BLASTX nr result
ID: Cimicifuga21_contig00016714
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Cimicifuga21_contig00016714
(791 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containi... 385 e-105
ref|XP_002519323.1| pentatricopeptide repeat-containing protein,... 321 1e-85
ref|XP_002328762.1| predicted protein [Populus trichocarpa] gi|2... 298 9e-79
ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containi... 297 2e-78
emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera] 219 5e-55
>ref|XP_002263755.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Vitis vinifera]
Length = 624
Score = 385 bits (990), Expect = e-105
Identities = 185/250 (74%), Positives = 216/250 (86%)
Frame = -3
Query: 750 IESCSTMAELKQFHSKFIRLGLSADNDAMGRLVKFSAVSESGDLNYALQVFDKIPQPDAF 571
++SCSTMAELKQ+HS+ IRLGLSADNDAMGR++KF A+S+SGDLNYAL+VFDKIP PDA+
Sbjct: 27 LDSCSTMAELKQYHSQIIRLGLSADNDAMGRVIKFCAISKSGDLNYALEVFDKIPHPDAY 86
Query: 570 IYNTIIKGYLEAQLTDNCIFFYSRMLQELVAPNSFTFPSVVRACYISNATEEGKQLHAHV 391
IYNTI +GYL QL NCIF YSRML + V+PN FT+P ++RAC I A EEGKQ+HAHV
Sbjct: 87 IYNTIFRGYLRWQLARNCIFMYSRMLHKSVSPNKFTYPPLIRACCIDYAIEEGKQIHAHV 146
Query: 390 FKFGFGENVVTQNNLINMYVNFQCLDEAQRVFDKMSQRDVVSWTTLITGYSRLGLVDEAY 211
KFGFG + + NNLI+MYVNFQ L++A+RVFD M QRDVVSWT+LITGYS+ G VD+A
Sbjct: 147 LKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYSQWGFVDKAR 206
Query: 210 KVFELMPKRNSVTWNAMMAAYVQSNRFREAFALFDRMRLEKVDFDKFVTASMLSACTGLG 31
+VFELMP+RNSV+WNAM+AAYVQSNR EAFALFDRMRLE V DKFV ASMLSACTGLG
Sbjct: 207 EVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAASMLSACTGLG 266
Query: 30 ALEQGEWIHG 1
ALEQG+WIHG
Sbjct: 267 ALEQGKWIHG 276
Score = 81.3 bits (199), Expect = 2e-13
Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 33/242 (13%)
Frame = -3
Query: 726 ELKQFHSKFIRLGLSADNDAMGRLVKF-----------------------------SAVS 634
E KQ H+ ++ G AD ++ L+ + S
Sbjct: 138 EGKQIHAHVLKFGFGADGFSLNNLIHMYVNFQSLEQARRVFDNMPQRDVVSWTSLITGYS 197
Query: 633 ESGDLNYALQVFDKIPQPDAFIYNTIIKGYLEAQLTDNCIFFYSRMLQELVAPNSFTFPS 454
+ G ++ A +VF+ +P+ ++ +N +I Y+++ + RM E V + F S
Sbjct: 198 QWGFVDKAREVFELMPERNSVSWNAMIAAYVQSNRLHEAFALFDRMRLENVVLDKFVAAS 257
Query: 453 VVRACYISNATEEGKQLHAHVFKFGFGENVVTQNNLINMYVNFQCLDEAQRVFDKMSQRD 274
