BLASTX nr result

ID: Cimicifuga21_contig00016821 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00016821
         (428 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633567.1| PREDICTED: putative disease resistance prote...    56   3e-06
ref|XP_002335820.1| nbs-lrr resistance protein [Populus trichoca...    55   5e-06

>ref|XP_003633567.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis
            vinifera]
          Length = 1307

 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 48/168 (28%), Positives = 73/168 (43%), Gaps = 37/168 (22%)
 Frame = +1

Query: 13   PHTLKELTISNCPELKGMQPC----LPPLMEKLDLMGDAGV--FSKSLPVNNECFIRSVY 174
            P  L+EL I  C +L          L  L   +   G  GV  FSK   + +     S+Y
Sbjct: 1137 PSNLRELAIVRCNQLTSQVDWDLQKLTSLTRFIIQGGCEGVELFSKECLLPSSLTYLSIY 1196

Query: 175  ISNSPHSSLPKGFNQLKAVQELYFEDCKSLDFELKE------LEHLTVLQ---------- 306
               +  S   KG  QL ++ +L+ E+C  L F  +       L H+T L+          
Sbjct: 1197 SLPNLKSLDNKGLQQLTSLLQLHIENCPELQFSTRSVLQQAGLHHVTTLENLILFNCPKL 1256

Query: 307  -------------YLYICNCPLLKE--HFQQGEDWRSILSHVARIIIE 405
                         YLY+  CPLLK+   F++G++WR I SH+ +I+I+
Sbjct: 1257 QYLTKERLPDSLSYLYVSRCPLLKQQLRFEKGQEWRYI-SHIPKIVID 1303


>ref|XP_002335820.1| nbs-lrr resistance protein [Populus trichocarpa]
            gi|222834992|gb|EEE73441.1| nbs-lrr resistance protein
            [Populus trichocarpa]
          Length = 825

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 42/137 (30%), Positives = 73/137 (53%), Gaps = 9/137 (6%)
 Frame = +1

Query: 22   LKELTISNCPELKGM-QPCLPPL--MEKLDLMGDAGVFSKSLPVNNECFIRSV----YIS 180
            LK LTI  C EL+ + +  L  L  +E L+++    +    LP+N  C + S+     + 
Sbjct: 692  LKSLTIGGCDELESLPEEGLRNLNSLEVLEIIKCGRL--NCLPMNGLCGLSSLRKLSVVG 749

Query: 181  NSPHSSLPKGFNQLKAVQELYFEDCKSLDFELKELEHLTVLQYLYICNCPLLKEHFQQ-- 354
                +SL +G   L  +++L   +C  L+   + ++HLT L+ L+I  CP LK+ +++  
Sbjct: 750  CDKFTSLSEGVRHLTVLEDLELVNCPELNSLPESIQHLTSLRSLFIWGCPNLKKRYEKDV 809

Query: 355  GEDWRSILSHVARIIIE 405
            GEDW  I +H+  I I+
Sbjct: 810  GEDWPKI-AHIPDINIQ 825


Top