BLASTX nr result

ID: Cimicifuga21_contig00016964 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00016964
         (283 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putativ...    59   5e-07
ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06
ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion chann...    57   2e-06
ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|2...    55   4e-06
ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arab...    54   1e-05

>ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
           gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion
           channel, putative [Ricinus communis]
          Length = 838

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 28/56 (50%), Positives = 40/56 (71%)
 Frame = -3

Query: 170 MSYREEKFVRFQDWSSDKSLISERGFSNEDGLESGRFRSTVSSVSERIRRGFAWGS 3
           M+Y +EKFVRFQDW S+KS+  E  +S  DG+ S + R +++SVSE+ +RG   GS
Sbjct: 1   MNYSQEKFVRFQDWRSEKSM--ETQYSVSDGIHSRKIRMSITSVSEKFQRGLESGS 54


>ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1|
           predicted protein [Populus trichocarpa]
          Length = 708

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 27/56 (48%), Positives = 41/56 (73%)
 Frame = -3

Query: 170 MSYREEKFVRFQDWSSDKSLISERGFSNEDGLESGRFRSTVSSVSERIRRGFAWGS 3
           M+  +EKFVRFQDW S+K+  +E  +S  +G+  G+ R+T+SSVSE+++RG   GS
Sbjct: 1   MNQPQEKFVRFQDWKSEKT--TEGRYSASNGIYPGKIRTTISSVSEKVQRGLESGS 54


>ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera]
           gi|302143681|emb|CBI22542.3| unnamed protein product
           [Vitis vinifera]
          Length = 709

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 28/56 (50%), Positives = 39/56 (69%)
 Frame = -3

Query: 170 MSYREEKFVRFQDWSSDKSLISERGFSNEDGLESGRFRSTVSSVSERIRRGFAWGS 3
           M+YR+EKFVRFQDWSS++S  SE      +G+ SG+ R  ++SVS + +RG   GS
Sbjct: 1   MNYRQEKFVRFQDWSSERS--SEGKIPINNGVRSGKIRLAINSVSGKFQRGLECGS 54


>ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1|
           predicted protein [Populus trichocarpa]
          Length = 709

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 27/56 (48%), Positives = 40/56 (71%)
 Frame = -3

Query: 170 MSYREEKFVRFQDWSSDKSLISERGFSNEDGLESGRFRSTVSSVSERIRRGFAWGS 3
           M++ +EKFVRFQDW S+KS  +E  +S  + +  G+ R+T+SSVSE+ +RG   GS
Sbjct: 1   MNHPQEKFVRFQDWKSEKS--TEGNYSASNVMYPGKIRTTISSVSEKFQRGLESGS 54


>ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp.
           lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein
           ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata]
          Length = 716

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 24/52 (46%), Positives = 39/52 (75%)
 Frame = -3

Query: 170 MSYREEKFVRFQDWSSDKSLISERGFSNEDGLESGRFRSTVSSVSERIRRGF 15
           M++R+EKFVRFQDW SDK+  S+  ++  + +++G FR T+SS+S++  R F
Sbjct: 1   MNFRQEKFVRFQDWKSDKT-SSDVEYTGRNEIQTGIFRRTISSISDKFYRSF 51


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