++ AC A E+GK +H ++ K G + +I+MY CL++A VF+++ Q+
Sbjct: 258 MLSACTGLGALEQGKWIHGYIEKSGIELDSKLATTVIDMYCKCGCLEKASEVFNELPQKG 317
Query: 273 VVSWTTLITGYSRLGLVDEAYKVFELMPKR----NSVTWNAMMAAYVQSNRFREAFALFD 106
+ SW +I G + G + A ++F+ M + + +T+ +++A S E F
Sbjct: 318 ISSWNCMIGGLAMHGKGEAAIELFKEMEREMVAPDGITFVNVLSACAHSGLVEEGKHYFQ 377
Query: 105 RM 100
M
Sbjct: 378 YM 379
>ref|XP_002519323.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223541638|gb|EEF43187.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 396
Score = 321 bits (823), Expect = 1e-85
Identities = 154/248 (62%), Positives = 192/248 (77%)
Frame = -3
Query: 744 SCSTMAELKQFHSKFIRLGLSADNDAMGRLVKFSAVSESGDLNYALQVFDKIPQPDAFIY 565
+CSTM +L+Q+HS+ IRLGLSAD M +L+ FSA+S + DL YA+++FD IP PDAF Y
Sbjct: 53 NCSTMPDLRQYHSQIIRLGLSADKHVMTQLINFSALSNNRDLAYAIKLFDSIPNPDAFFY 112
Query: 564 NTIIKGYLEAQLTDNCIFFYSRMLQELVAPNSFTFPSVVRACYISNATEEGKQLHAHVFK 385
NTIIK YL+ N I YS MLQ V PN FTFPSV+RAC I + + GKQ+HAHV K
Sbjct: 113 NTIIKAYLQHLSPTNSILLYSHMLQHSVFPNDFTFPSVIRACCIHDDIQLGKQIHAHVLK 172
Query: 384 FGFGENVVTQNNLINMYVNFQCLDEAQRVFDKMSQRDVVSWTTLITGYSRLGLVDEAYKV 205
GFG +V++ NNLI+MY FQ +EA+ V M +++ +SWTTLI+GYS+ GLVDEA++V
Sbjct: 173 LGFGAHVISLNNLIHMYARFQAFEEARCVLYSMPEQNFISWTTLISGYSQWGLVDEAFRV 232
Query: 204 FELMPKRNSVTWNAMMAAYVQSNRFREAFALFDRMRLEKVDFDKFVTASMLSACTGLGAL 25
F+ MP+RNS +WNAM+AAYVQ NRF E+FALFDRMR E V DKFV A+MLSACTGLGAL
Sbjct: 233 FQSMPERNSASWNAMIAAYVQGNRFHESFALFDRMRAEGVVLDKFVAATMLSACTGLGAL 292
Query: 24 EQGEWIHG 1
EQG+WIHG
Sbjct: 293 EQGKWIHG 300
Score = 70.5 bits (171), Expect = 4e-10
Identities = 43/175 (24%), Positives = 86/175 (49%), Gaps = 4/175 (2%)
Frame = -3
Query: 645 SAVSESGDLNYALQVFDKIPQPDAFIYNTIIKGYLEAQLTDNCIFFYSRMLQELVAPNSF 466
S S+ G ++ A +VF +P+ ++ +N +I Y++ + RM E V + F
Sbjct: 218 SGYSQWGLVDEAFRVFQSMPERNSASWNAMIAAYVQGNRFHESFALFDRMRAEGVVLDKF 277
Query: 465 TFPSVVRACYISNATEEGKQLHAHVFKFGFGENVVTQNNLINMYVNFQCLDEAQRVFDKM 286
+++ AC A E+GK +H ++ K G ++ +I+MY L++A VF +
Sbjct: 278 VAATMLSACTGLGALEQGKWIHGYIEKKGIEKDSKLATAIIDMYCKCGSLEKALEVFKGL 337
Query: 285 SQRDVVSWTTLITGYSRLGLVDEAYKVFELMPKR----NSVTWNAMMAAYVQSNR 133
+ + SW +I G + G + A ++F+ M K + +T+ +++A S +
Sbjct: 338 PHKGISSWNCMIGGLAMHGKGEAAIELFKEMEKEMLAPDRITFVNLLSACAHSEK 392
