BLASTX nr result
ID: Cimicifuga21_contig00016984
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00016984
(441 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276502.1| PREDICTED: splicing factor U2af small subuni... 133 1e-29
ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, pu... 124 6e-27
emb|CAA77134.1| U2 snRNP auxiliary factor, small subunit [Oryza ... 115 3e-24
ref|XP_002863733.1| hypothetical protein ARALYDRAFT_494737 [Arab... 115 4e-24
ref|NP_199096.1| Splicing factor U2af small subunit B [Arabidops... 115 4e-24
>ref|XP_002276502.1| PREDICTED: splicing factor U2af small subunit B isoform 1 [Vitis
vinifera] gi|359491881|ref|XP_003634337.1| PREDICTED:
splicing factor U2af small subunit B isoform 2 [Vitis
vinifera]
Length = 272
Score = 133 bits (335), Expect = 1e-29
Identities = 75/149 (50%), Positives = 88/149 (59%), Gaps = 2/149 (1%)
Frame = -1
Query: 441 KYEEEAAATLKAFKRRAYCGRKIIVDFSPVTDFRHAVCKRFEENGCDRGKFCNFLHVKQI 262
K EE+AAA L+A + R Y GR II DFSPVTDFR A C++FEEN C+RG +CNF+HVK I
Sbjct: 117 KEEEQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLI 176
Query: 261 GRALRRRLFGKNHXXXXXXXXXXXXXXXSYQTRSEGRGGDNCYRGNYYGNGRRSADRHGR 82
GR LRR+LFG+ + R GD RG+Y GNGRRS D+HG
Sbjct: 177 GRDLRRKLFGRYSGYGRSRSRSRSLSPRYRRDSDRRRSGD---RGDYRGNGRRSGDKHGS 233
Query: 81 YAG--XXXXXXXXXXXXREGSEERRARIE 1
G REGSEERRARIE
Sbjct: 234 DGGRRRHGSPRRSRSPVREGSEERRARIE 262
>ref|XP_002510741.1| U2 snrnp auxiliary factor, small subunit, putative [Ricinus
communis] gi|223551442|gb|EEF52928.1| U2 snrnp auxiliary
factor, small subunit, putative [Ricinus communis]
Length = 272
Score = 124 bits (312), Expect = 6e-27
Identities = 70/146 (47%), Positives = 85/146 (58%), Gaps = 1/146 (0%)
Frame = -1
Query: 435 EEEAAATLKAFKRRAYCGRKIIVDFSPVTDFRHAVCKRFEENGCDRGKFCNFLHVKQIGR 256
E++AAA L+A + R Y GR II DFSPVTDFR A C++FEEN C+RG +CNF+HVK IGR
Sbjct: 119 EDQAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQFEENNCNRGGYCNFMHVKLIGR 178
Query: 255 ALRRRLFGKNHXXXXXXXXXXXXXXXSYQTRSEGRGGDNCYRG-NYYGNGRRSADRHGRY 79
LRR+LFG+ ++ + YR +Y GNGRRS DRH R
Sbjct: 179 DLRRKLFGRYRGYRASRSRSRSVSPSRHRREKSNDRRERDYRDRDYRGNGRRSGDRHDR- 237
Query: 78 AGXXXXXXXXXXXXREGSEERRARIE 1
REGSEERRARIE
Sbjct: 238 -RRHGSPRRSRSPVREGSEERRARIE 262
>emb|CAA77134.1| U2 snRNP auxiliary factor, small subunit [Oryza sativa]
Length = 274
Score = 115 bits (289), Expect = 3e-24
Identities = 67/157 (42%), Positives = 85/157 (54%), Gaps = 12/157 (7%)
Frame = -1
Query: 435 EEEAAATLKAFKRRAYCGRKIIVDFSPVTDFRHAVCKRFEENGCDRGKFCNFLHVKQIGR 256
E++AA L+A R Y GR IIV+FSPV+DFR A C+++EEN C+RG +CNF+HVK+IGR
Sbjct: 119 EDQAARALQALTGRYYSGRPIIVEFSPVSDFREATCRQYEENSCNRGGYCNFMHVKEIGR 178
Query: 255 ALRRRLFGKNHXXXXXXXXXXXXXXXSYQTR--------SEGRGGDNCYRGN----YYGN 112
LR+RLFG H Y R S R D+ YRG Y G
Sbjct: 179 DLRKRLFGHLHRSRRSHSHGRSRSPSPYHYRRDYDRRSSSRSRDHDDYYRGGSHDYYRGG 238
Query: 111 GRRSADRHGRYAGXXXXXXXXXXXXREGSEERRARIE 1
RRS++RH +GSEERRA+IE
Sbjct: 239 SRRSSERH------------RSSYDSDGSEERRAQIE 263
>ref|XP_002863733.1| hypothetical protein ARALYDRAFT_494737 [Arabidopsis lyrata subsp.
