BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00016886
         (348 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containi...   108   6e-22
ref|XP_002518527.1| pentatricopeptide repeat-containing protein,...   102   2e-20
ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|2...    91   8e-17
gb|AFV70833.1| tetratricopeptide repeat-like superfamily protein...    72   6e-11
gb|AFV70831.1| tetratricopeptide repeat-like superfamily protein...    70   1e-10

>ref|XP_002264956.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21170-like [Vitis vinifera]
          Length = 569

 Score =  108 bits (269), Expect = 6e-22
 Identities = 50/98 (51%), Positives = 74/98 (75%)
 Frame = -1

Query: 297 RQNWLPFIQKLNLSSKLNPAVFLQILRKTQKHPEISLNFFKWAATNLGFRPDLKSHSQLV 118
           R NW+  ++  NLSSKL P++F QIL KTQK+P+ SL+FF W  TNLGF+PDL +HSQ++
Sbjct: 42  RHNWVTLLRNFNLSSKLTPSLFHQILLKTQKNPQSSLSFFNWVRTNLGFQPDLAAHSQII 101

Query: 117 LILLHSGLIKPAKRLLVHSVIGSEPVGVVMDSMMETCK 4
            I + SGL +PAK +L  S+I ++ V V++DS+++ C+
Sbjct: 102 RISIQSGLFQPAKGIL-DSLIETQKVSVLVDSVIQACR 138


>ref|XP_002518527.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223542372|gb|EEF43914.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 599

 Score =  102 bits (255), Expect = 2e-20
 Identities = 49/98 (50%), Positives = 68/98 (69%)
 Frame = -1

Query: 297 RQNWLPFIQKLNLSSKLNPAVFLQILRKTQKHPEISLNFFKWAATNLGFRPDLKSHSQLV 118
           R NW+P +Q LNLSSKL P +F QIL KTQ H +ISLNFF WA TNL F PDLKS   ++
Sbjct: 63  RNNWIPLLQNLNLSSKLTPFLFFQILHKTQTHAQISLNFFNWAKTNLNFNPDLKSQCHVI 122

Query: 117 LILLHSGLIKPAKRLLVHSVIGSEPVGVVMDSMMETCK 4
            + L S L + AK++L  S+I + P  + +++M++ C+
Sbjct: 123 QLSLGSDLPRAAKKIL-DSLIKTYPSNLFLETMVQACR 159


>ref|XP_002305605.1| predicted protein [Populus trichocarpa] gi|222848569|gb|EEE86116.1|
           predicted protein [Populus trichocarpa]
          Length = 564

 Score = 91.3 bits (225), Expect = 8e-17
 Identities = 43/98 (43%), Positives = 66/98 (67%)
 Frame = -1

Query: 297 RQNWLPFIQKLNLSSKLNPAVFLQILRKTQKHPEISLNFFKWAATNLGFRPDLKSHSQLV 118
           R NW+  +Q  NLS+KL P +F QIL KTQ +P+ISL FF W  TNL  +PDLKS   ++
Sbjct: 34  RHNWVSLLQNFNLSTKLTPPLFNQILHKTQTNPQISLRFFNWVQTNLKLKPDLKSQCHII 93

Query: 117 LILLHSGLIKPAKRLLVHSVIGSEPVGVVMDSMMETCK 4
            I ++SGL  P  R ++ S++ +  V V+ ++M+++C+
Sbjct: 94  NICVNSGLTLPV-RPIMDSLVKTHHVSVLGEAMVDSCR 130


>gb|AFV70833.1| tetratricopeptide repeat-like superfamily protein, partial
           [Arabidopsis halleri]
          Length = 186

 Score = 71.6 bits (174), Expect = 6e-11
 Identities = 39/96 (40%), Positives = 63/96 (65%), Gaps = 3/96 (3%)
 Frame = -1

Query: 297 RQNW---LPFIQKLNLSSKLNPAVFLQILRKTQKHPEISLNFFKWAATNLGFRPDLKSHS 127
           R+NW   LP+++     S L   +FLQILR+T+K P+ +L+FF +A T+L F PDLKSH 
Sbjct: 35  RRNWITHLPYVKSKLSRSTLTSPIFLQILRETRKCPKTTLDFFDFAKTHLRFDPDLKSHC 94

Query: 126 QLVLILLHSGLIKPAKRLLVHSVIGSEPVGVVMDSM 19
           +++ +   SGL++ A+ LL   ++ +  V +V+ SM
Sbjct: 95  RVIEVATESGLLERAETLL-RPLVETHSVSLVVGSM 129


>gb|AFV70831.1| tetratricopeptide repeat-like superfamily protein, partial
           [Arabidopsis halleri]
          Length = 186

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 40/97 (41%), Positives = 66/97 (68%), Gaps = 4/97 (4%)
 Frame = -1

Query: 297 RQNWLPFIQ----KLNLSSKLNPAVFLQILRKTQKHPEISLNFFKWAATNLGFRPDLKSH 130
           R+NW+  +Q    KL+ S+  +P +FLQILR+T+K P+ +L+FF +A T+L F PDLKSH
Sbjct: 35  RRNWITHLQYVKSKLSRSTLTSP-IFLQILRETRKCPKTTLDFFDFAKTHLRFDPDLKSH 93

Query: 129 SQLVLILLHSGLIKPAKRLLVHSVIGSEPVGVVMDSM 19
            +++ +   SGL++ A+ LL   ++ +  V +V+ SM
Sbjct: 94  CRVIEVATESGLLERAETLL-RPLVETHSVSLVVGSM 129