame = -3

Query: 579 EDANQVFNNMVYRDSVTWNSMISGYSHHGLGREALSVFHGMLAAAEVPNYVTFIGVLSAC 400
           E A++VF  M+ RDS+TW++MI G SHHGLGREAL VF  MLAA E P+YVTF+GVLSAC
Sbjct: 383 EAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEMLAAKECPHYVTFVGVLSAC 442

Query: 399 GHLGRVDEGFYYLNQLMKDMMIEPGLEHYTCIVGLLGRAGLLSEAENFMRSISIKWDVVA 220
            HLG V EGFYYLNQLMK   IEPG+EHYTCIVGLL +AG L EAENFM+S  +KWDVVA
Sbjct: 443 AHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGRLDEAENFMKSTPVKWDVVA 502

Query: 219 WRTLLSACHVHRNLNLGNQVAEVILKLDPNDVGTYILLSNMYAKVKRWDGVVNMRKLMRG 40
           WRTLLSACHVH+N  LG +VAE++L++DP DVGTYILLSNMYAK KRWDGVV +RKLMR 
Sbjct: 503 WRTLLSACHVHQNYGLGKKVAELVLQMDPGDVGTYILLSNMYAKAKRWDGVVKIRKLMRE 562

Query: 39  RDIKKEPGVSWIQ 1
           R++KKEPG SWI+
Sbjct: 563 RNVKKEPGASWIE 575



 Score = 55.1 bits (131), Expect = 9e-06
 Identities = 59/224 (26%), Positives = 95/224 (42%), Gaps = 35/224 (15%)
 Frame = -3

Query: 573 ANQVFNNMVYRDSVTWNSMISGYSHHGLGREALSVFHGMLAAAEV-PNYVTFIGVLSACG 397
           A  +F+ M  R+ V+W ++++GY H+GL  E L +F  M++   + PN   F  ++S+C 
Sbjct: 81  ARILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCS 140

Query: 396 HLGRVDEGF----------YYLNQLMKDMMI------------------EPGLE--HYTC 307
             G+V EG+             +Q +K+ +I                   PGL+   Y  
Sbjct: 141 DSGQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNI 200

Query: 306 IVGLLGRAGLLSEAENFMRSI---SIKWDVVAWRTLLSACHVHRNLNLGNQVAEVILKLD 136
           I+  L   G  SEA   +  +    I WD V + T    C   ++L LG QV   + +  
Sbjct: 201 IINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTG 260

Query: 135 PN-DVGTYILLSNMYAKVKRWDGVVNMRKLMRGRDIKKEPGVSW 7
              D      + +MY K      ++N RK+      K    VSW
Sbjct: 261 AEYDSFVSSAIIDMYGKC---GNILNARKVFNRLQTKNV--VSW 299


>ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  293 bits (751), Expect = 1e-77
 Identities = 133/192 (69%), Positives = 161/192 (83%)
 Frame = -3

Query: 579 EDANQVFNNMVYRDSVTWNSMISGYSHHGLGREALSVFHGMLAAAEVPNYVTFIGVLSAC 400
           + +  VF +M+YRD +TWN+MI GYSHHGLG++AL VF  M++A E PNYVTFIGVLSA 
Sbjct: 374 DSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAY 433

Query: 399 GHLGRVDEGFYYLNQLMKDMMIEPGLEHYTCIVGLLGRAGLLSEAENFMRSISIKWDVVA 220
            HLG V EGFYYLN LM++  IEPGLEHYTC+V LL RAGLL EAENFM++  +KWDVVA
Sbjct: 434 SHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSRAGLLDEAENFMKTTQVKWDVVA 493

Query: 219 WRTLLSACHVHRNLNLGNQVAEVILKLDPNDVGTYILLSNMYAKVKRWDGVVNMRKLMRG 40
           WRTLL+ACHVHRN +LG ++AE +L++DP+DVGTY LLSNMYAK +RWDGVV +RKLMR 
Sbjct: 494 WRTLLNACHVHRNYDLGRRIAESVLQMDPHDVGTYTLLSNMYAKARRWDGVVTIRKLMRE 553

Query: 39  RDIKKEPGVSWI 4
           R+IKKEPG SW+
Sbjct: 554 RNIKKEPGASWL 565


>ref|XP_002324065.1| predicted protein [Populus trichocarpa] gi|222867067|gb|EEF04198.1|
           predicted protein [Populus trichocarpa]
          Length = 707

 Score =  290 bits (741), Expect = 2e-76
 Identities = 134/193 (69%), Positives = 160/193 (82%)
 Frame = -3

Query: 579 EDANQVFNNMVYRDSVTWNSMISGYSHHGLGREALSVFHGMLAAAEVPNYVTFIGVLSAC 400
           E A +VF++M++RD +TWN+MI G+SHHGLG++AL VF  MLAA E PNYVTF GVLSAC
Sbjct: 387 EAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDMLAAEEHPNYVTFTGVLSAC 446

Query: 399 GHLGRVDEGFYYLNQLMKDMMIEPGLEHYTCIVGLLGRAGLLSEAENFMRSISIKWDVVA 220
           GHLG V EGFYYL+ LMK   ++PGLEHYTCIV LL + G L+EA NFMR+  +KWDVVA
Sbjct: 447 GHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQLNEARNFMRTAPVKWDVVA 506