lyrata] gi|297309568|gb|EFH39992.1| hypothetical protein
ARALYDRAFT_494737 [Arabidopsis lyrata subsp. lyrata]
Length = 280
Score = 115 bits (288), Expect = 4e-24
Identities = 71/158 (44%), Positives = 87/158 (55%), Gaps = 11/158 (6%)
Frame = -1
Query: 441 KYEEEAAATLKAFKRRAYCGRKIIVDFSPVTDFRHAVCKRFEENGCDRGKFCNFLHVKQI 262
K E+ AAA L+A + R Y GR II DFSPVTDFR A C+++EEN C+RG +CNF+HVKQI
Sbjct: 117 KEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQI 176
Query: 261 GRALRRRLFGKNHXXXXXXXXXXXXXXXSYQTRSEGR---GGDNCYRGNYYGNGRRSADR 91
R LRR+LFG+ + R R GD R + +GNG+RS+DR
Sbjct: 177 SRELRRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDLRDR-DRHGNGKRSSDR 235
Query: 90 H--------GRYAGXXXXXXXXXXXXREGSEERRARIE 1
GR REGSEERRARIE
Sbjct: 236 SERHDRDGGGRRRHGSPKRSRSPRNVREGSEERRARIE 273
>ref|NP_199096.1| Splicing factor U2af small subunit B [Arabidopsis thaliana]
gi|42573547|ref|NP_974870.1| Splicing factor U2af small
subunit B [Arabidopsis thaliana]
gi|75334092|sp|Q9FMY5.1|U2AFB_ARATH RecName:
Full=Splicing factor U2af small subunit B; AltName:
Full=U2 auxiliary factor 35 kDa subunit B; AltName:
Full=U2 small nuclear ribonucleoprotein auxiliary factor
small subunit B; Short=U2 snRNP auxiliary factor small
subunit B; AltName: Full=Zinc finger CCCH
domain-containing protein 60; Short=AtC3H60
gi|10177285|dbj|BAB10638.1| U2 snRNP auxiliary factor,
small subunit [Arabidopsis thaliana]
gi|22531195|gb|AAM97101.1| U2 snRNP auxiliary factor
small subunit [Arabidopsis thaliana]
gi|23198022|gb|AAN15538.1| U2 snRNP auxiliary factor
small subunit [Arabidopsis thaliana]
gi|332007485|gb|AED94868.1| Splicing factor U2af small
subunit B [Arabidopsis thaliana]
gi|332007486|gb|AED94869.1| Splicing factor U2af small
subunit B [Arabidopsis thaliana]
Length = 283
Score = 115 bits (288), Expect = 4e-24
Identities = 71/158 (44%), Positives = 87/158 (55%), Gaps = 11/158 (6%)
Frame = -1
Query: 441 KYEEEAAATLKAFKRRAYCGRKIIVDFSPVTDFRHAVCKRFEENGCDRGKFCNFLHVKQI 262
K E+ AAA L+A + R Y GR II DFSPVTDFR A C+++EEN C+RG +CNF+HVKQI
Sbjct: 117 KEEDHAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQI 176
Query: 261 GRALRRRLFGKNHXXXXXXXXXXXXXXXSYQTRSEGR---GGDNCYRGNYYGNGRRSADR 91
R LRR+LFG+ + R R GD R + +GNG+RS+DR
Sbjct: 177 SRELRRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDR-DRHGNGKRSSDR 235
Query: 90 H--------GRYAGXXXXXXXXXXXXREGSEERRARIE 1
GR REGSEERRARIE
Sbjct: 236 SERHDRDGGGRRRHGSPKRSRSPRNVREGSEERRARIE 273