>ref|XP_002328762.1| predicted protein [Populus trichocarpa] gi|222839060|gb|EEE77411.1|
predicted protein [Populus trichocarpa]
Length = 632
Score = 298 bits (763), Expect = 9e-79
Identities = 147/252 (58%), Positives = 194/252 (76%), Gaps = 4/252 (1%)
Frame = -3
Query: 747 ESCSTMAELKQFHSKFIRLGLSADNDAMGRLVKFSAVSESGD-LNYALQVFDKIPQPDAF 571
E C +M++L+Q+HS+ IRLGLS+ N + L+ F A + + D L YAL++FD IPQPDAF
Sbjct: 30 EKCQSMSQLRQYHSQIIRLGLSSHNHLIPPLINFCARASTSDALTYALKLFDSIPQPDAF 89
Query: 570 IYNTIIKGYLEAQL--TDNCIFFYSRMLQELVAPNSFTFPSVVRACYISNATEEGKQLHA 397
+YNTIIKG+L +QL T++ + YS MLQ V PN+FTFPS++ AC + G Q+HA
Sbjct: 90 LYNTIIKGFLHSQLLPTNSILLLYSHMLQNSVLPNNFTFPSLLIAC---RKIQHGMQIHA 146
Query: 396 HVFKFGFGENVVTQNNLINMYVNFQCLDEAQRVFDKMSQRDVVSWTTLITGYSRLGLVDE 217
H+FKFGFG + V N+LI+MYV FQ L+EA+RVF + D VSWT+LI+GYS+ GL+DE
Sbjct: 147 HLFKFGFGAHSVCLNSLIHMYVTFQALEEARRVFHTIPHPDSVSWTSLISGYSKWGLIDE 206
Query: 216 AYKVFELMPKRNSVTWNAMMAAYVQSNRFREAFALFDRMRLEKVD-FDKFVTASMLSACT 40
A+ +F+LMP++NS +WNAMMAAYVQ+NRF EAFALFDRM+ E + DKFV +MLSACT
Sbjct: 207 AFTIFQLMPQKNSASWNAMMAAYVQTNRFHEAFALFDRMKAENNNVLDKFVATTMLSACT 266
Query: 39 GLGALEQGEWIH 4
GLGAL+QG+WIH
Sbjct: 267 GLGALDQGKWIH 278
Score = 69.3 bits (168), Expect = 9e-10
Identities = 63/271 (23%), Positives = 114/271 (42%), Gaps = 16/271 (5%)
Frame = -3
Query: 780 PNNARPTFQSIE-SCSTMAELKQFHSKFIRLGLSADNDAMGRLVKFSAVSESGDLNYALQ 604
PNN TF S+ +C + Q H+ + G A + + L+ ++ L A +
Sbjct: 123 PNNF--TFPSLLIACRKIQHGMQIHAHLFKFGFGAHSVCLNSLIHMYVTFQA--LEEARR 178
Query: 603 VFDKIPQPDAFIYNTIIKGYLEAQLTDNCIFFYSRMLQELVAPNSFTFPSVVRACYISNA 424
VF IP PD+ + ++I GY + L D + M Q+ NS ++ +++ A +N
Sbjct: 179 VFHTIPHPDSVSWTSLISGYSKWGLIDEAFTIFQLMPQK----NSASWNAMMAAYVQTNR 234
Query: 423 TEEGKQLHAHVFKFGFGENVVTQNNLINMYV---------NFQCLDEAQRVFDKMSQR-- 277
E L F NN+++ +V LD+ + + + + +
Sbjct: 235 FHEAFAL--------FDRMKAENNNVLDKFVATTMLSACTGLGALDQGKWIHEYIKRNGI 286
Query: 276 --DVVSWTTLITGYSRLGLVDEAYKVFELMPK--RNSVTWNAMMAAYVQSNRFREAFALF 109
D T ++ Y + G +++A +VF +P R +WN M+ A LF
Sbjct: 287 ELDSKLTTAIVDMYCKCGCLEKALQVFHSLPLPCRWISSWNCMIGGLAMHGNGEAAIQLF 346
Query: 108 DRMRLEKVDFDKFVTASMLSACTGLGALEQG 16
M ++V D ++L+AC G +E+G
Sbjct: 347 KEMERQRVAPDDITFLNLLTACAHSGLVEEG 377
