BLASTX nr result

ID: Cimicifuga21_contig00016478 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Cimicifuga21_contig00016478
         (1094 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522475.1| conserved hypothetical protein [Ricinus comm...   155   2e-35
gb|ADR71288.1| 50S ribosomal protein L32pA [Hevea brasiliensis]       148   2e-33
ref|XP_002283861.1| PREDICTED: uncharacterized protein LOC100264...   144   4e-32
dbj|BAG80685.1| ribosomal protein L32 [Populus alba]                  141   3e-31
ref|XP_002316112.1| predicted protein [Populus trichocarpa] gi|2...   138   2e-30

>ref|XP_002522475.1| conserved hypothetical protein [Ricinus communis]
           gi|223538360|gb|EEF39967.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 140

 Score =  155 bits (391), Expect = 2e-35
 Identities = 80/132 (60%), Positives = 95/132 (71%), Gaps = 10/132 (7%)
 Frame = +3

Query: 156 MLKNEMGNLVHRLSCTRWSHVA-LPAPLDNAISHR-PETSFVLPEFNQELENNHIIE--- 320
           MLK   GN  + L   RW+HVA +P PLD +I++       VLPEFN   +N++      
Sbjct: 7   MLKAASGNNGYTLGFLRWTHVAAMPPPLDGSINNAIAPPQMVLPEFNPNHDNSNSSYDNN 66

Query: 321 -----VPSFSFGGSMELMAVPKKKVSRHKRGIRNGPRALKPIPVIMRCRCCGRVKLPHFF 485
                +PSFSFGGSM+LMAVPKKKVSRHKRGIRNGP+ALKP PVI+RCR CGRVKLPHF+
Sbjct: 67  LEFGFLPSFSFGGSMDLMAVPKKKVSRHKRGIRNGPKALKPTPVIIRCRSCGRVKLPHFY 126

Query: 486 CCSGERGTVGER 521
           CCSGERG  GE+
Sbjct: 127 CCSGERGNAGEQ 138


>gb|ADR71288.1| 50S ribosomal protein L32pA [Hevea brasiliensis]
          Length = 139

 Score =  148 bits (374), Expect = 2e-33
 Identities = 75/131 (57%), Positives = 90/131 (68%), Gaps = 9/131 (6%)
 Frame = +3

Query: 156 MLKNEMGNLVHRLSCTRWSHVA-LPAPLDNAISHRPET-SFVLPEF-------NQELENN 308
           MLK  +G     LS  RW+H+A +P+PLD ++         VLPEF       N    NN
Sbjct: 7   MLKTAVGKYGCTLSLLRWAHIASMPSPLDGSLQRTTAPPDMVLPEFDTNPDNVNSSYRNN 66

Query: 309 HIIEVPSFSFGGSMELMAVPKKKVSRHKRGIRNGPRALKPIPVIMRCRCCGRVKLPHFFC 488
                PSFSFGGS+E+MAVPKKKVS HKRGIRNGP+ALKP PVI+RCR CGR+KLPHF+C
Sbjct: 67  LEFGFPSFSFGGSIEVMAVPKKKVSPHKRGIRNGPKALKPTPVIIRCRSCGRIKLPHFYC 126

Query: 489 CSGERGTVGER 521
           CSG+RG  GE+
Sbjct: 127 CSGDRGKAGEQ 137


>ref|XP_002283861.1| PREDICTED: uncharacterized protein LOC100264586 [Vitis vinifera]
          Length = 128

 Score =  144 bits (363), Expect = 4e-32
 Identities = 74/124 (59%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
 Frame = +3

Query: 153 TMLKNEMGNLVHRLSCTRW--SHVALPAPLDNAISHRPETSFVLPEFNQELENNHIIEVP 326
           TMLK    NL  RL  +R    H A+ APL   +       FVLPE N E + +  IE+P
Sbjct: 3   TMLKCAADNLRCRLISSRGLSHHAAISAPLGRMMDCTTGLQFVLPESNNESQEDPKIELP 62

Query: 327 SFSFGGSMELMAVPKKKVSRHKRGIRNGPRALKPIPVIMRCRCCGRVKLPHFFCCSGERG 506
           +  F GSMELMAVPK+KVSRHKRGIRNGP+ALKP+PVI+RC+ CGRVKLPHF+CCSG+RG
Sbjct: 63  NPYFSGSMELMAVPKRKVSRHKRGIRNGPKALKPVPVIIRCKSCGRVKLPHFYCCSGDRG 122

Query: 507 TVGE 518
             GE
Sbjct: 123 GSGE 126


>dbj|BAG80685.1| ribosomal protein L32 [Populus alba]
          Length = 138

 Score =  141 bits (355), Expect = 3e-31
 Identities = 77/136 (56%), Positives = 91/136 (66%), Gaps = 7/136 (5%)
 Frame = +3

Query: 135 MAFRTTTMLKNEMGNLVHRLSCTRWSHV-ALPAPLDNAI-SHRPETSFVLPEF--NQELE 302
           MA R   +     GN   RL   +W+HV A+  PLD A+ S      F LPEF  NQ+  
Sbjct: 1   MALRLGMLKCAAEGNNGCRLGIRKWTHVVAMAPPLDGALESSIAAPQFTLPEFDANQDTS 60

Query: 303 NNHI---IEVPSFSFGGSMELMAVPKKKVSRHKRGIRNGPRALKPIPVIMRCRCCGRVKL 473
            N        P FSFGGSMELMAVPK+KV+ HKRGIRNGP+ALKPIPVI+RC+ CG+VKL
Sbjct: 61  KNSSDFGFTFPGFSFGGSMELMAVPKRKVTPHKRGIRNGPKALKPIPVIIRCKSCGQVKL 120

Query: 474 PHFFCCSGERGTVGER 521
           PHF+CCSG+RG  GER
Sbjct: 121 PHFYCCSGDRGKNGER 136


>ref|XP_002316112.1| predicted protein [Populus trichocarpa]
           gi|224112197|ref|XP_002316116.1| predicted protein
           [Populus trichocarpa] gi|222865152|gb|EEF02283.1|
           predicted protein [Populus trichocarpa]
           gi|222865156|gb|EEF02287.1| predicted protein [Populus
           trichocarpa]
          Length = 138

 Score =  138 bits (348), Expect = 2e-30
 Identities = 71/118 (60%), Positives = 85/118 (72%), Gaps = 7/118 (5%)
 Frame = +3

Query: 189 RLSCTRWSHV-ALPAPLDNAI-SHRPETSFVLPEF--NQELENNHI---IEVPSFSFGGS 347
           RL   +W+HV A+  PLD A+ S      F LPEF  NQ+  NN        P FSFGGS
Sbjct: 19  RLGIRKWTHVVAMAPPLDGALESSIASPQFTLPEFDANQDTSNNSSDFGFTFPGFSFGGS 78

Query: 348 MELMAVPKKKVSRHKRGIRNGPRALKPIPVIMRCRCCGRVKLPHFFCCSGERGTVGER 521
           MELMAVPK+KV+ HKRGIRNGP+ALKP PVI+RC+ CG+VKLPHF+CCSG+RG  G+R
Sbjct: 79  MELMAVPKRKVTPHKRGIRNGPKALKPTPVIIRCKSCGQVKLPHFYCCSGDRGKNGKR 136


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