BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00016896
         (2085 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267905.1| PREDICTED: pentatricopeptide repeat-containi...   664   0.0  
ref|XP_002269315.1| PREDICTED: pentatricopeptide repeat-containi...   650   0.0  
ref|XP_002526061.1| multidrug resistance pump, putative [Ricinus...   643   0.0  
ref|XP_002881217.1| pentatricopeptide repeat-containing protein ...   619   e-174
ref|NP_850186.1| proteinaceous RNase P 1 [Arabidopsis thaliana] ...   610   e-172

>ref|XP_002267905.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
            mitochondrial-like [Vitis vinifera]
          Length = 526

 Score =  664 bits (1712), Expect = 0.0
 Identities = 324/516 (62%), Positives = 392/516 (75%)
 Frame = +3

Query: 270  VNKNHYLCTSSLCAMAPRHNSSAAKLTTRSRKSQHKEYRESSEGLLRYKLDMCSKNGDLV 449
            +NK+ +    +L A       S+A   T S K++ K  RES EG+LR+KLDMCSK GD+V
Sbjct: 1    MNKSAHFSNLALSATNKYIPESSAVAETMSNKARKKARRESPEGVLRFKLDMCSKRGDVV 60

Query: 450  KALCLYDDSRSKKVSLSKHHYNVLLYLCSSSDCKEKDEKNINLGLRRGFEIFQQMGIDGI 629
            +AL LYD++RS+ V LS+HHYNVLLYLCS S     DE  +NL L+RGFEIF+QMG+DGI
Sbjct: 61   EALRLYDEARSRGVPLSQHHYNVLLYLCSCSG-SNGDENVVNLALKRGFEIFKQMGVDGI 119

Query: 630  APSEATFTSVARIAVKMEDPEMAFELVKKMTSSNIPPRLRSYEPALFGFCKKGEADKAYE 809
             P+EATFTS AR+A  MEDPEMAF LVK+M S  IPP+LRSY P LFGFCKKG+AD+AYE
Sbjct: 120  EPNEATFTSAARLACAMEDPEMAFNLVKQMKSCGIPPKLRSYGPPLFGFCKKGDADRAYE 179

Query: 810  VDAHMLASGVSPEEPQLAALLQVSVNVERADKVYEMLHRMRASVRQVSDHTAEVIEEWFK 989
            VDAHM+ SGV  EEP+L ALL +SV   R D+VYEM+HR+RASVRQVS+ TAEV+E WF 
Sbjct: 180  VDAHMMESGVVAEEPELCALLGLSVESRRVDRVYEMVHRLRASVRQVSESTAEVVERWFN 239

Query: 990  SKAAMEAGKERWDAXXXXXXXXXXXXXXXXXXXXXXXXWKVERTEMDENGVCRCCGERLV 1169
            S+ A   G+E WD                         WKV RTEMDE GVC+ CGE+LV
Sbjct: 240  SEDAAGVGEENWDVGKVREGVVKGGGGWHGQGWLGKGKWKVVRTEMDEAGVCQSCGEKLV 299

Query: 1170 CIDIDPLETENFANLVYSLAHKREAMPEFNKFQDWLRCNGPFDAVIDGANVSLNNGHSFS 1349
            CIDIDP ETENFA+ +  LA +RE   +F +FQ+WL+ +GPFDAV+DGANVSL N  SFS
Sbjct: 300  CIDIDPRETENFASSLTKLACQREVKADFVQFQEWLQRHGPFDAVVDGANVSLINQKSFS 359

Query: 1350 FFQLNAAVERIRKLSPTKRWPLIILHQSRVVGGPANSPNNMKLLEKWRTAGALYTTPQGP 1529
            FF+LN+ V R+R++SP+KR PL+ILH+SRV GGPA +PNN KL+E W+ +GALY TP G 
Sbjct: 360  FFELNSVVNRLRQISPSKRLPLVILHRSRVTGGPAQNPNNKKLIESWKKSGALYATPAGS 419

Query: 1530 NDDWYWLYAAVSSKCLLVTNDEMRDHLFQLLGTSFFRRWKEKHQVRFTMSREGTTLHMPP 1709
            NDDWYWLYAAV+  CLLVTNDEMRDHLFQLLGTSFF RWKEKHQVR T++R G  LHMPP
Sbjct: 420  NDDWYWLYAAVNCNCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLTITRRGPVLHMPP 479

Query: 1710 PYSIVIQESERGSWHIPIVIEGDDIDTPRRWVCATR 1817
            PYSIVIQESE+GSWH+P  + GDD++TPR+W+CATR
Sbjct: 480  PYSIVIQESEQGSWHVP-TVTGDDLETPRQWLCATR 514


>ref|XP_002269315.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230,
            mitochondrial-like [Vitis vinifera]
          Length = 895

 Score =  650 bits (1677), Expect = 0.0
 Identities = 324/527 (61%), Positives = 394/527 (74%)
 Frame = +3

Query: 237  PITKNTIFDFPVNKNHYLCTSSLCAMAPRHNSSAAKLTTRSRKSQHKEYRESSEGLLRYK 416
            P  K+ IF   +NK+ +    +L A       S+A   T S K++ K  RES EG+LR+K
Sbjct: 362  PYIKDRIF---MNKSAHFSNLALSATNKYIPESSAAAKTMSNKARKKARRESPEGVLRFK 418

Query: 417  LDMCSKNGDLVKALCLYDDSRSKKVSLSKHHYNVLLYLCSSSDCKEKDEKNINLGLRRGF 596
            LDMCSK GD+V+AL LYD++RS  V LS+H+YNVLLYLCS S     DE  +NL L+RGF
Sbjct: 419  LDMCSKRGDVVEALRLYDEARSLGVPLSQHNYNVLLYLCSCSG-SNGDENVVNLALKRGF 477

Query: 597  EIFQQMGIDGIAPSEATFTSVARIAVKMEDPEMAFELVKKMTSSNIPPRLRSYEPALFGF 776
            EIF+QMG+DGI P+EATFTS AR+A  MEDPEMAF LVK+M S  IPP+LRSY P LFGF
Sbjct: 478  EIFKQMGVDGIEPNEATFTSAARLACAMEDPEMAFNLVKQMKSCGIPPKLRSYGPPLFGF 537

Query: 777  CKKGEADKAYEVDAHMLASGVSPEEPQLAALLQVSVNVERADKVYEMLHRMRASVRQVSD 956
            CKKG+A++AYEVDAHM+ SGV  EEP+L ALL +SV     D+VYEM+HR+RASVRQVS+
Sbjct: 538  CKKGDANRAYEVDAHMVESGVVAEEPELCALLGLSVESRWVDQVYEMMHRLRASVRQVSE 597

Query: 957  HTAEVIEEWFKSKAAMEAGKERWDAXXXXXXXXXXXXXXXXXXXXXXXXWKVERTEMDEN 1136
             TAEV+E WF S+ A   G+E WD                         WKV RTEMDE 
Sbjct: 598  STAEVVERWFNSEDAAGVGEENWDVGKVREGVVKGGGGWHGQGWLGKGKWKVGRTEMDEA 657

Query: 1137 GVCRCCGERLVCIDIDPLETENFANLVYSLAHKREAMPEFNKFQDWLRCNGPFDAVIDGA 1316
            GVC+ CGE+LV IDIDP ETENFA+ +  LA +RE   +F +FQ+WL+ +GPFDAV+DGA
Sbjct: 658  GVCQSCGEKLVGIDIDPRETENFASSLTKLACQREVKADFVQFQEWLQWHGPFDAVVDGA 717

Query: 1317 NVSLNNGHSFSFFQLNAAVERIRKLSPTKRWPLIILHQSRVVGGPANSPNNMKLLEKWRT 1496
            NVSL N  SFSFF+LN+ V  +R++SP+K+ PL+ILH+SRV GGPA +PNN KL++ W+ 
Sbjct: 718  NVSLINQKSFSFFELNSVVNCLRQISPSKQLPLVILHRSRVTGGPAQNPNNEKLIQSWKK 777

Query: 1497 AGALYTTPQGPNDDWYWLYAAVSSKCLLVTNDEMRDHLFQLLGTSFFRRWKEKHQVRFTM 1676
            +GALY TP G NDDWYWLYAAV+  CLLVTNDEMRDHLFQLLGTSFF RWKEKHQVR TM
Sbjct: 778  SGALYATPAGSNDDWYWLYAAVNGNCLLVTNDEMRDHLFQLLGTSFFPRWKEKHQVRLTM 837