>ref|XP_003541335.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g66520-like [Glycine max]
Length = 607
Score = 297 bits (760), Expect = 2e-78
Identities = 147/250 (58%), Positives = 192/250 (76%), Gaps = 3/250 (1%)
Frame = -3
Query: 744 SCSTMAELKQFHSKFIRLGLSADNDAMGRLVKFSAVSESGDLNYALQVFDKIPQPDAFIY 565
+CS+MAE+KQ HS +RLGLS +N AM R+ F ++S+ GD+NYAL++F +P PD F+Y
Sbjct: 11 ACSSMAEVKQQHSLLLRLGLSTNNHAMSRIFTFCSLSKHGDINYALKLFTTLPNPDTFLY 70
Query: 564 NTIIKGYLEAQLTDNC-IFFYSRMLQELVAPNSFTFPSVVRACYISNATEEGKQLHAHVF 388
NT+ K + T + + FYS MLQ V PN+FTFPS++RAC + EE KQLHAHV
Sbjct: 71 NTLFKAFFSLSQTPSLSLLFYSHMLQHCVTPNAFTFPSLIRACKLE---EEAKQLHAHVL 127
Query: 387 KFGFGENVVTQNNLINMYVNFQCLDEAQRVFDKMSQRDVVSWTTLITGYSRLGLVDEAYK 208
KFGFG + NNLI++Y F LD+A+RVF MS +VVSWT+L++GYS+ GLVDEA++
Sbjct: 128 KFGFGGDTYALNNLIHVYFAFGSLDDARRVFCTMSDPNVVSWTSLVSGYSQWGLVDEAFR 187
Query: 207 VFELMP-KRNSVTWNAMMAAYVQSNRFREAFALFDRMRLE-KVDFDKFVTASMLSACTGL 34
VFELMP K+NSV+WNAM+A +V+ NRFREAFALF RMR+E K++ D+FV A+MLSACTG+
Sbjct: 188 VFELMPCKKNSVSWNAMIACFVKGNRFREAFALFRRMRVEKKMELDRFVAATMLSACTGV 247
Query: 33 GALEQGEWIH 4
GALEQG WIH
Sbjct: 248 GALEQGMWIH 257
Score = 72.4 bits (176), Expect = 1e-10
Identities = 66/290 (22%), Positives = 117/290 (40%), Gaps = 40/290 (13%)
Frame = -3
Query: 762 TFQS-IESCSTMAELKQFHSKFIRLGLSADNDAMGRLVKFSAVSESGDLNYALQVFDKIP 586
TF S I +C E KQ H+ ++ G D A+ L+ G L+ A +VF +
Sbjct: 105 TFPSLIRACKLEEEAKQLHAHVLKFGFGGDTYALNNLIH--VYFAFGSLDDARRVFCTMS 162
Query: 585 QPDAFIYNTIIKGYLEAQLTDNCIFFYSRM------------------------------ 496
P+ + +++ GY + L D + M
Sbjct: 163 DPNVVSWTSLVSGYSQWGLVDEAFRVFELMPCKKNSVSWNAMIACFVKGNRFREAFALFR 222
Query: 495 ---LQELVAPNSFTFPSVVRACYISNATEEGKQLHAHVFKFGFGENVVTQNNLINMYVNF 325
+++ + + F +++ AC A E+G +H +V K G + +I+MY
Sbjct: 223 RMRVEKKMELDRFVAATMLSACTGVGALEQGMWIHKYVEKTGIVLDSKLATTIIDMYCKC 282
Query: 324 QCLDEAQRVFDKMSQRDVVSWTTLITGYSRLGLVDEAYKVF-----ELMPKRNSVTWNAM 160
CLD+A VF + + V SW +I G++ G ++A ++F E M +S+T+ +
Sbjct: 283 GCLDKAFHVFCGLKVKRVSSWNCMIGGFAMHGKGEDAIRLFKEMEEEAMVAPDSITFVNV 342
Query: 159 MAAYVQSNRFREAFALFDRM-RLEKVDFDKFVTASMLSACTGLGALEQGE 13
+ A S E + F M + +D K M+ G LE+ +
Sbjct: 343 LTACAHSGLVEEGWYYFRYMVDVHGIDPTKEHYGCMVDLLARAGRLEEAK 392
>emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
Length = 622
Score = 219 bits (558), Expect = 5e-55
Identities = 101/261 (38%), Positives = 162/261 (62%)
Frame = -3
Query: 786 TSPNNARPTFQSIESCSTMAELKQFHSKFIRLGLSADNDAMGRLVKFSAVSESGDLNYAL 607
+S +NA T ++ CS M EL+Q H + ++ GL D +L+ F A SG L YA
Sbjct: 13 SSESNAAQTLHLLQRCSNMEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYAR 72
Query: 606 QVFDKIPQPDAFIYNTIIKGYLEAQLTDNCIFFYSRMLQELVAPNSFTFPSVVRACYISN 427
VFD+I +P+ F++NT+I+GY ++ + + Y ML V N++TFP +++AC +
Sbjct: 73 TVFDRIFRPNTFMWNTMIRGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMS 132
Query: 426 ATEEGKQLHAHVFKFGFGENVVTQNNLINMYVNFQCLDEAQRVFDKMSQRDVVSWTTLIT 247
A+EE +Q+HAH+ K GFG + T N+L+N+Y + A+ +FD++ QRD VSW ++I
Sbjct: 133 ASEETQQIHAHIIKMGFGSEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMID 192
Query: 246 GYSRLGLVDEAYKVFELMPKRNSVTWNAMMAAYVQSNRFREAFALFDRMRLEKVDFDKFV 67
GY++ G ++ AY++F MP+RN ++W +M++ V + + +EA LF RM+ + D
Sbjct: 193 GYTKCGEIEMAYEIFNHMPERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVA 252
Query: 66 TASMLSACTGLGALEQGEWIH 4
S L AC LG L+QG+WIH
Sbjct: 253 LVSTLQACADLGVLDQGKWIH 273
Score = 83.6 bits (205), Expect = 5e-14
Identities = 64/274 (23%), Positives = 128/274 (46%), Gaps = 14/274 (5%)
Frame = -3
Query: 780 PNNARPTFQSIESCSTMA---ELKQFHSKFIRLGLSADNDAMGRLVKFSAVSESGDLNYA 610
P+NA +++CS+M+ E +Q H+ I++G ++ L+ + S+SGD+ A
Sbjct: 115 PHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFGSEIYTTNSLL--NVYSKSGDIKSA 172
Query: 609 LQVFDKIPQPDAFIYNTIIKGYLEAQLTDNCIFFYSRMLQELVAPNSFTFPSVVRACYIS 430
+FD++ Q D +N++I GY + + ++ M + N ++ S++ C +
Sbjct: 173 RLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHMPER----NIISWTSMISGCVGA 228
Query: 429 NATEEGKQLHAHVFKFGFGENVVTQNNLINMYVNFQCLDEAQRVFDKMSQRDV----VSW 262
+E L + G + V + + + LD+ + + + + ++ +
Sbjct: 229 GKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILG 288
Query: 261 TTLITGYSRLGLVDEAYKVFELMPKRNSVTWNAMMAAYVQSNRFREAFALFDRMRLEKVD 82
LI Y++ G ++EA +VF M ++ W AM++ Y R REA F +M+ V+
Sbjct: 289 CVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVE 348
Query: 81 FDKFVTASMLSACTGLGAL-------EQGEWIHG 1
++ +L+AC+ G + E E IHG
Sbjct: 349 PNQMTFTGILTACSHAGLVHEAKLLFESMERIHG 382