Query: 219 WRTLLSACHVHRNLNLGNQVAEVILKLDPNDVGTYILLSNMYAKVKRWDGVVNMRKLMRG 40
           WRTLL+ACHVH+N  LG  VAE +L++DPNDVGTY LLSN+YAK KRWDGVV +RKLMR 
Sbjct: 507 WRTLLNACHVHQNYGLGRWVAEFVLEMDPNDVGTYTLLSNIYAKEKRWDGVVKVRKLMRD 566

Query: 39  RDIKKEPGVSWIQ 1
           + IKKEPGVSWI+
Sbjct: 567 KKIKKEPGVSWIE 579


>ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  285 bits (729), Expect = 4e-75
 Identities = 128/193 (66%), Positives = 161/193 (83%), Gaps = 1/193 (0%)
 Frame = -3

Query: 579 EDANQVFNNMVYRDSVTWNSMISGYSHHGLGREALSVFHGMLAAAEVPNYVTFIGVLSAC 400
           + +  VF+NM+ RD +TWN+MI GYSHHGLG++AL VF  M++A E PNYVTFIGVLSAC
Sbjct: 382 DSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMSAGECPNYVTFIGVLSAC 441

Query: 399 GHLGRVDEGFYYLNQLMKDMMIEPGLEHYTCIVGLLGRAGLLSEAENFMRSIS-IKWDVV 223
            HL  V EGFYY +Q+MK   +EPGLEHYTC+V LLGRAGLL EAENFM++ + +KWDVV
Sbjct: 442 VHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLDEAENFMKTTTQVKWDVV 501

Query: 222 AWRTLLSACHVHRNLNLGNQVAEVILKLDPNDVGTYILLSNMYAKVKRWDGVVNMRKLMR 43
           AWRTLL+ACH+HRN NLG Q+ E ++++DP+DVGTY LLSNM+AK ++WDGVV +RKLM+
Sbjct: 502 AWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTYTLLSNMHAKARKWDGVVKIRKLMK 561

Query: 42  GRDIKKEPGVSWI 4
            R+IKKEPG SW+
Sbjct: 562 ERNIKKEPGASWL 574



 Score = 62.4 bits (150), Expect = 5e-08
 Identities = 61/224 (27%), Positives = 98/224 (43%), Gaps = 35/224 (15%)
 Frame = -3

Query: 573 ANQVFNNMVYRDSVTWNSMISGYSHHGLGREALSVFHGMLAA-AEVPNYVTFIGVLSACG 397
           A ++F+ M+ R+ V+W++++ GY H G   E L +F  +++  +  PN   F  VLS C 
Sbjct: 80  ARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCA 139

Query: 396 HLGRVDEG----------FYYLNQLMKDMMIE------------------PG--LEHYTC 307
             GRV EG             L+Q +K+ +I                   PG  +  Y  
Sbjct: 140 DSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNS 199

Query: 306 IVGLLGRAGLLSEAENFMRSI---SIKWDVVAWRTLLSACHVHRNLNLGNQVAEVILKLD 136
           I+  L  +G   EA   ++ +    + WD V + ++L  C   R+L LG Q+   +LK  
Sbjct: 200 ILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTG 259

Query: 135 -PNDVGTYILLSNMYAKVKRWDGVVNMRKLMRGRDIKKEPGVSW 7
              DV     L + Y K      V+N RK   G  ++    V+W
Sbjct: 260 LVFDVFVSSTLIDTYGKCGE---VLNARKQFDG--LRDRNVVAW 298


>ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355496269|gb|AES77472.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 700

 Score =  276 bits (705), Expect = 2e-72
 Identities = 124/193 (64%), Positives = 156/193 (80%)
 Frame = -3

Query: 579 EDANQVFNNMVYRDSVTWNSMISGYSHHGLGREALSVFHGMLAAAEVPNYVTFIGVLSAC 400
           + +  VF +M  RD +TWN+MI GYS HGLG++AL +F  ML+A E PN+VTF+GVLSAC
Sbjct: 380 DSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSAC 439

Query: 399 GHLGRVDEGFYYLNQLMKDMMIEPGLEHYTCIVGLLGRAGLLSEAENFMRSISIKWDVVA 220
            HL  V+EGFYYLNQLMK   +EPGLEHYTC+V +L RAG+L EAENFMR+  +KWDVVA
Sbjct: 440 AHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMRTTQVKWDVVA 499

Query: 219 WRTLLSACHVHRNLNLGNQVAEVILKLDPNDVGTYILLSNMYAKVKRWDGVVNMRKLMRG 40
           WR LL+AC++HRN NLG ++AE IL++DP D+GTY LLSNMYAK + WD V  +RK+MR 
Sbjct: 500 WRVLLNACNIHRNYNLGTKIAETILQMDPRDMGTYTLLSNMYAKARSWDSVTMIRKMMRE 559

Query: 39  RDIKKEPGVSWIQ 1
           R++KKEPGVSWI+
Sbjct: 560 RNVKKEPGVSWIE 572