Query: 1677 SREGTTLHMPPPYSIVIQESERGSWHIPIVIEGDDIDTPRRWVCATR 1817
            +R G  LHMPPPYSIVIQESE+GSWH+P VI GDD++TPR+W+CATR
Sbjct: 838  TRRGPVLHMPPPYSIVIQESEQGSWHVPTVI-GDDLETPRQWLCATR 883


>ref|XP_002526061.1| multidrug resistance pump, putative [Ricinus communis]
            gi|223534642|gb|EEF36338.1| multidrug resistance pump,
            putative [Ricinus communis]
          Length = 589

 Score =  643 bits (1658), Expect = 0.0
 Identities = 316/542 (58%), Positives = 398/542 (73%), Gaps = 5/542 (0%)
 Frame = +3

Query: 207  LHYPSFLSPKPITKNTIFDFPVNKNHYLCTSSLCAMAPRHNSSAAKLTTRSRKSQHKEYR 386
            LHY  ++ PKP+       F + +    C+S+L A    H SSA      S K++ K  +
Sbjct: 42   LHYHYYVFPKPVCNIQASRFCMERRVQFCSSALSAKPQIHESSALAAKKVSNKAKKKARQ 101

Query: 387  ESSEGLLRYKLDMCSKNGDLVKALCLYDDSRSKKVSLSKHHYNVLLYLCSSSDCKE---- 554
            ES EG+LR K+D CSK+G+LV+AL LYD++R   V L++HHYNVLLYLCSS    E    
Sbjct: 102  ESPEGVLRSKIDNCSKHGNLVEALRLYDEARINGVQLNQHHYNVLLYLCSSGSSVELGGN 161

Query: 555  -KDEKNINLGLRRGFEIFQQMGIDGIAPSEATFTSVARIAVKMEDPEMAFELVKKMTSSN 731
              +EK  N+  +RGFEIFQQM ID + P+EATFT+ AR+A+ MEDPEMAF+L+K+M   +
Sbjct: 162  GANEKASNMQFKRGFEIFQQMVIDKVPPNEATFTNAARLAIAMEDPEMAFDLIKQMKCFD 221

Query: 732  IPPRLRSYEPALFGFCKKGEADKAYEVDAHMLASGVSPEEPQLAALLQVSVNVERADKVY 911
            I P+LRSY PALFGFCKKG AD+AY VDAHM  SGV PEEP+L+ALL++SV+++RADKVY
Sbjct: 222  ILPKLRSYGPALFGFCKKGMADRAYAVDAHMAESGVMPEEPELSALLKLSVDIKRADKVY 281

Query: 912  EMLHRMRASVRQVSDHTAEVIEEWFKSKAAMEAGKERWDAXXXXXXXXXXXXXXXXXXXX 1091
            EMLHR+RA+VRQV++ T ++IE WFKS+ A + G+E+WD                     
Sbjct: 282  EMLHRLRATVRQVTETTIDIIEAWFKSEDASKIGEEKWDVSKVREGVVRGGGGWHGQGWL 341

Query: 1092 XXXXWKVERTEMDENGVCRCCGERLVCIDIDPLETENFANLVYSLAHKREAMPEFNKFQD 1271
                W+V RT++D   VC  C E+LVCIDIDP ETENFA  + +LA +RE   +F +FQ+
Sbjct: 342  GSGQWRVVRTQIDAKAVCNSCSEKLVCIDIDPSETENFATSLTNLACQREVKADFVRFQE 401

Query: 1272 WLRCNGPFDAVIDGANVSLNNGHSFSFFQLNAAVERIRKLSPTKRWPLIILHQSRVVGGP 1451
            WL+ +GPFDAVIDGAN+ L N  +FSF QLN  V ++R++SP+KR PLIILH+SRV GGP
Sbjct: 402  WLQKHGPFDAVIDGANLGLINQTNFSFRQLNTVVSKLRQMSPSKRLPLIILHRSRVTGGP 461

Query: 1452 ANSPNNMKLLEKWRTAGALYTTPQGPNDDWYWLYAAVSSKCLLVTNDEMRDHLFQLLGTS 1631
            A +PNNMKLLE W+ +GALY TP G NDDWYWLYAAVS  CLLVTNDEMRDHLFQLLGTS
Sbjct: 462  AQNPNNMKLLEFWKKSGALYATPTGSNDDWYWLYAAVSCNCLLVTNDEMRDHLFQLLGTS 521

Query: 1632 FFRRWKEKHQVRFTMSREGTTLHMPPPYSIVIQESERGSWHIPIVIEGDDIDTPRRWVCA 1811
            FF RWKEKHQVR ++SR G  LHMPPPYSIVIQESE GSWH+P + E DD++TPR+W+CA
Sbjct: 522  FFPRWKEKHQVRLSVSRSGIALHMPPPYSIVIQESENGSWHVPTISE-DDLETPRQWLCA 580

Query: 1812 TR 1817
            +R
Sbjct: 581  SR 582


>ref|XP_002881217.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297327056|gb|EFH57476.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 572

 Score =  619 bits (1595), Expect = e-174
 Identities = 309/520 (59%), Positives = 386/520 (74%), Gaps = 1/520 (0%)
 Frame = +3

Query: 270  VNKNHYLCTSSLCAMAPRHNSSAAKLTTRSRKSQHKEYRESSEGLLRYKLDMCSKNGDLV 449
            V ++ +LCT  L A      S+A+     SRK++ K  ++S E LL+ KLDMCSK GD++
Sbjct: 58   VERSRHLCTMPLAAAK---QSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVL 114

Query: 450  KALCLYDDSRSKKVSLSKHHYNVLLYLCSSSDCKEKDEKNINLGLRRGFEIFQQMGIDGI 629
            +AL LYD++R   V LS++HYNVLLY+CS ++     E + N GL RGF+IF+QM +D +
Sbjct: 115  EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAAT--ESSPNPGLSRGFDIFKQMIVDKV 172

Query: 630  APSEATFTSVARIAVKMEDPEMAFELVKKMTSSNIPPRLRSYEPALFGFCKKGEADKAYE 809
             P+EATFT+ AR+AV  +DPEMAF++VK+M +  I PRLRSY PALFGFC+KG+A KAYE
Sbjct: 173  VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDAGKAYE 232

Query: 810  VDAHMLASGVSPEEPQLAALLQVSVNVERADKVYEMLHRMRASVRQVSDHTAEVIEEWFK 989
            VDAHM+ S V PEEP+LAALL+VS++ + ADKVYEML R+R  VRQVS  T + IEEWFK
Sbjct: 233  VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYEMLQRLRDLVRQVSKSTFDTIEEWFK 292

Query: 990  SKAAMEAGKERWDAXXXXXXXXXXXXXXXXXXXXXXXXWKVERTEMDENGVCRCCGERLV 1169
            S+AA +AG ++WD                         W V+RTEMDENGVC+CC E+LV
Sbjct: 293  SEAAAKAGVKKWDVKKIRDAVESGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLV 352

Query: 1170 CIDIDPLETENFANLVYSLAHKREAMPEFNKFQDWLRCNGPFDAVIDGANVSLNNGHSFS 1349
            CIDI+P+ETE FA  +  LA +RE    FN+FQ+WL  +GPFDAVIDGAN+ L N  SFS
Sbjct: 353  CIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFS 412

Query: 1350 FFQLNAAVERIRKLSPTKRWPLIILHQSRVVGGPANSPNNMKLLEKWRTAGALYTTPQGP 1529
            FFQLN  V+R +++SP+KR PL+ILH+SRV GGPA  P N  LLEKW+ AGALY TP G 
Sbjct: 413  FFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGS 472

Query: 1530 NDDWYWLYAAVSSKCLLVTNDEMRDHLFQLLGTSFFRRWKEKHQVRFTMSRE-GTTLHMP 1706
            NDDWYWLYAAV+ KCLLVTNDEMRDHLFQLLG SFF RWKEKHQVR ++SRE G TLHMP
Sbjct: 473  NDDWYWLYAAVTYKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVSREDGLTLHMP 532

Query: 1707 PPYSIVIQESERGSWHIPIVIEGDDIDTPRRWVCATRAST 1826
            PPYSIVIQESE G+WH+P+ +E DD+ T R+W+CA R+ T
Sbjct: 533  PPYSIVIQESEDGTWHVPMSVE-DDLQTSRQWLCAKRSKT 571


>ref|NP_850186.1| proteinaceous RNase P 1 [Arabidopsis thaliana]
            gi|75115346|sp|Q66GI4.1|PRRP1_ARATH RecName:
            Full=Proteinaceous RNase P 1,
            chloroplastic/mitochondrial; AltName:
            Full=Pentatricopeptide repeat-containing protein
            At2g32230; Flags: Precursor gi|51536606|gb|AAU05541.1|
            At2g32230 [Arabidopsis thaliana]
            gi|330253558|gb|AEC08652.1| proteinaceous RNase P 1
            [Arabidopsis thaliana]
          Length = 572

 Score =  610 bits (1572), Expect = e-172
 Identities = 304/520 (58%), Positives = 384/520 (73%), Gaps = 1/520 (0%)
 Frame = +3

Query: 270  VNKNHYLCTSSLCAMAPRHNSSAAKLTTRSRKSQHKEYRESSEGLLRYKLDMCSKNGDLV 449
            V ++ +LCT  L A      S+A+     SRK++ K  ++S E LL+ KLDMCSK GD++
Sbjct: 58   VERSRHLCTLPLAAAK---QSAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVL 114

Query: 450  KALCLYDDSRSKKVSLSKHHYNVLLYLCSSSDCKEKDEKNINLGLRRGFEIFQQMGIDGI 629
            +AL LYD++R   V LS++HYNVLLY+CS ++     E + N GL RGF+IF+QM +D +
Sbjct: 115  EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAAT--ESSPNPGLSRGFDIFKQMIVDKV 172

Query: 630  APSEATFTSVARIAVKMEDPEMAFELVKKMTSSNIPPRLRSYEPALFGFCKKGEADKAYE 809
             P+EATFT+ AR+AV  +DPEMAF++VK+M +  I PRLRSY PALFGFC+KG+ADKAYE
Sbjct: 173  VPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYE 232

Query: 810  VDAHMLASGVSPEEPQLAALLQVSVNVERADKVYEMLHRMRASVRQVSDHTAEVIEEWFK 989
            VDAHM+ S V PEEP+LAALL+VS++ + ADKVY+ L R+R  VRQVS  T ++IEEWFK
Sbjct: 233  VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 292

Query: 990  SKAAMEAGKERWDAXXXXXXXXXXXXXXXXXXXXXXXXWKVERTEMDENGVCRCCGERLV 1169
            S+ A + G ++WD                         W V+RTEMDENGVC+CC E+LV
Sbjct: 293  SEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLV 352

Query: 1170 CIDIDPLETENFANLVYSLAHKREAMPEFNKFQDWLRCNGPFDAVIDGANVSLNNGHSFS 1349
            CIDI+P+ETE FA  +  LA +RE    FN+FQ+WL  +GPFDAVIDGAN+ L N  SFS
Sbjct: 353  CIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFS 412

Query: 1350 FFQLNAAVERIRKLSPTKRWPLIILHQSRVVGGPANSPNNMKLLEKWRTAGALYTTPQGP 1529
            FFQLN  V+R +++SP+KR PL+ILH+SRV GGPA  P N  LLEKW+ AGALY TP G 
Sbjct: 413  FFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGS 472

Query: 1530 NDDWYWLYAAVSSKCLLVTNDEMRDHLFQLLGTSFFRRWKEKHQVRFTMSRE-GTTLHMP 1706
            NDDWYWLYAAVS KCLLVTNDEMRDHLFQLLG SFF RWKEKHQVR +++RE G  L+MP
Sbjct: 473  NDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNMP 532

Query: 1707 PPYSIVIQESERGSWHIPIVIEGDDIDTPRRWVCATRAST 1826
            PPYSIVIQESE G+WH+P+ +E DD+ T R+W+CA R+ T
Sbjct: 533  PPYSIVIQESEDGTWHVPMSVE-DDLQTSRQWLCAKRSKT 571